2ASFA

Crystal structure of the conserved hypothetical protein rv2074 from mycobacterium tuberculosis 1.6 a
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
125
Chain Sequence
SDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein Rv2074
publication title The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 30
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2005-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2asfA00
1TY9A 2ARZA 2I02A 4HMXA 3U5WA 2E83A 3A20A 2ED4A 3BNKA 1WGBA 2IG6A 2HTDA 3CP3A 4HMVA 2GJGA 3VY5A 2X1JA 1G78A 3F7EA 4F07A 3E4VA 3BPKA 4YBNA 2D37A 1JNWA 3EC6A 2R0XA 4Y9IA 2IABA 5BNCA 3SWJA 4IRAA 3A6RA 3R5YA 1RZ1A 3A6QA 2D36A 2OL5A 3ZOEA 2A2JA 2RE7A 3KYFA 2FG9A 2FURA 2PTFA 1WLIA 3HY8A 3R5PA 3TGVA 1DNLA 2ECRA 2HHZA 1AXJA 1NRGA 3GASA 3RH7A 1W3PA 4HMWA 4HX6A 2FHQA 3B5MA 1USFA 2I51A 1Y30A 1CI0A 3DB0A 3ZOHA 4YWNA 1RFEA 3U34A 1USCA 1FLMA 4N7RC 1VL7A 4QVBA 5JABA 3ZODA 3U0IA 3ZOCA 5CHOA 5CHEC 1YLNA 2Q9KA 1YOAA 1XHNA 3VY2A 4ZKYA 4HMUA 2HTIA 5ESCA 3AMFA 3VYAA 2D5MA 3R5RA 3IN6A 2VPAA 4R82A 2RDEA 1I0SA 1W9AA 2QCKA 3DNHA 1W3QA 2AQ6A 3DMBA 3R5ZA 3PFTA 4XHYA 4HMTA 3R5WA 1I0RA 3CB0A 2ECUA 2OU5A 4Z85A 2QEAA 1G79A 3KYGA 1RZ0A 3K86A 4HMSA 3R5LA 3FGEA 2HQ7A 4XJ2A 3ZOFA 3FKHA 2D38A 1W3OA 1W3RA 2X1KA 3BA3A 1EJEA 2NR4A 2ASFA 1T9MA 3H96A 3NFWA 1G76A 2R6VA 3U35A 3AWHA 3ZOGA 2IMLA 3K87A 2HQ9A 3HMZA 4L82A 1WLKA 1G77A 1WV4A 1XXOA 3K88A
chains in the Genus database with same CATH superfamily
1TY9A 2ARZA 2I02A 4HMXA 3U5WA 2E83A 3A20A 2ED4A 3BNKA 1WGBA 2IG6A 2HTDA 3CP3A 4HMVA 2GJGA 3VY5A 2X1JA 1G78A 3F7EA 4F07A 3V4HA 3E4VA 4HKHA 3BPKA 4YBNA 2D37A 1JNWA 3EC6A 2R0XA 4Y9IA 3HE1A 2IABA 5BNCA 3SWJA 4IRAA 3A6RA 3R5YA 1RZ1A 3A6QA 2D36A 2OL5A 3ZOEA 2A2JA 2RE7A 3KYFA 2FG9A 2FURA 2PTFA 2GUJA 1WLIA 3HY8A 3R5PA 3TGVA 1DNLA 2ECRA 2HHZA 1AXJA 1NRGA 3GASA 3RH7A 1W3PA 4HMWA 3K88A 4HX6A 2FHQA 3B5MA 1USFA 2I51A 1Y30A 1CI0A 3DB0A 3ZOHA 4YWNA 1RFEA 3U34A 1USCA 1FLMA 4N7RC 1VL7A 4QVBA 5JABA 3ZODA 3U0IA 3ZOCA 5CHOA 5CHEC 1YLNA 2Q9KA 1YOAA 1XHNA 3VY2A 2P5ZX 4ZKYA 