2ASSA

Crystal structure of the skp1-skp2-cks1 complex
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
159
structure length
143
Chain Sequence
ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell cycle/ligase/protein turnover
molecule keywords S-phase kinase-associated protein 1A
publication title Structural Basis of the Cks1-Dependent Recognition of p27(Kip1) by the SCF(Skp2) Ubiquitin Ligase.
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 143
sequence length 159
ec nomenclature
pdb deposition date 2005-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2assA00
4W9JB 1EODA 3ZUNB 3M8VA 3MKSA 1FQVB 2P1OA 4W9CB 2IZVC 4BGCA 5BXDA 4AWJB 3HTMA 3OGKA 4BKSB 2R9RB 1NEXA 3M5BA 4W9DB 4CXIA 2P1MA 4JTAB 1HV2A 3C6NA 4W9HB 4N9F5 4U77A 2YY9A 2ASSA 3ZRCB 3FKCA 2C9WC 2FNJC 5HZGC 4BKTB 3DCGB 2IF5A 1LQBB 2PPIA 3C6OA 4W9FB 1S1GA 4I6JC 4JGHC 3WSOB 1CS3A 3GA1A 4W9IB 3M52A 1A68A 4W9KB 1R2BA 2VPKA 3LUTB 2I2RA 4HXIA 2MA9C 1QDWA 2A79B 3LNMB 5H7HA 2ASTA 5FTAA 3M4TA 1EOEA 3C6PA 3BIMA 3ZKJB 2NZ0B 5H7GA 1FS1B 1T1DA 1DSXA 4UYIA 3OGLA 5DAFA 3OGMA 4U2MA 4B95B 4WQOC 3HVEA 1EOFA 2OVRA 2P1NA 3B84A 4U2NA 4CXJA 5IBKA 5BO4C 4CXTA 3ZTDB 3OHUA 1LM8C 2Q81A 5BXHA 5A6RA 3HU6A 1R29A 3OHVA 4JTDB 2JZ3C 3I3NA 4UIJA 4B9KE 5EUPA 4W9HH 1P22B 1BUOA 4CRHA 3HVEB 4W9GB 4ZOUA 1NN7A 2P1PA 2E32B 4APFA 5LLIB 4AJYC 3E4UA 1FS2B 2OVPA 4J8ZA 4B9KB 5A15A 3ZRFB 2E31B 5JH5B 3ZTCB 2VKPA 4AP2A 3DRZA 2P1QA 3ZNGB 3V7DA 5DADA 1EXBE 3LBZA 4EOZA 3KVTA 4CP3A 1R28A 4JTCB 5BXBA 1VCBB 1QDVA 2IHCA 4W9LB 5HYWB 3L2OA 3HQIA 2NN2A 4W9EB 2OVQA 2Z8HA 1LDKD
chains in the Genus database with same CATH superfamily
4W9JB 1EODA 3ZUNB 3M8VA 3MKSA 1FQVB 2P1OA 4W9CB 2IZVC 4BGCA 5BXDA 3DRXA 4AWJB 3HTMA 3OGKA 4BKSB 2R9RB 1NEXA 3M5BA 4W9DB 4CXIA 2P1MA 4JTAB 1HV2A 3C6NA 4W9HB 4N9F5 4U77A 2YY9A 2ASSA 3ZRCB 3FKCA 2C9WC 2FNJC 5HZGC 4BKTB 3DCGB 2IF5A 1LQBB 2PPIA 3C6OA 4W9FB 1S1GA 4I6JC 4JGHC 3WSOB 1CS3A 3GA1A 4W9IB 3M52A 1A68A 4W9KB 1R2BA 2VPKA 3LUTB 2I2RA 4HXIA 2MA9C 1QDWA 2A79B 3LNMB 5H7HA 2ASTA 5FTAA 4ZGCA 3M4TA 1EOEA 3C6PA 3BIMA 3ZKJB 2NZ0B 