2AB5A

Bi3 laglidadg maturase
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
261
structure length
261
Chain Sequence
KLNTDNPIYAYIVGLFEGDGWITISKKGKYLLYELGIEMHIRDIQLLYKIKNILGIGKVTIKKLKMKDGTIKEMCKFNVRNKNHLKNIIIPIFNKYPMLTNKHYDYLYFKDNLLKDIKYYNDLSYYLRPIKPFNTTEDILNKNYFSSWLIGFFEAKSCFSIYKPMNKKMKTASFEVSMNNNMEVMLAIKSYLKINNNIYMNEFNNSKMTTKSINDIKNVVMFINNNPIKLLGYKKLQYLLFLKDLRTITKYNNYFKIPSKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords mRNA maturase
publication title Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 71
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2ab5A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2ab5A02
3C0XA 1VDEA 4AAEA 4UN9A 4AAFA 1U0DA 3R7PA 3HYJA 5E5OA 2VS8A 1MOWA 1N3EA 4YISA 5AKNA 3MISA 4UN7A 1G9ZA 2I3QA 1EF0A 3KO2A 2DCHX 3C0WA 4UNAA 4UNCA 4Z1ZA 2EX5A 1AF5A 4YHXA 3MXAA 1T9IA 3FD2A 4EFJA 4D6OA 4AAGA 3OOLA 5AK9A 3MXBB 1T9JA 1DFAA 2I3PA 4LOXA 4D6NA 3MXBA 3OORA 2VBOB 2VBNB 4AQUA 1LWSA 4UT0A 1UM2A 4AADA 5A74A 1M5XA 3UVFA 2VBLB 2VBOA 3E54A 3QQYA 3HYIA 5A77A 2VBJB 1BP7A 2QOJZ 5A0MB 2AB5A 2FLDA 2CW7A 4UN7G 2XE0B 1R7MA 4Z1XA 5E5SA 5A78A 4UN8G 3MX9A 3MIPA 4AABA 5A0MA 4AQXA 4UNBA 1G9YA 2XE0A 5E67A 5A0WA 5A72A 1N3FA 4Z20A 4UN9G 2VBNA 4YITA 5AKMA 2VS7A 5AKFA 4UN8A 5E63A 2O7MA 1B24A 1DQ3A 2VBLA 1JVAA 1LWTA 2CW8A 4LQ0A 1U0CA 1P8KZ 3EH8A 2VBJA
chains in the Genus database with same CATH superfamily
3C0XA 1VDEA 4AAEA 4UN9A 4AAFA 1U0DA 3R7PA 3HYJA 5E5OA 2VS8A 1MOWA 1N3EA 4YISA 5AKNA 3MISA 4UN7A 1G9ZA 2I3QA 1EF0A 3KO2A 2DCHX 3C0WA 4KZSA 4UNAA 4UNCA 4Z1ZA 2EX5A 1AF5A 4YHXA 3MXAA 1T9IA 3FD2A 4EFJA 4D6OA 4AAGA 3OOLA 5AK9A 3MXBB 1T9JA 1DFAA 2I3PA 4LOXA 4D6NA 3MXBA 3OORA 2VBOB 2VBNB 4AQUA 1LWSA 4UT0A 1UM2A 4AADA 5A74A 1M5XA 3UVFA 2VBLB 2VBOA 3E54A 3QQYA 2F4LA 3HYIA 5A77A 2VBJB 1BP7A 2QOJZ 5A0MB 2AB5A 2FLDA 2CW7A 4UN7G 2XE0B 1R7MA 4Z1XA 5E5SA 5A78A 4UN8G 3MX9A 3MIPA 4AABA 5A0MA 4AQXA 4UNBA 1G9YA 2XE0A 5E67A 5A0WA 5A72A 1N3FA 4Z20A 4UN9G 2VBNA 4YITA 5AKMA 2VS7A 5AKFA 4UN8A 5E63A 2O7MA 1B24A 1DQ3A 2VBLA 1JVAA 1LWTA 2CW8A 4LQ0A 1U0CA 1P8KZ 3EH8A 2VBJA
