2AGMA

Solution structure of the r-module from alge4
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
167
structure length
167
Chain Sequence
GSDGEPLVGGDTDDQLQGGSGADRLDGGAGDDILDGGAGRDRLSGGAGADTFVFSAREDSYRTDTAVFNDLILDFEASEDRIDLSALGFSGLGDGYGGTLLLKTNAEGTRTYLKSFEADAEGRRFEVALDGDHTGDLSAANVVFAATGTTTELEVLGDSGTQAGAIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Poly(beta-D-mannuronate) C5 epimerase 4
publication title NMR structure of the R-module: a parallel beta-roll subunit from an Azotobacter vinelandii mannuronan C-5 epimerase.
pubmed doi rcsb
source organism Azotobacter vinelandii
total genus 22
structure length 167
sequence length 167
ec nomenclature ec 5.1.3.37: Mannuronan 5-epimerase.
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00353 HemolysinCabind RTX calcium-binding nonapeptide repeat (4 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2agmA01
3ULTA 2Z8ZA 1G9KA 1OM8A 3HBVP 1JIWP 1K7IA 5CXLA 3LAAA 2YO0A 5CVWA 1GO8P 2ML2A 2ZVDA 1H71P 1SRPA 2ZJ6A 1AF0A 1SATA 2QUAA 1KAPP 2YO1A 3WP8A 1OMJA 2AGMA 2Z8XA 1GO7P 3A70A 1AKLA 1O0QA 2QUBA 3LA9A 2XQHA 3HB2P 1OM7A 1OM6A 1O0TA 5D7WA 1P9HA 1SMPA 2ZJ7A 1K7QA 3A6ZA 4I35A 1K7GA 3NTNA 3VI1A 3HDAP 3HBUP 3S6LA 3U1RA
chains in the Genus database with same CATH superfamily
3ULTA 2Z8ZA 1G9KA 1OM8A 3HBVP 1JIWP 1K7IA 5CXLA 3LAAA 2YO0A 5CVWA 1GO8P 2ML2A 2ZVDA 1H71P 1SRPA 2ZJ6A 1AF0A 1SATA 2QUAA 1KAPP 2YO1A 3WP8A 1OMJA 2AGMA 2Z8XA 1GO7P 3A70A 1AKLA 1O0QA 2QUBA 3LA9A 4DT5A 2XQHA 3HB2P 1OM7A 1OM6A 1O0TA 5D7WA 1P9HA 1SMPA 2ZJ7A 1K7QA 3A6ZA 4I35A 1K7GA 3NTNA 3VI1A 3HDAP 3HBUP 3S6LA 3U1RA
chains in the Genus database with same CATH topology
3ULTA 2Z8ZA 1G9KA 1OM8A 3HBVP 1JIWP 1K7IA 5CXLA 3LAAA 2YO0A 5CVWA 1GO8P 2ML2A 2ZVDA 1H71P 1SRPA 2ZJ6A 1AF0A 1SATA 2QUAA 1KAPP 2YO1A 3WP8A 1OMJA 2AGMA 2Z8XA 1GO7P 3A70A 1AKLA 1O0QA 2QUBA 3LA9A 2XQHA 3HB2P 1OM7A 1OM6A 1O0TA 5D7WA 1P9HA 1SMPA 2ZJ7A 1K7QA 3A6ZA 4I35A 1K7GA 3NTNA 3VI1A 3HDAP 3HBUP 3S6LA 3U1RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ULT A;  2Z8Z A;  1G9K A;  1OM8 A;  3HBV P;  1JIW P;  1K7I A;  5CXL A;  3LAA A;  2YO0 A;  5CVW A;  1GO8 P;  2ML2 A;  2ZVD A;  1H71 P;  1SRP A;  2ZJ6 A;  1AF0 A;  1SAT A;  2QUA A;  1KAP P;  2YO1 A;  3WP8 A;  1OMJ A;  2AGM A;  2Z8X A;  1GO7 P;  3A70 A;  1AKL A;  1O0Q A;  2QUB A;  3LA9 A;  2XQH A;  3HB2 P;  1OM7 A;  1OM6 A;  1O0T A;  5D7W A;  1P9H A;  1SMP A;  2ZJ7 A;  1K7Q A;  3A6Z A;  4I35 A;  1K7G A;  3NTN A;  3VI1 A;  3HDA P;  3HBU P;  3S6L A;  3U1R A; 
#chains in the Genus database with same CATH topology
 3ULT A;  2Z8Z A;  1G9K A;  1OM8 A;  3HBV P;  1JIW P;  1K7I A;  5CXL A;  3LAA A;  2YO0 A;  5CVW A;  1GO8 P;  2ML2 A;  2ZVD A;  1H71 P;  1SRP A;  2ZJ6 A;  1AF0 A;  1SAT A;  2QUA A;  1KAP P;  2YO1 A;  3WP8 A;  1OMJ A;  2AGM A;  2Z8X A;  1GO7 P;  3A70 A;  1AKL A;  1O0Q A;  2QUB A;  3LA9 A;  4DT5 A;  2XQH A;  3HB2 P;  1OM7 A;  1OM6 A;  1O0T A;  5D7W A;  1P9H A;  1SMP A;  2ZJ7 A;  1K7Q A;  3A6Z A;  4I35 A;  1K7G A;  3NTN A;  3VI1 A;  3HDA P;  3HBU P;  3S6L A;  3U1R A; 
#chains in the Genus database with same CATH homology
 3ULT A;  2Z8Z A;  1G9K A;  1OM8 A;  3HBV P;  1JIW P;  1K7I A;  5CXL A;  3LAA A;  2YO0 A;  5CVW A;  1GO8 P;  2ML2 A;  2ZVD A;  1H71 P;  1SRP A;  2ZJ6 A;  1AF0 A;  1SAT A;  2QUA A;  1KAP P;  2YO1 A;  3WP8 A;  1OMJ A;  2AGM A;  2Z8X A;  1GO7 P;  3A70 A;  1AKL A;  1O0Q A;  2QUB A;  3LA9 A;  2XQH A;  3HB2 P;  1OM7 A;  1OM6 A;  1O0T A;  5D7W A;  1P9H A;  1SMP A;  2ZJ7 A;  1K7Q A;  3A6Z A;  4I35 A;  1K7G A;  3NTN A;  3VI1 A;  3HDA P;  3HBU P;  3S6L A;  3U1R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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