2AUSB

Crystal structure of the archaeal box h/aca srnp nop10-cbf5 complex
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
53
structure length
53
Chain Sequence
RIRKCPKCGRYTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKRELLGIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/structural protein
source organism Pyrococcus abyssi
publication title Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity
pubmed doi rcsb
molecule keywords pseudouridine synthase
total genus 7
structure length 53
sequence length 53
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04135 Nop10p Nucleolar RNA-binding protein, Nop10p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.40 Mainly Beta Single Sheet Rubrerythrin, domain 2 H/ACA ribonucleoprotein complex, subunit Nop10 2ausB00
2EY4E 3MQKB 3LWRB 3HJYB 2RFKB 3LWVB 2APOB 3LWPB 3HJWB 3HAXC 2AUSB 3LWQB 2AQCA 3LWOB 2HVYC
chains in the Genus database with same CATH superfamily
3S14L 3A44A 4JAGA 3HOZL 1I6HL 3H0GL 1T9OA 1VCXA 4TVMA 5EIOC 3SS2A 2XJRA 4A3IL 3QQCE 2ERJA 3HOWL 1QQTA 4X6AL 5IYDL 2ERSA 1YK5A 5C3EL 4JAFA 1LKPA 3M4OL 2B63L 5IY0A 4JAEA 3GTOL 3RZ6A 4A93L 3S16L 3HJWB 1VZHA 5GAEc 3P8BA 2M6OA 4BBSL 1QCVA 2XJVA 5AI2A 3PO2L 1C09A 3K7AL 2AUSB 4C3JL 3LWOB 3RYGA 4AHYA 1I50L 3H9BA 3GTJL 1P7PA 1R9TL 2NVTL 3RZOL 2NVXL 4ZN3B 1YUXA 4POGA 4Y52L 1PFWA 1RYTA 4QIWP 4AI1A 3HJYB 1Y1VL 5RXNA 5M5XL 2A6ED 1K83L 5C4JL 1CADA 1IU6A 1LTLA 1NXGA 1R0HA 2NVYL 2E2JL 1RWDA 2APOB 4A3JL 1FHHA 4AI3A 1BRFA 1TWGL 3MQKB 2XJTA 1PFUA 2HR5A 3B08B 1NXEA 3PO3L 2QL0A 4A3DL 5AI3A 4AYBP 2E2IL 2A68D 5FLML 2V0FA 3MPSA 1YK4A 1YUZA 3GTLL 4TPUA 1BFYA 3GTQL 3PL5A 5DM61 3LWRB 4A3LL 4LHLA 5C44L 4G6BA 2XJPA 2CKAA 2C6AA 3WWLA 4AR5A 1RYQA 2JI1A 3P2AA 3KYYA 2M4VA 3S15L 4Y7NL 2KKDA 1BE7A 1R0IA 4AR3A 7RXNA 1BQ9A 3RZDL 1VZGA 2A69D 2DSXA 2YU9L 2L0ZA 6RXNA 1T9PA 1B71A 3FDJA 3KYXA 3LNLA 5M3ML 3QVDA 4A3CL 1B13A 3S1QL 2Z3QB 4C3IL 5M3FL 4B8CD 4ZN1B 3S17L 2EY4E 3H3VM 3HKZP 5GAHc 2ZIXA 4AHXA 1TWCL 3HOUL 3CQZL 2Y0SP 3LWQB 3GTPL 2LCQA 1RB9A 4A3GL 2V0EA 1JYBA 2C6BA 8RXNA 4YWMA 4XXBB 4AI2A 4A3EL 5MLC3 2BE5D 1R0GA 2R7ZL 1B2OA 2A6HD 5GAGc 1SMMA 4LHNA 4POFA 5FJ8L 4UY81 5AN9H 1IROA 3PIO1 2M6PA 1IW7D 2WAQP 1ZRPA 5IYBL 1PZXA 3IU3I 4A3BL 1S2ZA 2K2DA 3M3YL 2E2HL 5M5YL 3PWFA 1SMWA 2PYAA 3I4ML 5MF6A 1Y1WL 2RFKB 4AR6A 5IP7L 4JADA 1YV1A 3H97A 4V196 1DX8A 2GMGA 3J7Y1 2AYJA 3HAXC 2PPTA 2NYDA 2JI2A 1SMUA 4BXXL 2PSMC 3S2DL 1LKMA 5EINC 2JA7L 3KYUA 3H9CA 3PKIA 5C4XL 