1Y12A 2HTIA 4HMUA 5ESCA 3AMFA 3VYAA 2D5MA 3R5RA 4UHVA 3IN6A 2VPAA 4R82A 2RDEA 1I0SA 1W9AA 2QCKA 3DNHA 1W3QA 2AQ6A 3DMBA 3R5ZA 4TV4A 3PFTA 4XHYA 4HMTA 3R5WA 1I0RA 4W64A 3CB0A 2ECUA 2OU5A 4MTKA 2QEAA 4Z85A 1G79A 3KYGA 1RZ0A 3K86A 4HMSA 3R5LA 2K4QA 3FGEA 2HQ7A 4XJ2A 3ZOFA 3FKHA 2D38A 1W3OA 1W3RA 2X1KA 3BA3A 1EJEA 2NR4A 2ASFA 1T9MA 3H96A 3NFWA 3EAAA 1G76A 2R6VA 3U35A 3AWHA 3ZOGA 2IMLA 3K87A 2HQ9A 3HMZA 4L82A 1WLKA 1G77A 1WV4A 1XXOA 2L1TA
chains in the Genus database with same CATH topology
1TY9A 2ARZA 2I02A 4HMXA 3U5WA 2E83A 3A20A 2ED4A 3BNKA 1WGBA 2IG6A 2HTDA 3CP3A 4HMVA 2GJGA 3VY5A 2X1JA 1G78A 3F7EA 4F07A 3E4VA 3BPKA 4YBNA 2D37A 1JNWA 3EC6A 2R0XA 4Y9IA 2IABA 5BNCA 3SWJA 4IRAA 3A6RA 3R5YA 1RZ1A 3A6QA 2D36A 2OL5A 3ZOEA 2A2JA 2RE7A 3KYFA 2FG9A 2FURA 2PTFA 1WLIA 3HY8A 3R5PA 3TGVA 1DNLA 2ECRA 2HHZA 1AXJA 1NRGA 3GASA 3RH7A 1W3PA 4HMWA 4HX6A 2FHQA 3B5MA 1USFA 2I51A 1Y30A 1CI0A 3DB0A 3ZOHA 4YWNA 1RFEA 3U34A 1USCA 1FLMA 4N7RC 1VL7A 4QVBA 5JABA 3ZODA 3U0IA 3ZOCA 5CHOA 5CHEC 1YLNA 2Q9KA 1YOAA 1XHNA 3VY2A 4ZKYA 4HMUA 2HTIA 5ESCA 3AMFA 3VYAA 2D5MA 3R5RA 3IN6A 2VPAA 4R82A 2RDEA 1I0SA 1W9AA 2QCKA 3DNHA 1W3QA 2AQ6A 3DMBA 3R5ZA 3PFTA 4XHYA 4HMTA 3R5WA 1I0RA 3CB0A 2ECUA 2OU5A 4Z85A 2QEAA 1G79A 3KYGA 1RZ0A 3K86A 4HMSA 3R5LA 3FGEA 2HQ7A 4XJ2A 3ZOFA 3FKHA 2D38A 1W3OA 1W3RA 2X1KA 3BA3A 1EJEA 2NR4A 2ASFA 1T9MA 3H96A 3NFWA 1G76A 2R6VA 3U35A 3AWHA 3ZOGA 2IMLA 3K87A 2HQ9A 3HMZA 4L82A 1WLKA 1G77A 1WV4A 1XXOA 3K88A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TY9 A;  2ARZ A;  2I02 A;  4HMX A;  3U5W A;  2E83 A;  3A20 A;  2ED4 A;  3BNK A;  1WGB A;  2IG6 A;  2HTD A;  3CP3 A;  4HMV A;  2GJG A;  3VY5 A;  2X1J A;  1G78 A;  3F7E A;  4F07 A;  3E4V A;  3BPK A;  4YBN A;  2D37 A;  1JNW A;  3EC6 A;  2R0X A;  4Y9I A;  2IAB A;  5BNC A;  3SWJ A;  4IRA A;  3A6R A;  3R5Y A;  1RZ1 A;  3A6Q A;  2D36 A;  2OL5 A;  3ZOE A;  2A2J A;  2RE7 A;  3KYF A;  2FG9 A;  2FUR A;  2PTF A;  1WLI A;  3HY8 A;  3R5P A;  3TGV A;  1DNL A;  2ECR A;  2HHZ A;  1AXJ A;  1NRG A;  3GAS A;  3RH7 A;  1W3P A;  