5H7GA 1FS1B 1T1DA 1DSXA 4UYIA 3OGLA 5DAFA 3OGMA 4U2MA 4B95B 4WQOC 3HVEA 1EOFA 2OVRA 2P1NA 3B84A 3DRYA 4U2NA 4CXJA 5IBKA 5BO4C 4CXTA 3ZTDB 3OHUA 1LM8C 2Q81A 5BXHA 5A6RA 3HU6A 1R29A 3OHVA 4JTDB 2JZ3C 3I3NA 4UIJA 4B9KE 5EUPA 4W9HH 1P22B 1BUOA 4CRHA 3HVEB 4W9GB 4ZOUA 1NN7A 2P1PA 2E32B 4APFA 5LLIB 4AJYC 3E4UA 1FS2B 2OVPA 4J8ZA 4B9KB 5A15A 3ZRFB 2E31B 5JH5B 3ZTCB 2VKPA 4AP2A 3DRZA 2P1QA 3ZNGB 3V7DA 5DADA 4YY8A 1EXBE 3LBZA 4EOZA 3KVTA 4CP3A 1R28A 4JTCB 5BXBA 1VCBB 1QDVA 2IHCA 4W9LB 5HYWB 3L2OA 3HQIA 2NN2A 4W9EB 2OVQA 2Z8HA 1LDKD
chains in the Genus database with same CATH topology
4W9JB 1EODA 3ZUNB 3M8VA 3MKSA 1FQVB 2P1OA 4W9CB 2IZVC 4BGCA 5BXDA 3DRXA 4AWJB 3HTMA 3OGKA 4BKSB 2R9RB 1NEXA 3M5BA 4W9DB 4CXIA 2P1MA 4JTAB 1HV2A 3C6NA 4W9HB 4N9F5 4U77A 2YY9A 2ASSA 3ZRCB 3FKCA 2C9WC 2FNJC 5HZGC 4BKTB 3DCGB 2IF5A 1LQBB 2PPIA 3C6OA 4W9FB 1S1GA 4I6JC 4JGHC 3WSOB 1CS3A 3GA1A 4W9IB 3M52A 1A68A 4W9KB 1R2BA 2VPKA 3LUTB 2I2RA 4HXIA 2MA9C 1QDWA 2A79B 3LNMB 5H7HA 2ASTA 5FTAA 4ZGCA 3M4TA 1EOEA 3C6PA 3BIMA 3ZKJB 2NZ0B 5H7GA 1FS1B 1T1DA 1DSXA 4UYIA 3OGLA 5DAFA 3OGMA 4U2MA 4B95B 4WQOC 3HVEA 1EOFA 2OVRA 2P1NA 3B84A 3DRYA 4U2NA 4CXJA 5IBKA 5BO4C 4CXTA 3ZTDB 3OHUA 1LM8C 2Q81A 5BXHA 5A6RA 3HU6A 1R29A 3OHVA 4JTDB 2JZ3C 3I3NA 4UIJA 4B9KE 5EUPA 4W9HH 1P22B 1BUOA 4CRHA 3HVEB 4W9GB 4ZOUA 1NN7A 2P1PA 2E32B 4APFA 5LLIB 4AJYC 3E4UA 1FS2B 2OVPA 4J8ZA 4B9KB 5A15A 3ZRFB 2E31B 5JH5B 3ZTCB 2VKPA 4AP2A 3DRZA 2P1QA 3ZNGB 3V7DA 5DADA 4YY8A 1EXBE 3LBZA 4EOZA 3KVTA 4CP3A 1R28A 4JTCB 5BXBA 1VCBB 1QDVA 2IHCA 4W9LB 5HYWB 3L2OA 3HQIA 2NN2A 4W9EB 2OVQA 2Z8HA 1LDKD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W9J B;  1EOD A;  3ZUN B;  3M8V A;  3MKS A;  1FQV B;  2P1O A;  4W9C B;  2IZV C;  4BGC A;  5BXD A;  4AWJ B;  3HTM A;  3OGK A;  4BKS B;  2R9R B;  1NEX A;  3M5B A;  4W9D B;  4CXI A;  2P1M A;  4JTA B;  1HV2 A;  3C6N A;  4W9H B;  4N9F 5;  4U77 A;  2YY9 A;  2ASS A;  3ZRC B;  3FKC A;  2C9W C;  2FNJ C;  5HZG C;  4BKT B;  3DCG B;  2IF5 A;  1LQB B;  2PPI A;  3C6O A;  4W9F B;  1S1G A;  4I6J C;  4JGH C;  3WSO B;  1CS3 A;  3GA1 