2AYQA

3-isopropylmalate dehydrogenase from the moderate facultative thermophile, bacillus coagulans
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
356
structure length
356
Chain Sequence
MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords 3-ISOPROPYLMALATE DEHYDROGENASE
publication title Crystal structure of 3-isopropylmalate dehydrogenase from the moderate facultative thermophile, Bacillus coagulans: two strategies for thermostabilization of protein structures.
pubmed rcsb
source organism Bacillus coagulans
total genus 122
structure length 356
sequence length 356
chains with identical sequence B
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 1998-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 2ayqA00
1GRPA 4I3LA 3MARA 4L04A 1HEXA 4KZOA 1W0DA 1U7NA 2ZTWA 1BL5A 4AOYA 4UMYA 1OSJA 5GRHB 4BNPA 1CW1A 3US8A 3TY4A 5J33A 1CW7A 2UXRA 2Y42A 3UDOA 1WPWA 5K10A 1XGVA 1IDMA 1IDEA 1XAAA 4AOUA 4P69C 4UMXA 1IDDA 1T09A 3ICDA 2QFVA 5GREA 1WALA 1IPDA 2HI1A 4Y1PA 1TYOA 3INMA 4I3KA 5GRLB 1IDFA 5GRIB 4L06A 3BLVA 5HN6A 3MASB 3VKZA 4ATYA 4AJSA 4AOVA 5GRFB 4AJRA 5ICDA 1XABA 2E5MA 2QFYA 4AJBA 3FLKA 2DHTA 1XACA 4AJCA 5I95A 5L58A 7ICDA 1HJ6A 9ICDA 4HCXA 4L03A 3TSNA 1PTMA 1CM7A 3BLXB 2QFWA 5L57A 3LCBC 3DMSA 4WUOA 5HN5A 1CNZA 3VL3A 4AJAA 1AI2A 3U9EA 5K11A 1V5BA 2QFXA 1X0LA 1IKAA 1YCOA 1HQSA 1XADA 3VMJA 2D4VA 5J34A 1GROA 1CW4A 1ZORA 2AYQA 2Y3ZA 4XRXA 1V53A 1V94A 1GC9A 5GRHA 1ISOA 1R8KA 3ASJA 1VLCA 1YXOA 5GREB 3UF6A 8ICDA 6ICDA 3VL4A 1GC8A 1PB3A 2G4OA 2UXQA 3LXYA 1P8FA 1PS6A 3FMXX 1XKDA 4ICDA 1DR8A 1G2UA 2Y41A 3WZWA 3BLVB 5DE1A 1A05A 5GRLA 5HN4A 3TNGA 5I96A 5GRIA 1LWDA 2E0CA 2Y40A 4YB4A 5HN3A 3VMKA 4F7IA 2IV0A 3MASA 1PB1A 4XS3A 5J32A 1T0LA 5GRFA 4AJ3A 3U1HA 4XXVA 3MAPA 4JA8A 1OSIA 3VMLA 3VL7A 3R8WA 3WZXA 1IDCA 3WZYA 3AH3A 4IWHA 3WZVA 1DPZA 3BLXA 3UDUA 1AI3A 3VL2A 5LGEA 3VL6A 1DR0A 4JQPA 1SJSA 2D1CA 3TY3A 1VI1A 1PS7A
chains in the Genus database with same CATH superfamily