2O5JD 2M4YA 1BQ8A 1F4LA 1OWBA 1TWFL 1QYBA 3HOXL 1TWHL 4BY1L 4WFN1 2Z3RB 1CAAA 1S24A 5H1Sc 2JA6L 5JVH1 4C2M1 2XJSA 4K9FA 5IYCL 4AHWA 2R92L 3PIP1 2KN9A 2XJQA 3LPEB 3VPBE 3FKIL 4ME3A 1OWCA 1IRNA 3I4NL 1Z92B 3WWNB 3KYVA 3S1ML 1PFVA 1WJVA 4AI0A 3HOYL 3ZG6A 1I3QL 2J9UB 5MFZA 5IP9L 1R0JA 4E6YA 1WCML 4GS7D 1RDGA 4A3KL 2CKCA 3LWVB 3S1NL 4BBRL 2XJUA 1S30A 3S1RL 3LWPB 2PVEA 5M5WL 1T9QA 3H99A 2JI3A 4RXNA 4U671 2R93L 2MS3A 2PVXA 4AHZA 3GTGL 2NVQL 5JVG1 4XGHA 1NNQA 2JA8L 1E8JA 2AQCA 3JR7A 2CR8A 3NFPI 1FHMA 1B2JA 2VL6A 2JA5L 1VZIA 3MSUA 3GTML 1SFOL 2VUML 3GTKL 1R0FA 3RZTA 4C3HL 3J7Z1 2B5ID 3S2HL 2WB1P 5MGNA 4BY7L 1H7VA 2PMZP 2HVYC 1LKOA 3PZAA 5DM71 2H12A 5GADc 4A3FL 3HOVL 3PKJA 4A3ML 3B0AB 1ODHA 2RDVA 5K2ME 4YWLA 3KYWA 3K35A 1TWAL 5MFPA 2V3BB 1PFYA 4AR4A 1IU5A 1RDVA 1DVBA
chains in the Genus database with same CATH topology
2EY4E 3MQKB 3LWRB 3HJYB 2RFKB 3LWVB 2APOB 3LWPB 3HJWB 3HAXC 2AUSB 3LWQB 2AQCA 3LWOB 2HVYC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EY4 E;  3MQK B;  3LWR B;  3HJY B;  2RFK B;  3LWV B;  2APO B;  3LWP B;  3HJW B;  3HAX C;  2AUS B;  3LWQ B;  2AQC A;  3LWO B;  2HVY C; 
#chains in the Genus database with same CATH topology
 3S14 L;  3A44 A;  4JAG A;  3HOZ L;  1I6H L;  3H0G L;  1T9O A;  1VCX A;  4TVM A;  5EIO C;  3SS2 A;  2XJR A;  4A3I L;  3QQC E;  2ERJ A;  3HOW L;  1QQT A;  4X6A L;  5IYD L;  2ERS A;  1YK5 A;  5C3E L;  4JAF A;  1LKP A;  3M4O L;  2B63 L;  5IY0 A;  4JAE A;  3GTO L;  3RZ6 A;  4A93 L;  3S16 L;  3HJW B;  1VZH A;  5GAE c;  3P8B A;  2M6O A;  4BBS L;  1QCV A;  2XJV A;  5AI2 A;  3PO2 L;  1C09 A;  3K7A L;  2AUS B;  4C3J L;  3LWO B;  3RYG A;  4AHY A;  1I50 L;  3H9B A;  3GTJ L;  1P7P A;  1R9T L;  2NVT L;  3RZO L;  2NVX L;  4ZN3 B;  1YUX A;  4POG A;  4Y52 L;  1PFW A;  1RYT A;  4QIW P;  4AI1 A;  3HJY B;  1Y1V L;  5RXN A;  5M5X L;  2A6E D;  1K83 L;  5C4J L;  1CAD A;  1IU6 A;  1LTL A;  1NXG A;  1R0H A;  2NVY L;  2E2J L;  1RWD A;  2APO B;  4A3J L;  1FHH A;  4AI3 A;  1BRF A;  1TWG L;  3MQK B;  2XJT A;  1PFU A;  2HR5 A;  3B08 B;  1NXE A;  3PO3 L;  2QL0 A;  4A3D L;  5AI3 A;  4AYB P;  2E2I L;  2A68 D;  5FLM L;  2V0F A;  3MPS A;  1YK4 A;  1YUZ A;  3GTL L;  4TPU A;  1BFY A;  3GTQ L;  3PL5 A;  5DM6 1;  3LWR B;  4A3L L;  4LHL A;  5C44 L;  4G6B A;  2XJP A;  2CKA A;  2C6A A;  3WWL A;  4AR5 A;  1RYQ A;  2JI1 A;  3P2A A;  3KYY A;  2M4V A;  3S15 L;  4Y7N L;  2KKD A;  1BE7 A;  1R0I A;  4AR3 A;  7RXN A;  1BQ9 A;  3RZD L;  1VZG A;  2A69 D;  