2ACIA

Structure of d166a arginine deiminase
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
412
structure length
402
Chain Sequence
TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRATTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVRDPID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginine deiminase
publication title Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 123
structure length 402
sequence length 412
chains with identical sequence B, C, D
ec nomenclature ec 3.5.3.6: Arginine deiminase.
pdb deposition date 2005-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02274 Amidinotransf Amidinotransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3930.10 Mainly Alpha Orthogonal Bundle Pentein Arginine deiminase 2aciA02
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 2aciA01
2EWOA 2CI7A 1WDAA 3APNA 4N2BA 4N20A 4YTBA 5AK8A 2DW5A 1G61A 4N2AA 2DEYX 5AK7A 2JAIA 4N2KA 4N2GA 1WD8A 3P8PA 1BWDA 4N2CA 1S9RA 4N2EA 4DKTA 4N2HA 7JDWA 8JDWA 4N2MA 6JDWA 3P8EA 3B1TA 4N26A 3APMA 3HVMA 4YT9A 2C6ZA 4X8GA 2JDXA 4N2IA 2ACIA 4X8CA 4N2DA 4E4JA 5AN9I 1JDWA 1H70A 2JDWA 9JDWA 4N2NA 5HP5A 4YTGA 2CI4A 3RHYA 4N24A 2DEXX 2CI3A 1WD9A 1XKNA 5JDWA 1JDXA 4N25A 2AAFA 4N22A 1ZBRA 3I2EA 5M3QA 4BOFA 2ABRA 1VKPA 2CI1A 2CI6A 1G62A 4N2LA 3BPBA 4JDWA 4N28A 2CMUA 4N2FA 3H7KA 1RXXA 2A9GA 2DEWX 2CI5A 2Q3UA 2JAJA 3JDWA 2JERA 3H7CX 3I4AA 1LXYA 3B1UA
chains in the Genus database with same CATH superfamily
2EWOA 2CI7A 1WDAA 3APNA 4N2BA 4N20A 4YTBA 5AK8A 2DW5A 1G61A 4N2AA 2DEYX 5AK7A 1YNIA 2JAIA 4N2KA 4N2GA 1WD8A 1YNHA 3P8PA 1BWDA 4N2CA 1S9RA 4N2EA 4DKTA 4N2HA 7JDWA 8JDWA 4N2MA 6JDWA 3P8EA 3B1TA 4N26A 3APMA 3HVMA 4YT9A 2C6ZA 4X8GA 2JDXA 4N2IA 2ACIA 4X8CA 4N2DA 4E4JA 5AN9I 1JDWA 1H70A 2JDWA 9JDWA 4N2NA 5HP5A 4YTGA 2CI4A 3RHYA 1YNFA 4N24A 2DEXX 2CI3A 1WD9A 1XKNA 5JDWA 1JDXA 4N25A 2AAFA 4N22A 1ZBRA 3I2EA 5M3QA 4BOFA 2ABRA 1VKPA 2CI1A 2CI6A 1G62A 4N2LA 3BPBA 4JDWA 4N28A 2CMUA 4N2FA 3H7KA 1RXXA 2A9GA 2DEWX 2CI5A 2Q3UA 2JAJA 3JDWA 2JERA 3H7CX 3I4AA 1LXYA 3B1UA
chains in the Genus database with same CATH topology
2EWOA 2CI7A 1WDAA 3APNA 4N2BA 4N20A 4YTBA 5AK8A 2DW5A 1G61A 4N2AA 2DEYX 5AK7A 2JAIA 4N2KA 4N2GA 1WD8A 3P8PA 1BWDA 4N2CA 1S9RA 4N2EA 4DKTA 4N2HA 7JDWA 8JDWA 4N2MA 6JDWA 3P8EA 3B1TA 4N26A 3APMA 3HVMA 4YT9A 2C6ZA 4X8GA 2JDXA 4N2IA 2ACIA 4X8CA 4N2DA 4E4JA 5AN9I 1JDWA 1H70A 2JDWA 9JDWA 4N2NA 5HP5A 4YTGA 2CI4A 3RHYA 4N24A 2DEXX 2CI3A 1WD9A 1XKNA 5JDWA 1JDXA 4N25A 2AAFA 4N22A 1ZBRA 3I2EA 5M3QA 4BOFA 2ABRA 1VKPA 2CI1A 2CI6A 1G62A 4N2LA 3BPBA 4JDWA 4N28A 2CMUA 4N2FA 3H7KA 1RXXA 2A9GA 2DEWX 2CI5A 2Q3UA 2JAJA 3JDWA 2JERA 3H7CX 3I4AA 1LXYA 3B1UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EWO A;  2CI7 A;  1WDA