1GRPA 4I3LA 3MARA 4L04A 1HEXA 4KZOA 1W0DA 1U7NA 2ZTWA 1BL5A 4AOYA 4UMYA 1OSJA 5GRHB 4BNPA 1CW1A 3US8A 3TY4A 5J33A 1CW7A 2UXRA 2Y42A 3UDOA 1WPWA 5K10A 1XGVA 1IDMA 1IDEA 1XAAA 4AOUA 4P69C 4UMXA 1IDDA 1T09A 3ICDA 2QFVA 5GREA 1WALA 1IPDA 2HI1A 4Y1PA 1TYOA 3INMA 4I3KA 5GRLB 1IDFA 5GRIB 4L06A 3BLVA 5HN6A 3MASB 3VKZA 4ATYA 4AJSA 4AOVA 5GRFB 4AJRA 5ICDA 1XABA 2E5MA 2QFYA 4AJBA 3FLKA 2DHTA 1XACA 4AJCA 5I95A 5L58A 7ICDA 1HJ6A 9ICDA 4HCXA 4L03A 3TSNA 1PTMA 1CM7A 3BLXB 2QFWA 5L57A 3LCBC 3DMSA 4WUOA 5HN5A 1CNZA 3VL3A 4AJAA 1AI2A 3U9EA 5K11A 1V5BA 2QFXA 1X0LA 1IKAA 1YCOA 1HQSA 1XADA 3VMJA 2D4VA 5J34A 1GROA 1CW4A 1ZORA 2AYQA 2Y3ZA 4XRXA 1V53A 1V94A 1GC9A 5GRHA 1ISOA 1R8KA 3ASJA 1VLCA 1YXOA 5GREB 3UF6A 8ICDA 6ICDA 3VL4A 1GC8A 1PB3A 2G4OA 2UXQA 3LXYA 1P8FA 1PS6A 3FMXX 1XKDA 4ICDA 1DR8A 1G2UA 2Y41A 3WZWA 3BLVB 5DE1A 1A05A 5GRLA 5HN4A 3TNGA 5I96A 5GRIA 1LWDA 2E0CA 2Y40A 4YB4A 5HN3A 3VMKA 4F7IA 2IV0A 3MASA 1PB1A 4XS3A 5J32A 1T0LA 5GRFA 4AJ3A 3U1HA 4XXVA 3MAPA 4JA8A 1OSIA 3VMLA 3VL7A 3R8WA 3WZXA 1IDCA 3WZYA 3AH3A 4IWHA 3WZVA 1DPZA 3BLXA 3UDUA 1AI3A 3VL2A 5LGEA 3VL6A 1DR0A 4JQPA 1SJSA 2D1CA 3TY3A 1VI1A 1PS7A
chains in the Genus database with same CATH topology
1GRPA 4I3LA 3MARA 4L04A 1HEXA 4KZOA 1W0DA 1U7NA 2ZTWA 1BL5A 4AOYA 4UMYA 1OSJA 5GRHB 4BNPA 1CW1A 3US8A 3TY4A 5J33A 1CW7A 2UXRA 2Y42A 3UDOA 1WPWA 5K10A 1XGVA 1IDMA 1IDEA 1XAAA 4AOUA 4P69C 4UMXA 1IDDA 1T09A 3ICDA 2QFVA 5GREA 1WALA 1IPDA 2HI1A 4Y1PA 1TYOA 3INMA 4I3KA 5GRLB 1IDFA 5GRIB 4L06A 3BLVA 5HN6A 3MASB 3VKZA 4ATYA 4AJSA 4AOVA 5GRFB 4AJRA 5ICDA 1XABA 2E5MA 2QFYA 4AJBA 3FLKA 2DHTA 1XACA 4AJCA 5I95A 5L58A 7ICDA 1HJ6A 9ICDA 4HCXA 4L03A 3TSNA 1PTMA 1CM7A 3BLXB 2QFWA 5L57A 3LCBC 3DMSA 4WUOA 5HN5A 1CNZA 3VL3A 4AJAA 1AI2A 3U9EA 5K11A 1V5BA 2QFXA 1X0LA 1IKAA 1YCOA 1HQSA 1XADA 3VMJA 2D4VA 5J34A 1GROA 1CW4A 1ZORA 2AYQA 2Y3ZA 4XRXA 1V53A 1V94A 1GC9A 5GRHA 1ISOA 1R8KA 3ASJA 1VLCA 1YXOA 5GREB 3UF6A 8ICDA 6ICDA 3VL4A 1GC8A 1PB3A 2G4OA 2UXQA 3LXYA 1P8FA 1PS6A 3FMXX 1XKDA 4ICDA 1DR8A 1G2UA 2Y41A 3WZWA 3BLVB 5DE1A 1A05A 5GRLA 5HN4A 3TNGA 5I96A 5GRIA 1LWDA 2E0CA 2Y40A 4YB4A 5HN3A 3VMKA 4F7IA 2IV0A 3MASA 1PB1A 4XS3A 5J32A 1T0LA 