2DSX A;  2YU9 L;  2L0Z A;  6RXN A;  1T9P A;  1B71 A;  3FDJ A;  3KYX A;  3LNL A;  5M3M L;  3QVD A;  4A3C L;  1B13 A;  3S1Q L;  2Z3Q B;  4C3I L;  5M3F L;  4B8C D;  4ZN1 B;  3S17 L;  2EY4 E;  3H3V M;  3HKZ P;  5GAH c;  2ZIX A;  4AHX A;  1TWC L;  3HOU L;  3CQZ L;  2Y0S P;  3LWQ B;  3GTP L;  2LCQ A;  1RB9 A;  4A3G L;  2V0E A;  1JYB A;  2C6B A;  8RXN A;  4YWM A;  4XXB B;  4AI2 A;  4A3E L;  5MLC 3;  2BE5 D;  1R0G A;  2R7Z L;  1B2O A;  2A6H D;  5GAG c;  1SMM A;  4LHN A;  4POF A;  5FJ8 L;  4UY8 1;  5AN9 H;  1IRO A;  3PIO 1;  2M6P A;  1IW7 D;  2WAQ P;  1ZRP A;  5IYB L;  1PZX A;  3IU3 I;  4A3B L;  1S2Z A;  2K2D A;  3M3Y L;  2E2H L;  5M5Y L;  3PWF A;  1SMW A;  2PYA A;  3I4M L;  5MF6 A;  1Y1W L;  2RFK B;  4AR6 A;  5IP7 L;  4JAD A;  1YV1 A;  3H97 A;  4V19 6;  1DX8 A;  2GMG A;  3J7Y 1;  2AYJ A;  3HAX C;  2PPT A;  2NYD A;  2JI2 A;  1SMU A;  4BXX L;  2PSM C;  3S2D L;  1LKM A;  5EIN C;  2JA7 L;  3KYU A;  3H9C A;  3PKI A;  5C4X L;  2O5J D;  2M4Y A;  1BQ8 A;  1F4L A;  1OWB A;  1TWF L;  1QYB A;  3HOX L;  1TWH L;  4BY1 L;  4WFN 1;  2Z3R B;  1CAA A;  1S24 A;  5H1S c;  2JA6 L;  5JVH 1;  4C2M 1;  2XJS A;  4K9F A;  5IYC L;  4AHW A;  2R92 L;  3PIP 1;  2KN9 A;  2XJQ A;  3LPE B;  3VPB E;  3FKI L;  4ME3 A;  1OWC A;  1IRN A;  3I4N L;  1Z92 B;  3WWN B;  3KYV A;  3S1M L;  1PFV A;  1WJV A;  4AI0 A;  3HOY L;  3ZG6 A;  1I3Q L;  2J9U B;  5MFZ A;  5IP9 L;  1R0J A;  4E6Y A;  1WCM L;  4GS7 D;  1RDG A;  4A3K L;  2CKC A;  3LWV B;  3S1N L;  4BBR L;  2XJU A;  1S30 A;  3S1R L;  3LWP B;  2PVE A;  5M5W L;  1T9Q A;  3H99 A;  2JI3 A;  4RXN A;  4U67 1;  2R93 L;  2MS3 A;  2PVX A;  4AHZ A;  3GTG L;  2NVQ L;  5JVG 1;  4XGH A;  1NNQ A;  2JA8 L;  1E8J A;  2AQC A;  3JR7 A;  2CR8 A;  3NFP I;  1FHM A;  1B2J A;  2VL6 A;  2JA5 L;  1VZI A;  3MSU A;  3GTM L;  1SFO L;  2VUM L;  3GTK L;  1R0F A;  3RZT A;  4C3H L;  3J7Z 1;  2B5I D;  3S2H L;  2WB1 P;  5MGN A;  4BY7 L;  1H7V A;  2PMZ P;  2HVY C;  1LKO A;  3PZA A;  5DM7 1;  2H12 A;  5GAD c;  4A3F L;  3HOV L;  3PKJ A;  4A3M L;  3B0A B;  1ODH A;  2RDV A;  5K2M E;  4YWL A;  3KYW A;  3K35 A;  1TWA L;  5MFP A;  2V3B B;  1PFY A;  4AR4 A;  1IU5 A;  1RDV A;  1DVB A; 
#chains in the Genus database with same CATH homology
 2EY4 E;  3MQK B;  3LWR B;  3HJY B;  2RFK B;  3LWV B;  2APO B;  3LWP B;  3HJW B;  3HAX C;  2AUS B;  3LWQ B;  2AQC A;  3LWO B;  2HVY C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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