2AGLD

Crystal structure of the phenylhydrazine adduct of aromatic amine dehydrogenase from alcaligenes faecalis
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
publication title Atomic description of an enzyme reaction dominated by proton tunneling
pubmed doi rcsb
total genus 26
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2aglD00
4FA5C 2IUQD 2MADL 2GC7B 4K3IC 4O1QC 2I0TD 3RN0C 4FA4C 2HKMD 2I0SD 2AGLD 2H47B 4FA9C 1MAEL 3SVWC 2OK6D 2OJYD 2HJBD 2HJ4D 2AH1D 1MG2B 3L4MC 4L1QC 4FANC 4FA1C 4FB1C 2IUVD 2GC4B 2HKRD 3RN1C 2I0RD 2J55L 4L3HC 4Y5RC 2AGXD 3L4OC 2Q7QD 3RLMC 2OK4D 1MAFL 3SWSC 3SLEC 2J57K 2AGYD 2IUPD 3C75L 2AGWD 1MG3B 1MDAL 2IAAB 2OIZD 2H3XB 3PXWC 4L3GC 2AH0D 3RMZC 4FAVC 2J56L 3SXTC 2HXCD 2IURD 2MTAL 3ORVC 3PXSC 3PXTC 3SJLC 2AGZD 2BBKL
chains in the Genus database with same CATH superfamily
4FA5C 2IUQD 2MADL 2GC7B 4K3IC 4O1QC 2I0TD 3RN0C 4FA4C 2HKMD 2I0SD 2AGLD 2H47B 4FA9C 1MAEL 3SVWC 2OK6D 2OJYD 2HJBD 2HJ4D 2AH1D 1MG2B 3L4MC 4L1QC 4FANC 4FA1C 4FB1C 2IUVD 2GC4B 2HKRD 3RN1C 2I0RD 2J55L 4L3HC 4Y5RC 2AGXD 3L4OC 2Q7QD 3RLMC 2OK4D 1MAFL 3SWSC 3SLEC 2J57K 2AGYD 2IUPD 3C75L 2AGWD 1MG3B 1MDAL 2IAAB 2OIZD 2H3XB 3PXWC 4L3GC 2AH0D 3RMZC 4FAVC 2J56L 3SXTC 2HXCD 2IURD 2MTAL 3ORVC 3PXSC 3PXTC 3SJLC 2AGZD 2BBKL
chains in the Genus database with same CATH topology
4FA5C 2IUQD 2MADL 2GC7B 4K3IC 4O1QC 2I0TD 3RN0C 4FA4C 2HKMD 2I0SD 2AGLD 2H47B 4FA9C 1MAEL 3SVWC 2OK6D 2OJYD 2HJBD 2HJ4D 2AH1D 1MG2B 3L4MC 4L1QC 4FANC 4FA1C 4FB1C 2IUVD 2GC4B 2HKRD 3RN1C 2I0RD 2J55L 4L3HC 4Y5RC 2AGXD 3L4OC 2Q7QD 3RLMC 2OK4D 1MAFL 3SWSC 3SLEC 2J57K 2AGYD 2IUPD 3C75L 2AGWD 1MG3B 1MDAL 2IAAB 2OIZD 2H3XB 3PXWC 4L3GC 2AH0D 3RMZC 4FAVC 2J56L 3SXTC 2HXCD 2IURD 2MTAL 3ORVC 3PXSC 3PXTC 3SJLC 2AGZD 2BBKL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FA5 C;  2IUQ D;  2MAD L;  2GC7 B;  4K3I C;  4O1Q C;  2I0T D;  3RN0 C;  4FA4 C;  2HKM D;  2I0S D;  2AGL D;  2H47 B;  4FA9 C;  1MAE L;  3SVW C;  2OK6 D;  2OJY D;  2HJB D;  2HJ4 D;  2AH1 D;  1MG2 B;  3L4M C;  4L1Q C;  4FAN C;  4FA1 C;  4FB1 C;  2IUV D;  2GC4 B;  2HKR D;  3RN1 C;  2I0R D;  2J55 L;  4L3H C;  4Y5R C;  2AGX D;  3L4O C;  2Q7Q D;  3RLM C;  2OK4 D;  1MAF L;  3SWS C;  3SLE C;  2J57 K;  2AGY D;  2IUP D;  3C75 L;  2AGW D;  1MG3 B;  1MDA L;  2IAA B;  2OIZ D;  2H3X B;  3PXW C;  4L3G C;  2AH0 D;  3RMZ C;  4FAV C;  2J56 L;  3SXT C;  2HXC D;  2IUR D;  2MTA L;  3ORV C;  3PXS C;  3PXT C;  3SJL C;  2AGZ D;  2BBK L; 
#chains in the Genus database with same CATH topology
 4FA5 C;  2IUQ D;  2MAD L;  2GC7 B;  4K3I C;  4O1Q C;  2I0T D;  3RN0 C;  4FA4 C;  2HKM D;  2I0S D;  2AGL D;  2H47 B;  4FA9 C;  1MAE L;  3SVW C;  2OK6 D;  2OJY D;  2HJB D;  2HJ4 D;  2AH1 D;  1MG2 B;  3L4M C;  4L1Q C;  4FAN C;  4FA1 C;  4FB1 C;  2IUV D;  2GC4 B;  2HKR D;  3RN1 C;  2I0R D;  2J55 L;  4L3H C;  4Y5R C;  2AGX D;  3L4O C;  2Q7Q D;  3RLM C;  2OK4 D;  1MAF L;  3SWS C;  3SLE C;  2J57 K;  2AGY D;  2IUP D;  3C75 L;  2AGW D;  1MG3 B;  1MDA L;  2IAA B;  2OIZ D;  2H3X B;  3PXW C;  4L3G C;  2AH0 D;  3RMZ C;  4FAV C;  2J56 L;  3SXT C;  2HXC D;  2IUR D;  2MTA L;  3ORV C;  3PXS C;  3PXT C;  3SJL C;  2AGZ D;  2BBK L; 
#chains in the Genus database with same CATH homology
 4FA5 C;  2IUQ D;  2MAD L;  2GC7 B;  4K3I C;  4O1Q C;  2I0T D;  3RN0 C;  4FA4 C;  2HKM D;  2I0S D;  2AGL D;  2H47 B;  4FA9 C;  1MAE L;  3SVW C;  2OK6 D;  2OJY D;  2HJB D;  2HJ4 D;  2AH1 D;  1MG2 B;  3L4M C;  4L1Q C;  4FAN C;  4FA1 C;  4FB1 C;  2IUV D;  2GC4 B;  2HKR D;  3RN1 C;  2I0R D;  2J55 L;  4L3H C;  4Y5R C;  2AGX D;  3L4O C;  2Q7Q D;  3RLM C;  2OK4 D;  1MAF L;  3SWS C;  3SLE C;  2J57 K;  2AGY D;  2IUP D;  3C75 L;  2AGW D;  1MG3 B;  1MDA L;  2IAA B;  2OIZ D;  2H3X B;  3PXW C;  4L3G C;  2AH0 D;  3RMZ C;  4FAV C;  2J56 L;  3SXT C;  2HXC D;  2IUR D;  2MTA L;  3ORV C;  3PXS C;  3PXT C;  3SJL C;  2AGZ D;  2BBK L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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