A;  4W9I B;  3M52 A;  1A68 A;  4W9K B;  1R2B A;  2VPK A;  3LUT B;  2I2R A;  4HXI A;  2MA9 C;  1QDW A;  2A79 B;  3LNM B;  5H7H A;  2AST A;  5FTA A;  3M4T A;  1EOE A;  3C6P A;  3BIM A;  3ZKJ B;  2NZ0 B;  5H7G A;  1FS1 B;  1T1D A;  1DSX A;  4UYI A;  3OGL A;  5DAF A;  3OGM A;  4U2M A;  4B95 B;  4WQO C;  3HVE A;  1EOF A;  2OVR A;  2P1N A;  3B84 A;  4U2N A;  4CXJ A;  5IBK A;  5BO4 C;  4CXT A;  3ZTD B;  3OHU A;  1LM8 C;  2Q81 A;  5BXH A;  5A6R A;  3HU6 A;  1R29 A;  3OHV A;  4JTD B;  2JZ3 C;  3I3N A;  4UIJ A;  4B9K E;  5EUP A;  4W9H H;  1P22 B;  1BUO A;  4CRH A;  3HVE B;  4W9G B;  4ZOU A;  1NN7 A;  2P1P A;  2E32 B;  4APF A;  5LLI B;  4AJY C;  3E4U A;  1FS2 B;  2OVP A;  4J8Z A;  4B9K B;  5A15 A;  3ZRF B;  2E31 B;  5JH5 B;  3ZTC B;  2VKP A;  4AP2 A;  3DRZ A;  2P1Q A;  3ZNG B;  3V7D A;  5DAD A;  1EXB E;  3LBZ A;  4EOZ A;  3KVT A;  4CP3 A;  1R28 A;  4JTC B;  5BXB A;  1VCB B;  1QDV A;  2IHC A;  4W9L B;  5HYW B;  3L2O A;  3HQI A;  2NN2 A;  4W9E B;  2OVQ A;  2Z8H A;  1LDK D; 
#chains in the Genus database with same CATH topology
 4W9J B;  1EOD A;  3ZUN B;  3M8V A;  3MKS A;  1FQV B;  2P1O A;  4W9C B;  2IZV C;  4BGC A;  5BXD A;  3DRX A;  4AWJ B;  3HTM A;  3OGK A;  4BKS B;  2R9R B;  1NEX A;  3M5B A;  4W9D B;  4CXI A;  2P1M A;  4JTA B;  1HV2 A;  3C6N A;  4W9H B;  4N9F 5;  4U77 A;  2YY9 A;  2ASS A;  3ZRC B;  3FKC A;  2C9W C;  2FNJ C;  5HZG C;  4BKT B;  3DCG B;  2IF5 A;  1LQB B;  2PPI A;  3C6O A;  4W9F B;  1S1G A;  4I6J C;  4JGH C;  3WSO B;  1CS3 A;  3GA1 A;  4W9I B;  3M52 A;  1A68 A;  4W9K B;  1R2B A;  2VPK A;  3LUT B;  2I2R A;  4HXI A;  2MA9 C;  1QDW A;  2A79 B;  3LNM B;  5H7H A;  2AST A;  5FTA A;  4ZGC A;  3M4T A;  1EOE A;  3C6P A;  3BIM A;  3ZKJ B;  2NZ0 B;  5H7G A;  1FS1 B;  1T1D A;  1DSX A;  4UYI A;  3OGL A;  5DAF A;  3OGM A;  4U2M A;  4B95 B;  4WQO C;  3HVE A;  1EOF A;  2OVR A;  2P1N A;  3B84 A;  3DRY A;  4U2N A;  4CXJ A;  5IBK A;  5BO4 C;  4CXT A;  3ZTD B;  3OHU A;  1LM8 C;  2Q81 A;  5BXH A;  5A6R A;  3HU6 A;  1R29 A;  3OHV A;  4JTD B;  2JZ3 C;  3I3N A;  4UIJ A;  4B9K E;  5EUP