2AKOA

Crystal structure of glutamate 5-kinase from campylobacter jejuni
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
250
structure length
241
Chain Sequence
KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutamate 5-kinase
publication title Crystal structure of Glutamate 5-kinase from Campylobacter jejuni
rcsb
source organism Campylobacter jejuni
molecule tags Transferase
total genus 83
structure length 241
sequence length 250
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2005-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2akoA00
2J5VA 4JZ7A 2J4JA 3C1MA 4NDRA 3K56A 1GS5A 2JJ4A 3D41A 1Z9DA 3L76A 2BTYA 3ZZGA 3NWYA 2V4YA 3S6GA 3WWNA 2WE5A 3U6UA 3LKKA 2VA1A 2RD5A 2J4KA 3ZZHA 3KZFA 3K4OA 2CDQA 1OHBA 2BUFA 3ZZFA 4USJA 4NDRB 1GSJA 1B7BA 2WE4A 3EK6A 4JZ8A 2E9YA 2WXBA 3QURA 2IJ9A 3TVIA 2OGXB 3S6HA 4Q1TA 2JI5A 2AP9A 3L86A 1OH9A 4NDPA 2AKOA 2BNDA 3B8GA 4JZ9A 3QUNA 2V5HA 2A1FA 4AXSA 3D40A 4F6TA 3D2MA 3WWMA 2J5TA 4NDQA 2BRIA 2W21A 3ZZIA 4OLCA 2BRXA 3AAWA 1YBDA 4A7XA 2X2WA 2J0WA 2BNEA 3AB4A 2HMFA 3T7BA 2BNFA 3QVFA 4F6TB 3LL9A 3K52A 3AB2A 4NDOA 3C20A 2J0XA 4NDQB 4I49A 2R8VA 3C1NA 3S6KA 2R98A 3K4YA 2JJXA 3D2PA 2OGXA 4NDPB 3QVHA 1OHAA 2BMUA 3QUOA 4A7WA 3LL5A 1E19A 4AB7A 2J4LA 4NDOB 3EK5A 4KZTA
chains in the Genus database with same CATH superfamily
2J5VA 4JZ7A 2J4JA 3C1MA 4NDRA 3K56A 1GS5A 2JJ4A 3D41A 1Z9DA 3L76A 2BTYA 3ZZGA 3NWYA 2V4YA 3S6GA 3WWNA 2WE5A 3U6UA 3LKKA 2VA1A 2RD5A 2J4KA 3ZZHA 3KZFA 3K4OA 2CDQA 1OHBA 2BUFA 3ZZFA 4USJA 4NDRB 1GSJA 1B7BA 2WE4A 3EK6A 4JZ8A 2E9YA 2WXBA 3QURA 2IJ9A 3TVIA 2OGXB 3S6HA 4Q1TA 2JI5A 2AP9A 3L86A 1OH9A 4NDPA 2AKOA 2BNDA 3B8GA 4JZ9A 3QUNA 2V5HA 2A1FA 4AXSA 3D40A 4F6TA 3D2MA 3WWMA 2J5TA 4NDQA 2BRIA 2W21A 3ZZIA 4OLCA 2BRXA 3AAWA 1YBDA 4A7XA 2X2WA 2J0WA 2BNEA 3AB4A 2HMFA 3T7BA 2BNFA 3QVFA 4F6TB 3LL9A 3K52A 3AB2A 4NDOA 3C20A 2J0XA 4NDQB 4I49A 2R8VA 3C1NA 3S6KA 2R98A 3K4YA 2JJXA 3D2PA 2OGXA 4NDPB 3QVHA 1OHAA 2BMUA 3QUOA 4A7WA 3LL5A 1E19A 4AB7A 2J4LA 4NDOB 3EK5A 4KZTA
