2AD8A

Crystal structure of methanol dehydrogenase from m. w3a1 (form c) in the presence of ethanol
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
571
structure length
571
Chain Sequence
DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Methanol dehydrogenase subunit 1
publication title The enzymatic reaction-induced configuration change of the prosthetic group PQQ of methanol dehydrogenase
pubmed doi rcsb
total genus 172
structure length 571
sequence length 571
chains with identical sequence C
ec nomenclature ec 1.1.2.7: Methanol dehydrogenase (cytochrome c).
pdb deposition date 2005-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 2ad8A00
1H4JA 1LRWA 2AD7A 1KV9A 1H4IA 2D0VA 1YIQA 2AD8A 4TQOA 4MH1A 1KB0A 1W6SA 4MAEA 4CVCA 1FLGA 2AD6A 1G72A 4AAHA 4CVBA
chains in the Genus database with same CATH superfamily
2BGNA 4KR0A 2P8SA 5ISMA 3F8SA 1HZVA 2AD7A 2QOEA 1R9NA 3C43A 1PFQA 1KB0A 1HZUA 4TQOA 3H0CA 1W6SA 2GBFA 1H9YA 1N50A 2FJPA 2I78A 5T4HA 2EEPA 2AJCA 1GJQA 1Z68A 3CCBA 1J2EA 4DSAA 3HACA 2Z3WA 3SX4A 2AJDA 2DCMA 3D4LA 1N1MA 3O95A 2AJBA 1DY7A 1N90A 1H4JA 2QT9A 2GBIA 1E2RA 1H4IA 2D0VA 1YIQA 2RGUA 3BJMA 4MH1A 2GBCA 2G5PA 2RIPA 1HJ5A 1R9MA 1XFDA 2GBGA 3CCCA 2ECFA 2I3ZA 1W1IA 1QKSA 4A5SA 2QKYA 1AOQA 3OPMA 3KWFA 1HJ4A 4QZVA 3C45A 3G0DA 4CVBA 1H9XA 3W2TA 2ONCA 3VJKA 2BGRA 4WJLA 3Q0TA 4FFVA 2HHAA 3G0BA 4N8DA 4DTCA 1LRWA 5T4FA 1BL9A 4L72A 1N15A 2OAGA 1HJ3A 2I03A 1TK3A 2OPHA 3HABA 2JIDA 5T4BA 3VJLA 2G5TA 1NNOA 4DSZA 4J3JA 1WCYA 1GQ1A 1FLGA 3G0CA 3OC0A 4LKOA 2BUCA 2AD6A 1HCMA 3QBJA 4N8EA 1G72A 5T4EA 3EIOA 5KBYA 3VJMA 1TKRA 2AJ8A 1AOFA 3NOXA 4AAHA 4PNZA 2BUAA 4JH0A 2Z3ZA 1NU8A 2OLEA 2QTBA 2OGZA 1KV9A 1RWQA 1ORVA 1NU6A 4G1FA 2AD8A 2QJRA 3KWJA 2IITA 3O9VA 4PV7A 2AJLI 4FFWA 3WQHA 2IIVA 4Q1VA 1AOMA 1X70A 4MAEA 2BUBA 4CVCA 1NIRA 3SWWA 3Q8WA 5LLSA 5I7UA 2G63A 2D5LA 5J3JA 1ORWA 3G0GA 1U8EA 2OQIA 2OQVA 2OAEA
chains in the Genus database with same CATH topology
1H4JA 1LRWA 2AD7A 1KV9A 1H4IA 2D0VA 1YIQA 2AD8A 4TQOA 4MH1A 1KB0A 1W6SA 4MAEA 4CVCA 1FLGA 2AD6A 1G72A 4AAHA 4CVBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H4J A;  1LRW A;  2AD7 A;  1KV9 A;  1H4I A;  2D0V A;  1YIQ A;  2AD8 A;  4TQO A;  4MH1 A;  1KB0 A;  1W6S A;  4MAE A;  4CVC A;  1FLG A;  2AD6 A;  1G72 A;  4AAH A;  4CVB A; 
#chains in the Genus database with same CATH topology
 2BGN A;  4KR0 A;  2P8S A;  5ISM A;  3F8S A;  1HZV A;  2AD7 A;  2QOE A;  1R9N A;  3C43 A;  1PFQ A;  1KB0 A;  1HZU A;  4TQO A;  3H0C A;  1W6S A;  2GBF A;  1H9Y A;  1N50 A;  2FJP A;  2I78 A;  5T4H A;  2EEP A;  2AJC A;  1GJQ A;  1Z68 A;  3CCB A;  1J2E A;  4DSA A;  3HAC A;  2Z3W A;  3SX4 A;  2AJD A;  2DCM A;  3D4L A;  1N1M A;  3O95 A;  2AJB A;  1DY7 A;  1N90 A;  1H4J A;  2QT9 A;  2GBI A;  1E2R A;  1H4I A;  2D0V A;  1YIQ A;  2RGU A;  3BJM A;  4MH1 A;  2GBC A;  2G5P A;  2RIP A;  1HJ5 A;  1R9M A;  1XFD A;  2GBG A;  3CCC A;  2ECF A;  2I3Z A;  1W1I A;  1QKS A;  4A5S A;  2QKY A;  1AOQ A;  3OPM A;  3KWF A;  1HJ4 A;  4QZV A;  3C45 A;  3G0D A;  4CVB A;  1H9X A;  3W2T A;  2ONC A;  3VJK A;  2BGR A;  4WJL A;  3Q0T A;  4FFV A;  2HHA A;  3G0B A;  4N8D A;  4DTC A;  1LRW A;  5T4F A;  1BL9 A;  4L72 A;  1N15 A;  2OAG A;  1HJ3 A;  2I03 A;  1TK3 A;  2OPH A;  3HAB A;  2JID A;  5T4B A;  3VJL A;  2G5T A;  1NNO A;  4DSZ A;  4J3J A;  1WCY A;  1GQ1 A;  1FLG A;  3G0C A;  3OC0 A;  4LKO A;  2BUC A;  2AD6 A;  1HCM A;  3QBJ A;  4N8E A;  1G72 A;  5T4E A;  3EIO A;  5KBY A;  3VJM A;  1TKR A;  2AJ8 A;  1AOF A;  3NOX A;  4AAH A;  4PNZ A;  2BUA A;  4JH0 A;  2Z3Z A;  1NU8 A;  2OLE A;  2QTB A;  2OGZ A;  1KV9 A;  1RWQ A;  1ORV A;  1NU6 A;  4G1F A;  2AD8 A;  2QJR A;  3KWJ A;  2IIT A;  3O9V A;  4PV7 A;  2AJL I;  4FFW A;  3WQH A;  2IIV A;  4Q1V A;  1AOM A;  1X70 A;  4MAE A;  2BUB A;  4CVC A;  1NIR A;  3SWW A;  3Q8W A;  5LLS A;  5I7U A;  2G63 A;  2D5L A;  5J3J A;  1ORW A;  3G0G A;  1U8E A;  2OQI A;  2OQV A;  2OAE A; 
#chains in the Genus database with same CATH homology
 1H4J A;  1LRW A;  2AD7 A;  1KV9 A;  1H4I A;  2D0V A;  1YIQ A;  2AD8 A;  4TQO A;  4MH1 A;  1KB0 A;  1W6S A;  4MAE A;  4CVC A;  1FLG A;  2AD6 A;  1G72 A;  4AAH A;  4CVB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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