A;  4W9H H;  1P22 B;  1BUO A;  4CRH A;  3HVE B;  4W9G B;  4ZOU A;  1NN7 A;  2P1P A;  2E32 B;  4APF A;  5LLI B;  4AJY C;  3E4U A;  1FS2 B;  2OVP A;  4J8Z A;  4B9K B;  5A15 A;  3ZRF B;  2E31 B;  5JH5 B;  3ZTC B;  2VKP A;  4AP2 A;  3DRZ A;  2P1Q A;  3ZNG B;  3V7D A;  5DAD A;  4YY8 A;  1EXB E;  3LBZ A;  4EOZ A;  3KVT A;  4CP3 A;  1R28 A;  4JTC B;  5BXB A;  1VCB B;  1QDV A;  2IHC A;  4W9L B;  5HYW B;  3L2O A;  3HQI A;  2NN2 A;  4W9E B;  2OVQ A;  2Z8H A;  1LDK D; 
#chains in the Genus database with same CATH homology
 4W9J B;  1EOD A;  3ZUN B;  3M8V A;  3MKS A;  1FQV B;  2P1O A;  4W9C B;  2IZV C;  4BGC A;  5BXD A;  3DRX A;  4AWJ B;  3HTM A;  3OGK A;  4BKS B;  2R9R B;  1NEX A;  3M5B A;  4W9D B;  4CXI A;  2P1M A;  4JTA B;  1HV2 A;  3C6N A;  4W9H B;  4N9F 5;  4U77 A;  2YY9 A;  2ASS A;  3ZRC B;  3FKC A;  2C9W C;  2FNJ C;  5HZG C;  4BKT B;  3DCG B;  2IF5 A;  1LQB B;  2PPI A;  3C6O A;  4W9F B;  1S1G A;  4I6J C;  4JGH C;  3WSO B;  1CS3 A;  3GA1 A;  4W9I B;  3M52 A;  1A68 A;  4W9K B;  1R2B A;  2VPK A;  3LUT B;  2I2R A;  4HXI A;  2MA9 C;  1QDW A;  2A79 B;  3LNM B;  5H7H A;  2AST A;  5FTA A;  4ZGC A;  3M4T A;  1EOE A;  3C6P A;  3BIM A;  3ZKJ B;  2NZ0 B;  5H7G A;  1FS1 B;  1T1D A;  1DSX A;  4UYI A;  3OGL A;  5DAF A;  3OGM A;  4U2M A;  4B95 B;  4WQO C;  3HVE A;  1EOF A;  2OVR A;  2P1N A;  3B84 A;  3DRY A;  4U2N A;  4CXJ A;  5IBK A;  5BO4 C;  4CXT A;  3ZTD B;  3OHU A;  1LM8 C;  2Q81 A;  5BXH A;  5A6R A;  3HU6 A;  1R29 A;  3OHV A;  4JTD B;  2JZ3 C;  3I3N A;  4UIJ A;  4B9K E;  5EUP A;  4W9H H;  1P22 B;  1BUO A;  4CRH A;  3HVE B;  4W9G B;  4ZOU A;  1NN7 A;  2P1P A;  2E32 B;  4APF A;  5LLI B;  4AJY C;  3E4U A;  1FS2 B;  2OVP A;  4J8Z A;  4B9K B;  5A15 A;  3ZRF B;  2E31 B;  5JH5 B;  3ZTC B;  2VKP A;  4AP2 A;  3DRZ A;  2P1Q A;  3ZNG B;  3V7D A;  5DAD A;  4YY8 A;  1EXB E;  3LBZ A;  4EOZ A;  3KVT A;  4CP3 A;  1R28 A;  4JTC B;  5BXB A;  1VCB B;  1QDV A;  2IHC A;  4W9L B;  5HYW B;  3L2O A;  3HQI A;  2NN2 A;  4W9E B;  2OVQ A;  2Z8H A;  1LDK D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...