2AHWA

Crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-thioester complex with coa- 2
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
526
structure length
512
Chain Sequence
VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords putative enzyme YdiF
publication title Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 162
structure length 512
sequence length 526
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2005-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahwA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahwA01
2AHWA 1OOZA 2AHVA 3DLXA 1O9LA 1OOYA 1POIA 1XR4A 3EH7A 5DBNB 2OASA 2NRCA 2AHUA 3QDQA 3D3UA 1POIB 3RRLA 3OXOA 1K6DA 1M3EA 2HJ0A 3CDKA 3RRLB 2NRBA 3CDKB 3GK7A 1OPEA 5DBNA 3K6MA 4KGBA
chains in the Genus database with same CATH superfamily
2AHWA 1OOZA 2AHVA 3DLXA 1O9LA 1OOYA 1POIA 1XR4A 3EH7A 5DBNB 2OASA 2NRCA 2AHUA 3QDQA 3D3UA 1POIB 3RRLA 3OXOA 1K6DA 1M3EA 2HJ0A 3CDKA 3RRLB 2NRBA 3CDKB 3GK7A 1OPEA 5DBNA 3K6MA 4KGBA
chains in the Genus database with same CATH topology
2AHWA 1OOZA 2AHVA 3DLXA 1O9LA 1OOYA 1POIA 1XR4A 3EH7A 5DBNB 2OASA 2NRCA 2AHUA 3QDQA 3D3UA 1POIB 3RRLA 3OXOA 1K6DA 1M3EA 2HJ0A 3CDKA 3RRLB 2NRBA 3CDKB 3GK7A 1OPEA 5DBNA 3K6MA 4KGBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHW A;  1OOZ A;  2AHV A;  3DLX A;  1O9L A;  1OOY A;  1POI A;  1XR4 A;  3EH7 A;  5DBN B;  2OAS A;  2NRC A;  2AHU A;  3QDQ A;  3D3U A;  1POI B;  3RRL A;  3OXO A;  1K6D A;  1M3E A;  2HJ0 A;  3CDK A;  3RRL B;  2NRB A;  3CDK B;  3GK7 A;  1OPE A;  5DBN A;  3K6M A;  4KGB A; 
#chains in the Genus database with same CATH topology
 2AHW A;  1OOZ A;  2AHV A;  3DLX A;  1O9L A;  1OOY A;  1POI A;  1XR4 A;  3EH7 A;  5DBN B;  2OAS A;  2NRC A;  2AHU A;  3QDQ A;  3D3U A;  1POI B;  3RRL A;  3OXO A;  1K6D A;  1M3E A;  2HJ0 A;  3CDK A;  3RRL B;  2NRB A;  3CDK B;  3GK7 A;  1OPE A;  5DBN A;  3K6M A;  4KGB A; 
#chains in the Genus database with same CATH homology
 2AHW A;  1OOZ A;  2AHV A;  3DLX A;  1O9L A;  1OOY A;  1POI A;  1XR4 A;  3EH7 A;  5DBN B;  2OAS A;  2NRC A;  2AHU A;  3QDQ A;  3D3U A;  1POI B;  3RRL A;  3OXO A;  1K6D A;  1M3E A;  2HJ0 A;  3CDK A;  3RRL B;  2NRB A;  3CDK B;  3GK7 A;  1OPE A;  5DBN A;  3K6M A;  4KGB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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