5GRFA 4AJ3A 3U1HA 4XXVA 3MAPA 4JA8A 1OSIA 3VMLA 3VL7A 3R8WA 3WZXA 1IDCA 3WZYA 3AH3A 4IWHA 3WZVA 1DPZA 3BLXA 3UDUA 1AI3A 3VL2A 5LGEA 3VL6A 1DR0A 4JQPA 1SJSA 2D1CA 3TY3A 1VI1A 1PS7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GRP A;  4I3L A;  3MAR A;  4L04 A;  1HEX A;  4KZO A;  1W0D A;  1U7N A;  2ZTW A;  1BL5 A;  4AOY A;  4UMY A;  1OSJ A;  5GRH B;  4BNP A;  1CW1 A;  3US8 A;  3TY4 A;  5J33 A;  1CW7 A;  2UXR A;  2Y42 A;  3UDO A;  1WPW A;  5K10 A;  1XGV A;  1IDM A;  1IDE A;  1XAA A;  4AOU A;  4P69 C;  4UMX A;  1IDD A;  1T09 A;  3ICD A;  2QFV A;  5GRE A;  1WAL A;  1IPD A;  2HI1 A;  4Y1P A;  1TYO A;  3INM A;  4I3K A;  5GRL B;  1IDF A;  5GRI B;  4L06 A;  3BLV A;  5HN6 A;  3MAS B;  3VKZ A;  4ATY A;  4AJS A;  4AOV A;  5GRF B;  4AJR A;  5ICD A;  1XAB A;  2E5M A;  2QFY A;  4AJB A;  3FLK A;  2DHT A;  1XAC A;  4AJC A;  5I95 A;  5L58 A;  7ICD A;  1HJ6 A;  9ICD A;  4HCX A;  4L03 A;  3TSN A;  1PTM A;  1CM7 A;  3BLX B;  2QFW A;  5L57 A;  3LCB C;  3DMS A;  4WUO A;  5HN5 A;  1CNZ A;  3VL3 A;  4AJA A;  1AI2 A;  3U9E A;  5K11 A;  1V5B A;  2QFX A;  1X0L A;  1IKA A;  1YCO A;  1HQS A;  1XAD A;  3VMJ A;  2D4V A;  5J34 A;  1GRO A;  1CW4 A;  1ZOR A;  2AYQ A;  2Y3Z A;  4XRX A;  1V53 A;  1V94 A;  1GC9 A;  5GRH A;  1ISO A;  1R8K A;  3ASJ A;  1VLC A;  1YXO A;  5GRE B;  3UF6 A;  8ICD A;  6ICD A;  3VL4 A;  1GC8 A;  1PB3 A;  2G4O A;  2UXQ A;  3LXY A;  1P8F A;  1PS6 A;  3FMX X;  1XKD A;  4ICD A;  1DR8 A;  1G2U A;  2Y41 A;  3WZW A;  3BLV B;  5DE1 A;  1A05 A;  5GRL A;  5HN4 A;  3TNG A;  5I96 A;  5GRI A;  1LWD A;  2E0C A;  2Y40 A;  4YB4 A;  5HN3 A;  3VMK A;  4F7I A;  2IV0 A;  3MAS A;  1PB1 A;  4XS3 A;  5J32 A;  1T0L A;  5GRF A;  4AJ3 A;  3U1H A;  4XXV A;  3MAP A;  4JA8 A;  1OSI A;  3VML A;  3VL7 A;  3R8W A;  3WZX A;  1IDC A;  3WZY A;  3AH3 A;  4IWH A;  3WZV A;  1DPZ A;  3BLX A;  3UDU A;  1AI3 A;  3VL2 A;  5LGE A;  3VL6 A;  1DR0 A;  4JQP A;  1SJS A;  2D1C A;  3TY3 A;  1VI1 A;  1PS7 A; 
#chains in the Genus database with same CATH topology