4HMW A;  4HX6 A;  2FHQ A;  3B5M A;  1USF A;  2I51 A;  1Y30 A;  1CI0 A;  3DB0 A;  3ZOH A;  4YWN A;  1RFE A;  3U34 A;  1USC A;  1FLM A;  4N7R C;  1VL7 A;  4QVB A;  5JAB A;  3ZOD A;  3U0I A;  3ZOC A;  5CHO A;  5CHE C;  1YLN A;  2Q9K A;  1YOA A;  1XHN A;  3VY2 A;  4ZKY A;  4HMU A;  2HTI A;  5ESC A;  3AMF A;  3VYA A;  2D5M A;  3R5R A;  3IN6 A;  2VPA A;  4R82 A;  2RDE A;  1I0S A;  1W9A A;  2QCK A;  3DNH A;  1W3Q A;  2AQ6 A;  3DMB A;  3R5Z A;  3PFT A;  4XHY A;  4HMT A;  3R5W A;  1I0R A;  3CB0 A;  2ECU A;  2OU5 A;  4Z85 A;  2QEA A;  1G79 A;  3KYG A;  1RZ0 A;  3K86 A;  4HMS A;  3R5L A;  3FGE A;  2HQ7 A;  4XJ2 A;  3ZOF A;  3FKH A;  2D38 A;  1W3O A;  1W3R A;  2X1K A;  3BA3 A;  1EJE A;  2NR4 A;  2ASF A;  1T9M A;  3H96 A;  3NFW A;  1G76 A;  2R6V A;  3U35 A;  3AWH A;  3ZOG A;  2IML A;  3K87 A;  2HQ9 A;  3HMZ A;  4L82 A;  1WLK A;  1G77 A;  1WV4 A;  1XXO A;  3K88 A; 
#chains in the Genus database with same CATH topology
 1TY9 A;  2ARZ A;  2I02 A;  4HMX A;  3U5W A;  2E83 A;  3A20 A;  2ED4 A;  3BNK A;  1WGB A;  2IG6 A;  2HTD A;  3CP3 A;  4HMV A;  2GJG A;  3VY5 A;  2X1J A;  1G78 A;  3F7E A;  4F07 A;  3V4H A;  3E4V A;  4HKH A;  3BPK A;  4YBN A;  2D37 A;  1JNW A;  3EC6 A;  2R0X A;  4Y9I A;  3HE1 A;  2IAB A;  5BNC A;  3SWJ A;  4IRA A;  3A6R A;  3R5Y A;  1RZ1 A;  3A6Q A;  2D36 A;  2OL5 A;  3ZOE A;  2A2J A;  2RE7 A;  3KYF A;  2FG9 A;  2FUR A;  2PTF A;  2GUJ A;  1WLI A;  3HY8 A;  3R5P A;  3TGV A;  1DNL A;  2ECR A;  2HHZ A;  1AXJ A;  1NRG A;  3GAS A;  3RH7 A;  1W3P A;  4HMW A;  3K88 A;  4HX6 A;  2FHQ A;  3B5M A;  1USF A;  2I51 A;  1Y30 A;  1CI0 A;  3DB0 A;  3ZOH A;  4YWN A;  1RFE A;  3U34 A;  1USC A;  1FLM A;  4N7R C;  1VL7 A;  4QVB A;  5JAB A;  3ZOD A;  3U0I A;  3ZOC A;  5CHO A;  5CHE C;  1YLN A;  2Q9K A;  1YOA A;  1XHN A;  3VY2 A;  2P5Z X;  4ZKY A;  1Y12 A;  2HTI A;  4HMU A;  5ESC A;  3AMF A;  3VYA A;  2D5M A;  3R5R A;  4UHV A;  3IN6 A;  2VPA A;  4R82 A;  2RDE A;  1I0S A;  1W9A A;  2QCK A;  3DNH A;  1W3Q A;  2AQ6 A;  3DMB A;  3R5Z A;  4TV4 A;  3PFT A;  4XHY A;  