2AHUA

Crystal structure of acyl-coa transferase (ydif) apoenzyme from escherichia coli o157:h7.
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
526
structure length
515
Chain Sequence
VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords putative enzyme ydiF
publication title Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 158
structure length 515
sequence length 526
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2005-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahuA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahuA01
2NRBA 1K6DA 1XR4A 3CDKB 3EH7A 3QDQA 5DBNB 4KGBA 3OXOA 1OOYA 3CDKA 2OASA 3K6MA 3D3UA 1O9LA 5DBNA 3DLXA 3RRLB 1M3EA 1POIB 1OPEA 3RRLA 2AHWA 3GK7A 1POIA 1OOZA 2AHVA 2AHUA 2NRCA 2HJ0A
chains in the Genus database with same CATH superfamily
2NRBA 1K6DA 1XR4A 3CDKB 3EH7A 3QDQA 5DBNB 4KGBA 3OXOA 1OOYA 3CDKA 2OASA 3K6MA 3D3UA 1O9LA 5DBNA 3DLXA 3RRLB 1M3EA 1POIB 1OPEA 3RRLA 2AHWA 3GK7A 1POIA 1OOZA 2AHVA 2AHUA 2NRCA 2HJ0A
chains in the Genus database with same CATH topology
2NRBA 1K6DA 1XR4A 3CDKB 3EH7A 3QDQA 5DBNB 4KGBA 3OXOA 1OOYA 3CDKA 2OASA 3K6MA 3D3UA 1O9LA 5DBNA 3DLXA 3RRLB 1M3EA 1POIB 1OPEA 3RRLA 2AHWA 3GK7A 1POIA 1OOZA 2AHVA 2AHUA 2NRCA 2HJ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NRB A;  1K6D A;  1XR4 A;  3CDK B;  3EH7 A;  3QDQ A;  5DBN B;  4KGB A;  3OXO A;  1OOY A;  3CDK A;  2OAS A;  3K6M A;  3D3U A;  1O9L A;  5DBN A;  3DLX A;  3RRL B;  1M3E A;  1POI B;  1OPE A;  3RRL A;  2AHW A;  3GK7 A;  1POI A;  1OOZ A;  2AHV A;  2AHU A;  2NRC A;  2HJ0 A; 
#chains in the Genus database with same CATH topology
 2NRB A;  1K6D A;  1XR4 A;  3CDK B;  3EH7 A;  3QDQ A;  5DBN B;  4KGB A;  3OXO A;  1OOY A;  3CDK A;  2OAS A;  3K6M A;  3D3U A;  1O9L A;  5DBN A;  3DLX A;  3RRL B;  1M3E A;  1POI B;  1OPE A;  3RRL A;  2AHW A;  3GK7 A;  1POI A;  1OOZ A;  2AHV A;  2AHU A;  2NRC A;  2HJ0 A; 
#chains in the Genus database with same CATH homology
 2NRB A;  1K6D A;  1XR4 A;  3CDK B;  3EH7 A;  3QDQ A;  5DBN B;  4KGB A;  3OXO A;  1OOY A;  3CDK A;  2OAS A;  3K6M A;  3D3U A;  1O9L A;  5DBN A;  3DLX A;  3RRL B;  1M3E A;  1POI B;  1OPE A;  3RRL A;  2AHW A;  3GK7 A;  1POI A;  1OOZ A;  2AHV A;  2AHU A;  2NRC A;  2HJ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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