A;  3APN A;  4N2B A;  4N20 A;  4YTB A;  5AK8 A;  2DW5 A;  1G61 A;  4N2A A;  2DEY X;  5AK7 A;  2JAI A;  4N2K A;  4N2G A;  1WD8 A;  3P8P A;  1BWD A;  4N2C A;  1S9R A;  4N2E A;  4DKT A;  4N2H A;  7JDW A;  8JDW A;  4N2M A;  6JDW A;  3P8E A;  3B1T A;  4N26 A;  3APM A;  3HVM A;  4YT9 A;  2C6Z A;  4X8G A;  2JDX A;  4N2I A;  2ACI A;  4X8C A;  4N2D A;  4E4J A;  5AN9 I;  1JDW A;  1H70 A;  2JDW A;  9JDW A;  4N2N A;  5HP5 A;  4YTG A;  2CI4 A;  3RHY A;  4N24 A;  2DEX X;  2CI3 A;  1WD9 A;  1XKN A;  5JDW A;  1JDX A;  4N25 A;  2AAF A;  4N22 A;  1ZBR A;  3I2E A;  5M3Q A;  4BOF A;  2ABR A;  1VKP A;  2CI1 A;  2CI6 A;  1G62 A;  4N2L A;  3BPB A;  4JDW A;  4N28 A;  2CMU A;  4N2F A;  3H7K A;  1RXX A;  2A9G A;  2DEW X;  2CI5 A;  2Q3U A;  2JAJ A;  3JDW A;  2JER A;  3H7C X;  3I4A A;  1LXY A;  3B1U A; 
#chains in the Genus database with same CATH topology
 2EWO A;  2CI7 A;  1WDA A;  3APN A;  4N2B A;  4N20 A;  4YTB A;  5AK8 A;  2DW5 A;  1G61 A;  4N2A A;  2DEY X;  5AK7 A;  1YNI A;  2JAI A;  4N2K A;  4N2G A;  1WD8 A;  1YNH A;  3P8P A;  1BWD A;  4N2C A;  1S9R A;  4N2E A;  4DKT A;  4N2H A;  7JDW A;  8JDW A;  4N2M A;  6JDW A;  3P8E A;  3B1T A;  4N26 A;  3APM A;  3HVM A;  4YT9 A;  2C6Z A;  4X8G A;  2JDX A;  4N2I A;  2ACI A;  4X8C A;  4N2D A;  4E4J A;  5AN9 I;  1JDW A;  1H70 A;  2JDW A;  9JDW A;  4N2N A;  5HP5 A;  4YTG A;  2CI4 A;  3RHY A;  1YNF A;  4N24 A;  2DEX X;  2CI3 A;  1WD9 A;  1XKN A;  5JDW A;  1JDX A;  4N25 A;  2AAF A;  4N22 A;  1ZBR A;  3I2E A;  5M3Q A;  4BOF A;  2ABR A;  1VKP A;  2CI1 A;  2CI6 A;  1G62 A;  4N2L A;  3BPB A;  4JDW A;  4N28 A;  2CMU A;  4N2F A;  3H7K A;  1RXX A;  2A9G A;  2DEW X;  2CI5 A;  2Q3U A;  2JAJ A;  3JDW A;  2JER A;  3H7C X;  3I4A A;  1LXY A;  3B1U A; 
#chains in the Genus database with same CATH homology
 2EWO A;  2CI7 A;  1WDA A;  3APN A;  4N2B A;  4N20 A;  4YTB A;  5AK8 A;  2DW5 A;  1G61 A;  4N2A A;  2DEY X;  5AK7 A;  2JAI A;  4N2K A;  4N2G A;  1WD8 A;  3P8P A;  1BWD A;  4N2C A;  1S9R A;  4N2E A;  4DKT A;  4N2H A;  7JDW A;  8JDW A;  4N2M A;  6JDW A;  3P8E A;  3B1T A;  4N26 A;  3APM A;  3HVM A;  4YT9 A;  2C6Z A;  4X8G A;  2JDX A;  4N2I A;  2ACI A;  4X8C A;  4N2D A;  4E4J A;  5AN9 I;  1JDW A;  1H70 A;  2JDW A;  9JDW A;  4N2N A;  5HP5 A;  4YTG A;  2CI4 A;  3RHY A;  4N24 A;  2DEX X;  2CI3 A;  1WD9 A;  1XKN A;  5JDW A;  1JDX A;  4N25 A;  2AAF A;  4N22 A;  1ZBR A;  3I2E A;  5M3Q A;  4BOF A;  2ABR A;  1VKP A;  2CI1 A;  2CI6 A;  1G62 A;  4N2L A;  3BPB A;  4JDW A;  4N28 A;  2CMU A;  4N2F A;  3H7K A;  1RXX A;  2A9G A;  2DEW X;  2CI5 A;  2Q3U A;  2JAJ A;  3JDW A;  2JER A;  3H7C X;  3I4A A;  1LXY A;  3B1U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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