4HMT A;  3R5W A;  1I0R A;  4W64 A;  3CB0 A;  2ECU A;  2OU5 A;  4MTK A;  2QEA A;  4Z85 A;  1G79 A;  3KYG A;  1RZ0 A;  3K86 A;  4HMS A;  3R5L A;  2K4Q A;  3FGE A;  2HQ7 A;  4XJ2 A;  3ZOF A;  3FKH A;  2D38 A;  1W3O A;  1W3R A;  2X1K A;  3BA3 A;  1EJE A;  2NR4 A;  2ASF A;  1T9M A;  3H96 A;  3NFW A;  3EAA A;  1G76 A;  2R6V A;  3U35 A;  3AWH A;  3ZOG A;  2IML A;  3K87 A;  2HQ9 A;  3HMZ A;  4L82 A;  1WLK A;  1G77 A;  1WV4 A;  1XXO A;  2L1T A; 
#chains in the Genus database with same CATH homology
 1TY9 A;  2ARZ A;  2I02 A;  4HMX A;  3U5W A;  2E83 A;  3A20 A;  2ED4 A;  3BNK A;  1WGB A;  2IG6 A;  2HTD A;  3CP3 A;  4HMV A;  2GJG A;  3VY5 A;  2X1J A;  1G78 A;  3F7E A;  4F07 A;  3E4V A;  3BPK A;  4YBN A;  2D37 A;  1JNW A;  3EC6 A;  2R0X A;  4Y9I A;  2IAB A;  5BNC A;  3SWJ A;  4IRA A;  3A6R A;  3R5Y A;  1RZ1 A;  3A6Q A;  2D36 A;  2OL5 A;  3ZOE A;  2A2J A;  2RE7 A;  3KYF A;  2FG9 A;  2FUR A;  2PTF A;  1WLI A;  3HY8 A;  3R5P A;  3TGV A;  1DNL A;  2ECR A;  2HHZ A;  1AXJ A;  1NRG A;  3GAS A;  3RH7 A;  1W3P A;  4HMW A;  4HX6 A;  2FHQ A;  3B5M A;  1USF A;  2I51 A;  1Y30 A;  1CI0 A;  3DB0 A;  3ZOH A;  4YWN A;  1RFE A;  3U34 A;  1USC A;  1FLM A;  4N7R C;  1VL7 A;  4QVB A;  5JAB A;  3ZOD A;  3U0I A;  3ZOC A;  5CHO A;  5CHE C;  1YLN A;  2Q9K A;  1YOA A;  1XHN A;  3VY2 A;  4ZKY A;  4HMU A;  2HTI A;  5ESC A;  3AMF A;  3VYA A;  2D5M A;  3R5R A;  3IN6 A;  2VPA A;  4R82 A;  2RDE A;  1I0S A;  1W9A A;  2QCK A;  3DNH A;  1W3Q A;  2AQ6 A;  3DMB A;  3R5Z A;  3PFT A;  4XHY A;  4HMT A;  3R5W A;  1I0R A;  3CB0 A;  2ECU A;  2OU5 A;  4Z85 A;  2QEA A;  1G79 A;  3KYG A;  1RZ0 A;  3K86 A;  4HMS A;  3R5L A;  3FGE A;  2HQ7 A;  4XJ2 A;  3ZOF A;  3FKH A;  2D38 A;  1W3O A;  1W3R A;  2X1K A;  3BA3 A;  1EJE A;  2NR4 A;  2ASF A;  1T9M A;  3H96 A;  3NFW A;  1G76 A;  2R6V A;  3U35 A;  3AWH A;  3ZOG A;  2IML A;  3K87 A;  2HQ9 A;  3HMZ A;  4L82 A;  1WLK A;  1G77 A;  1WV4 A;  1XXO A;  3K88 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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