chains in the Genus database with same CATH topology
2J5VA 4JZ7A 2J4JA 3C1MA 4NDRA 3K56A 1GS5A 2JJ4A 3D41A 1Z9DA 3L76A 2BTYA 3ZZGA 3NWYA 2V4YA 3S6GA 3WWNA 2WE5A 3U6UA 3LKKA 2VA1A 2RD5A 2J4KA 3ZZHA 3KZFA 3K4OA 2CDQA 1OHBA 2BUFA 3ZZFA 4USJA 4NDRB 1GSJA 1B7BA 2WE4A 3EK6A 4JZ8A 2E9YA 2WXBA 3QURA 2IJ9A 3TVIA 2OGXB 3S6HA 4Q1TA 2JI5A 2AP9A 3L86A 1OH9A 4NDPA 2AKOA 2BNDA 3B8GA 4JZ9A 3QUNA 2V5HA 2A1FA 4AXSA 3D40A 4F6TA 3D2MA 3WWMA 2J5TA 4NDQA 2BRIA 2W21A 3ZZIA 4OLCA 2BRXA 3AAWA 1YBDA 4A7XA 2X2WA 2J0WA 2BNEA 3AB4A 2HMFA 3T7BA 2BNFA 3QVFA 4F6TB 3LL9A 3K52A 3AB2A 4NDOA 3C20A 2J0XA 4NDQB 4I49A 2R8VA 3C1NA 3S6KA 2R98A 3K4YA 2JJXA 3D2PA 2OGXA 4NDPB 3QVHA 1OHAA 2BMUA 3QUOA 4A7WA 3LL5A 1E19A 4AB7A 2J4LA 4NDOB 3EK5A 4KZTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J5V A;  4JZ7 A;  2J4J A;  3C1M A;  4NDR A;  3K56 A;  1GS5 A;  2JJ4 A;  3D41 A;  1Z9D A;  3L76 A;  2BTY A;  3ZZG A;  3NWY A;  2V4Y A;  3S6G A;  3WWN A;  2WE5 A;  3U6U A;  3LKK A;  2VA1 A;  2RD5 A;  2J4K A;  3ZZH A;  3KZF A;  3K4O A;  2CDQ A;  1OHB A;  2BUF A;  3ZZF A;  4USJ A;  4NDR B;  1GSJ A;  1B7B A;  2WE4 A;  3EK6 A;  4JZ8 A;  2E9Y A;  2WXB A;  3QUR A;  2IJ9 A;  3TVI A;  2OGX B;  3S6H A;  4Q1T A;  2JI5 A;  2AP9 A;  3L86 A;  1OH9 A;  4NDP A;  2AKO A;  2BND A;  3B8G A;  4JZ9 A;  3QUN A;  2V5H A;  2A1F A;  4AXS A;  3D40 A;  4F6T A;  3D2M A;  3WWM A;  2J5T A;  4NDQ A;  2BRI A;  2W21 A;  3ZZI A;  4OLC A;  2BRX A;  3AAW A;  1YBD A;  4A7X A;  2X2W A;  2J0W A;  2BNE A;  3AB4 A;  2HMF A;  3T7B A;  2BNF A;  3QVF A;  4F6T B;  3LL9 A;  3K52 A;  3AB2 A;  4NDO A;  3C20 A;  2J0X A;  4NDQ B;  4I49 A;  2R8V A;  3C1N A;  3S6K A;  2R98 A;  3K4Y A;  2JJX A;  3D2P A;  2OGX A;  4NDP B;  3QVH A;  1OHA A;  2BMU A;  3QUO A;  4A7W A;  3LL5 A;  1E19 A;  4AB7 A;  2J4L A;  4NDO B;  3EK5 A;  4KZT A; 
#chains in the Genus database with same CATH topology