chains in the Genus database with same CATH topology
3C0XA 1VDEA 4AAEA 4UN9A 4AAFA 1U0DA 3R7PA 3HYJA 5E5OA 2VS8A 1MOWA 1N3EA 4YISA 5AKNA 3MISA 4UN7A 1G9ZA 2I3QA 1EF0A 3KO2A 2DCHX 3C0WA 4UNAA 4UNCA 4Z1ZA 2EX5A 1AF5A 4YHXA 3MXAA 1T9IA 3FD2A 4EFJA 4D6OA 4AAGA 3OOLA 5AK9A 3MXBB 1T9JA 1DFAA 2I3PA 4LOXA 4D6NA 3MXBA 3OORA 2VBOB 2VBNB 4AQUA 1LWSA 4UT0A 1UM2A 4AADA 5A74A 1M5XA 3UVFA 2VBLB 2VBOA 3E54A 3QQYA 3HYIA 5A77A 2VBJB 1BP7A 2QOJZ 5A0MB 2AB5A 2FLDA 2CW7A 4UN7G 2XE0B 1R7MA 4Z1XA 5E5SA 5A78A 4UN8G 3MX9A 3MIPA 4AABA 5A0MA 4AQXA 4UNBA 1G9YA 2XE0A 5E67A 5A0WA 5A72A 1N3FA 4Z20A 4UN9G 2VBNA 4YITA 5AKMA 2VS7A 5AKFA 4UN8A 5E63A 2O7MA 1B24A 1DQ3A 2VBLA 1JVAA 1LWTA 2CW8A 4LQ0A 1U0CA 1P8KZ 3EH8A 2VBJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C0X A;  1VDE A;  4AAE A;  4UN9 A;  4AAF A;  1U0D A;  3R7P A;  3HYJ A;  5E5O A;  2VS8 A;  1MOW A;  1N3E A;  4YIS A;  5AKN A;  3MIS A;  4UN7 A;  1G9Z A;  2I3Q A;  1EF0 A;  3KO2 A;  2DCH X;  3C0W A;  4UNA A;  4UNC A;  4Z1Z A;  2EX5 A;  1AF5 A;  4YHX A;  3MXA A;  1T9I A;  3FD2 A;  4EFJ A;  4D6O A;  4AAG A;  3OOL A;  5AK9 A;  3MXB B;  1T9J A;  1DFA A;  2I3P A;  4LOX A;  4D6N A;  3MXB A;  3OOR A;  2VBO B;  2VBN B;  4AQU A;  1LWS A;  4UT0 A;  1UM2 A;  4AAD A;  5A74 A;  1M5X A;  3UVF A;  2VBL B;  2VBO A;  3E54 A;  3QQY A;  3HYI A;  5A77 A;  2VBJ B;  1BP7 A;  2QOJ Z;  5A0M B;  2AB5 A;  2FLD A;  2CW7 A;  4UN7 G;  2XE0 B;  1R7M A;  4Z1X A;  5E5S A;  5A78 A;  4UN8 G;  3MX9 A;  3MIP A;  4AAB A;  5A0M A;  4AQX A;  4UNB A;  1G9Y A;  2XE0 A;  5E67 A;  5A0W A;  5A72 A;  1N3F A;  4Z20 A;  4UN9 G;  2VBN A;  4YIT A;  5AKM A;  2VS7 A;  5AKF A;  4UN8 A;  5E63 A;  2O7M A;  1B24 A;  1DQ3 A;  2VBL A;  1JVA A;  1LWT A;  2CW8 A;  4LQ0 A;  1U0C A;  1P8K Z;  3EH8 A;  2VBJ A; 
#chains in the Genus database with same CATH topology
