2AU3A

Crystal structure of the aquifex aeolicus primase (zinc binding and rna polymerase domains)
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
403
structure length
403
Chain Sequence
MSSDIDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKISKDEKVYVALDRVCDFYRESLLKNREASEYVKSRGIDPKVARKFDLGYAPSSEALVKVLKENDLLEAYLETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFRYYLGFISDGVRRFALASEFHTKYKVPMEILLMKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA primase
publication title Crosstalk between primase subunits can act to regulate primer synthesis in trans.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 134
structure length 403
sequence length 403
ec nomenclature ec 2.7.7.-:
pdb deposition date 2005-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01807 zf-CHC2 CHC2 zinc finger
A PF08275 Toprim_N DNA primase catalytic core, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.50.30 Mainly Alpha Up-down Bundle Pheromone ER-1 Pheromone ER-1 2au3A04
3.40.1360.10 Alpha Beta 3-Layer(aba) Sandwich Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 2au3A03
3.90.580.10 Alpha Beta Alpha-Beta Complex DNA Primase; Chain A Zinc finger, CHC2-type domain 2au3A01
3.90.980.10 Alpha Beta Alpha-Beta Complex DNA primase DNAg catalytic core, N-terminal domain DNA primase, catalytic core, N-terminal domain 2au3A02
1D3YA 4EDGA 4EDKA 4EDTA 4EDVA 3VDPA 2AU3A 1EQNA 2ZBKA 1D0QA 4E2KA 1T6T1 2Q2EA 4EE1A 1DDEA 3VDUA 1DD9A 4O6OA 4EDRA 5GUJA 4JCVA 1VDDA 2V1CA 4O6PB 3VE5A 3B39A
chains in the Genus database with same CATH superfamily
4EDGA 1D3YA 2KC6A 4EDKA 4EDTA 4EDVA 3KXRA 3VDPA 2KK2A 2AU3A 2B39A 3CU7A 1EQNA 2ZBKA 1D0QA 4E2KA 1T6T1 2Q2EA 2FCJA 4EE1A 1DDEA 3VDUA 1ERCA 2I5RA 2LMKA 1DD9A 3KLSA 4O6OA 4EDRA 5GUJA 2NSVA 4JCVA 1VDDA 2NSWA 2V1CA 4O6PB 3VE5A 3B39A 2JMSA 2ERLA
chains in the Genus database with same CATH topology
4EDGA 1D3YA 2KC6A 4EDKA 4EDTA 4EDVA 3KXRA 3VDPA 2KK2A 2AU3A 2B39A 3CU7A 1EQNA 2ZBKA 1D0QA 4E2KA 1T6T1 2Q2EA 4EE1A 1DDEA 3VDUA 1ERCA 2LMKA 1DD9A 3KLSA 4O6OA 4EDRA 5GUJA 2NSVA 4JCVA 1VDDA 2NSWA 2V1CA 4O6PB 3VE5A 3B39A 2JMSA 2ERLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D3Y A;  4EDG A;  4EDK A;  4EDT A;  4EDV A;  3VDP A;  2AU3 A;  1EQN A;  2ZBK A;  1D0Q A;  4E2K A;  1T6T 1;  2Q2E A;  4EE1 A;  1DDE A;  3VDU A;  1DD9 A;  4O6O A;  4EDR A;  5GUJ A;  4JCV A;  1VDD A;  2V1C A;  4O6P B;  3VE5 A;  3B39 A; 
#chains in the Genus database with same CATH topology
 4EDG A;  1D3Y A;  2KC6 A;  4EDK A;  4EDT A;  4EDV A;  3KXR A;  3VDP A;  2KK2 A;  2AU3 A;  2B39 A;  3CU7 A;  1EQN A;  2ZBK A;  1D0Q A;  4E2K A;  1T6T 1;  2Q2E A;  2FCJ A;  4EE1 A;  1DDE A;  3VDU A;  1ERC A;  2I5R A;  2LMK A;  1DD9 A;  3KLS A;  4O6O A;  4EDR A;  5GUJ A;  2NSV A;  4JCV A;  1VDD A;  2NSW A;  2V1C A;  4O6P B;  3VE5 A;  3B39 A;  2JMS A;  2ERL A; 
#chains in the Genus database with same CATH homology
 4EDG A;  1D3Y A;  2KC6 A;  4EDK A;  4EDT A;  4EDV A;  3KXR A;  3VDP A;  2KK2 A;  2AU3 A;  2B39 A;  3CU7 A;  1EQN A;  2ZBK A;  1D0Q A;  4E2K A;  1T6T 1;  2Q2E A;  4EE1 A;  1DDE A;  3VDU A;  1ERC A;  2LMK A;  1DD9 A;  3KLS A;  4O6O A;  4EDR A;  5GUJ A;  2NSV A;  4JCV A;  1VDD A;  2NSW A;  2V1C A;  4O6P B;  3VE5 A;  3B39 A;  2JMS A;  2ERL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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