 2J5V A;  4JZ7 A;  2J4J A;  3C1M A;  4NDR A;  3K56 A;  1GS5 A;  2JJ4 A;  3D41 A;  1Z9D A;  3L76 A;  2BTY A;  3ZZG A;  3NWY A;  2V4Y A;  3S6G A;  3WWN A;  2WE5 A;  3U6U A;  3LKK A;  2VA1 A;  2RD5 A;  2J4K A;  3ZZH A;  3KZF A;  3K4O A;  2CDQ A;  1OHB A;  2BUF A;  3ZZF A;  4USJ A;  4NDR B;  1GSJ A;  1B7B A;  2WE4 A;  3EK6 A;  4JZ8 A;  2E9Y A;  2WXB A;  3QUR A;  2IJ9 A;  3TVI A;  2OGX B;  3S6H A;  4Q1T A;  2JI5 A;  2AP9 A;  3L86 A;  1OH9 A;  4NDP A;  2AKO A;  2BND A;  3B8G A;  4JZ9 A;  3QUN A;  2V5H A;  2A1F A;  4AXS A;  3D40 A;  4F6T A;  3D2M A;  3WWM A;  2J5T A;  4NDQ A;  2BRI A;  2W21 A;  3ZZI A;  4OLC A;  2BRX A;  3AAW A;  1YBD A;  4A7X A;  2X2W A;  2J0W A;  2BNE A;  3AB4 A;  2HMF A;  3T7B A;  2BNF A;  3QVF A;  4F6T B;  3LL9 A;  3K52 A;  3AB2 A;  4NDO A;  3C20 A;  2J0X A;  4NDQ B;  4I49 A;  2R8V A;  3C1N A;  3S6K A;  2R98 A;  3K4Y A;  2JJX A;  3D2P A;  2OGX A;  4NDP B;  3QVH A;  1OHA A;  2BMU A;  3QUO A;  4A7W A;  3LL5 A;  1E19 A;  4AB7 A;  2J4L A;  4NDO B;  3EK5 A;  4KZT A; 
#chains in the Genus database with same CATH homology
 2J5V A;  4JZ7 A;  2J4J A;  3C1M A;  4NDR A;  3K56 A;  1GS5 A;  2JJ4 A;  3D41 A;  1Z9D A;  3L76 A;  2BTY A;  3ZZG A;  3NWY A;  2V4Y A;  3S6G A;  3WWN A;  2WE5 A;  3U6U A;  3LKK A;  2VA1 A;  2RD5 A;  2J4K A;  3ZZH A;  3KZF A;  3K4O A;  2CDQ A;  1OHB A;  2BUF A;  3ZZF A;  4USJ A;  4NDR B;  1GSJ A;  1B7B A;  2WE4 A;  3EK6 A;  4JZ8 A;  2E9Y A;  2WXB A;  3QUR A;  2IJ9 A;  3TVI A;  2OGX B;  3S6H A;  4Q1T A;  2JI5 A;  2AP9 A;  3L86 A;  1OH9 A;  4NDP A;  2AKO A;  2BND A;  3B8G A;  4JZ9 A;  3QUN A;  2V5H A;  2A1F A;  4AXS A;  3D40 A;  4F6T A;  3D2M A;  3WWM A;  2J5T A;  4NDQ A;  2BRI A;  2W21 A;  3ZZI A;  4OLC A;  2BRX A;  3AAW A;  1YBD A;  4A7X A;  2X2W A;  2J0W A;  2BNE A;  3AB4 A;  2HMF A;  3T7B A;  2BNF A;  3QVF A;  4F6T B;  3LL9 A;  3K52 A;  3AB2 A;  4NDO A;  3C20 A;  2J0X A;  4NDQ B;  4I49 A;  2R8V A;  3C1N A;  3S6K A;  2R98 A;  3K4Y A;  2JJX A;  3D2P A;  2OGX A;  4NDP B;  3QVH A;  1OHA A;  2BMU A;  3QUO A;  4A7W A;  3LL5 A;  1E19 A;  4AB7 A;  2J4L A;  4NDO B;  3EK5 A;  4KZT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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