 3C0X A;  1VDE A;  4AAE A;  4UN9 A;  4AAF A;  1U0D A;  3R7P A;  3HYJ A;  5E5O A;  2VS8 A;  1MOW A;  1N3E A;  4YIS A;  5AKN A;  3MIS A;  4UN7 A;  1G9Z A;  2I3Q A;  1EF0 A;  3KO2 A;  2DCH X;  3C0W A;  4KZS A;  4UNA A;  4UNC A;  4Z1Z A;  2EX5 A;  1AF5 A;  4YHX A;  3MXA A;  1T9I A;  3FD2 A;  4EFJ A;  4D6O A;  4AAG A;  3OOL A;  5AK9 A;  3MXB B;  1T9J A;  1DFA A;  2I3P A;  4LOX A;  4D6N A;  3MXB A;  3OOR A;  2VBO B;  2VBN B;  4AQU A;  1LWS A;  4UT0 A;  1UM2 A;  4AAD A;  5A74 A;  1M5X A;  3UVF A;  2VBL B;  2VBO A;  3E54 A;  3QQY A;  2F4L A;  3HYI A;  5A77 A;  2VBJ B;  1BP7 A;  2QOJ Z;  5A0M B;  2AB5 A;  2FLD A;  2CW7 A;  4UN7 G;  2XE0 B;  1R7M A;  4Z1X A;  5E5S A;  5A78 A;  4UN8 G;  3MX9 A;  3MIP A;  4AAB A;  5A0M A;  4AQX A;  4UNB A;  1G9Y A;  2XE0 A;  5E67 A;  5A0W A;  5A72 A;  1N3F A;  4Z20 A;  4UN9 G;  2VBN A;  4YIT A;  5AKM A;  2VS7 A;  5AKF A;  4UN8 A;  5E63 A;  2O7M A;  1B24 A;  1DQ3 A;  2VBL A;  1JVA A;  1LWT A;  2CW8 A;  4LQ0 A;  1U0C A;  1P8K Z;  3EH8 A;  2VBJ A; 
#chains in the Genus database with same CATH homology
 3C0X A;  1VDE A;  4AAE A;  4UN9 A;  4AAF A;  1U0D A;  3R7P A;  3HYJ A;  5E5O A;  2VS8 A;  1MOW A;  1N3E A;  4YIS A;  5AKN A;  3MIS A;  4UN7 A;  1G9Z A;  2I3Q A;  1EF0 A;  3KO2 A;  2DCH X;  3C0W A;  4UNA A;  4UNC A;  4Z1Z A;  2EX5 A;  1AF5 A;  4YHX A;  3MXA A;  1T9I A;  3FD2 A;  4EFJ A;  4D6O A;  4AAG A;  3OOL A;  5AK9 A;  3MXB B;  1T9J A;  1DFA A;  2I3P A;  4LOX A;  4D6N A;  3MXB A;  3OOR A;  2VBO B;  2VBN B;  4AQU A;  1LWS A;  4UT0 A;  1UM2 A;  4AAD A;  5A74 A;  1M5X A;  3UVF A;  2VBL B;  2VBO A;  3E54 A;  3QQY A;  3HYI A;  5A77 A;  2VBJ B;  1BP7 A;  2QOJ Z;  5A0M B;  2AB5 A;  2FLD A;  2CW7 A;  4UN7 G;  2XE0 B;  1R7M A;  4Z1X A;  5E5S A;  5A78 A;  4UN8 G;  3MX9 A;  3MIP A;  4AAB A;  5A0M A;  4AQX A;  4UNB A;  1G9Y A;  2XE0 A;  5E67 A;  5A0W A;  5A72 A;  1N3F A;  4Z20 A;  4UN9 G;  2VBN A;  4YIT A;  5AKM A;  2VS7 A;  5AKF A;  4UN8 A;  5E63 A;  2O7M A;  1B24 A;  1DQ3 A;  2VBL A;  1JVA A;  1LWT A;  2CW8 A;  4LQ0 A;  1U0C A;  1P8K Z;  3EH8 A;  2VBJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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