2AHUA

Crystal structure of acyl-coa transferase (ydif) apoenzyme from escherichia coli o157:h7.
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
526
structure length
515
Chain Sequence
VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords putative enzyme ydiF
publication title Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases.
pubmed doi rcsb
source organism Escherichia coli
total genus 158
structure length 515
sequence length 526
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2005-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahuA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahuA01
3DLXA 2AHVA 1O9LA 3CDKB 2NRBA 3RRLB 1K6DA 3K6MA 2AHUA 2OASA 1POIA 2NRCA 1OPEA 3GK7A 1XR4A 5DBNA 2HJ0A 1OOZA 3OXOA 1POIB 3QDQA 3CDKA 1OOYA 2AHWA 1M3EA 5DBNB 3RRLA 3D3UA 3EH7A 4KGBA
chains in the Genus database with same CATH superfamily
3DLXA 2AHVA 1O9LA 3CDKB 2NRBA 3RRLB 1K6DA 3K6MA 2AHUA 2OASA 1POIA 2NRCA 1OPEA 3GK7A 1XR4A 5DBNA 2HJ0A 1OOZA 3OXOA 1POIB 3QDQA 3CDKA 1OOYA 2AHWA 1M3EA 5DBNB 3RRLA 3D3UA 3EH7A 4KGBA
chains in the Genus database with same CATH topology
3DLXA 2AHVA 1O9LA 3CDKB 2NRBA 3RRLB 1K6DA 3K6MA 2AHUA 2OASA 1POIA 2NRCA 1OPEA 3GK7A 1XR4A 5DBNA 2HJ0A 1OOZA 3OXOA 1POIB 3QDQA 3CDKA 1OOYA 2AHWA 1M3EA 5DBNB 3RRLA 3D3UA 3EH7A 4KGBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DLX A;  2AHV A;  1O9L A;  3CDK B;  2NRB A;  3RRL B;  1K6D A;  3K6M A;  2AHU A;  2OAS A;  1POI A;  2NRC A;  1OPE A;  3GK7 A;  1XR4 A;  5DBN A;  2HJ0 A;  1OOZ A;  3OXO A;  1POI B;  3QDQ A;  3CDK A;  1OOY A;  2AHW A;  1M3E A;  5DBN B;  3RRL A;  3D3U A;  3EH7 A;  4KGB A; 
#chains in the Genus database with same CATH topology
 3DLX A;  2AHV A;  1O9L A;  3CDK B;  2NRB A;  3RRL B;  1K6D A;  3K6M A;  2AHU A;  2OAS A;  1POI A;  2NRC A;  1OPE A;  3GK7 A;  1XR4 A;  5DBN A;  2HJ0 A;  1OOZ A;  3OXO A;  1POI B;  3QDQ A;  3CDK A;  1OOY A;  2AHW A;  1M3E A;  5DBN B;  3RRL A;  3D3U A;  3EH7 A;  4KGB A; 
#chains in the Genus database with same CATH homology
 3DLX A;  2AHV A;  1O9L A;  3CDK B;  2NRB A;  3RRL B;  1K6D A;  3K6M A;  2AHU A;  2OAS A;  1POI A;  2NRC A;  1OPE A;  3GK7 A;  1XR4 A;  5DBN A;  2HJ0 A;  1OOZ A;  3OXO A;  1POI B;  3QDQ A;  3CDK A;  1OOY A;  2AHW A;  1M3E A;  5DBN B;  3RRL A;  3D3U A;  3EH7 A;  4KGB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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