 1GRP A;  4I3L A;  3MAR A;  4L04 A;  1HEX A;  4KZO A;  1W0D A;  1U7N A;  2ZTW A;  1BL5 A;  4AOY A;  4UMY A;  1OSJ A;  5GRH B;  4BNP A;  1CW1 A;  3US8 A;  3TY4 A;  5J33 A;  1CW7 A;  2UXR A;  2Y42 A;  3UDO A;  1WPW A;  5K10 A;  1XGV A;  1IDM A;  1IDE A;  1XAA A;  4AOU A;  4P69 C;  4UMX A;  1IDD A;  1T09 A;  3ICD A;  2QFV A;  5GRE A;  1WAL A;  1IPD A;  2HI1 A;  4Y1P A;  1TYO A;  3INM A;  4I3K A;  5GRL B;  1IDF A;  5GRI B;  4L06 A;  3BLV A;  5HN6 A;  3MAS B;  3VKZ A;  4ATY A;  4AJS A;  4AOV A;  5GRF B;  4AJR A;  5ICD A;  1XAB A;  2E5M A;  2QFY A;  4AJB A;  3FLK A;  2DHT A;  1XAC A;  4AJC A;  5I95 A;  5L58 A;  7ICD A;  1HJ6 A;  9ICD A;  4HCX A;  4L03 A;  3TSN A;  1PTM A;  1CM7 A;  3BLX B;  2QFW A;  5L57 A;  3LCB C;  3DMS A;  4WUO A;  5HN5 A;  1CNZ A;  3VL3 A;  4AJA A;  1AI2 A;  3U9E A;  5K11 A;  1V5B A;  2QFX A;  1X0L A;  1IKA A;  1YCO A;  1HQS A;  1XAD A;  3VMJ A;  2D4V A;  5J34 A;  1GRO A;  1CW4 A;  1ZOR A;  2AYQ A;  2Y3Z A;  4XRX A;  1V53 A;  1V94 A;  1GC9 A;  5GRH A;  1ISO A;  1R8K A;  3ASJ A;  1VLC A;  1YXO A;  5GRE B;  3UF6 A;  8ICD A;  6ICD A;  3VL4 A;  1GC8 A;  1PB3 A;  2G4O A;  2UXQ A;  3LXY A;  1P8F A;  1PS6 A;  3FMX X;  1XKD A;  4ICD A;  1DR8 A;  1G2U A;  2Y41 A;  3WZW A;  3BLV B;  5DE1 A;  1A05 A;  5GRL A;  5HN4 A;  3TNG A;  5I96 A;  5GRI A;  1LWD A;  2E0C A;  2Y40 A;  4YB4 A;  5HN3 A;  3VMK A;  4F7I A;  2IV0 A;  3MAS A;  1PB1 A;  4XS3 A;  5J32 A;  1T0L A;  5GRF A;  4AJ3 A;  3U1H A;  4XXV A;  3MAP A;  4JA8 A;  1OSI A;  3VML A;  3VL7 A;  3R8W A;  3WZX A;  1IDC A;  3WZY A;  3AH3 A;  4IWH A;  3WZV A;  1DPZ A;  3BLX A;  3UDU A;  1AI3 A;  3VL2 A;  5LGE A;  3VL6 A;  1DR0 A;  4JQP A;  1SJS A;  2D1C A;  3TY3 A;  1VI1 A;  1PS7 A; 
#chains in the Genus database with same CATH homology
 1GRP A;  4I3L A;  3MAR A;  4L04 A;  1HEX A;  4KZO A;  1W0D A;  1U7N A;  2ZTW A;  1BL5 A;  4AOY A;  4UMY A;  1OSJ A;  5GRH B;  4BNP A;  1CW1 A;  3US8 A;  3TY4 A;  5J33 A;  1CW7 A;  2UXR A;  2Y42 A;  3UDO A;  1WPW A;  5K10 A;  1XGV A;  1IDM A;  1IDE A;  1XAA A;  4AOU A;  4P69 C;  4UMX A;  1IDD A;  1T09 A;  3ICD A;  2QFV A;  5GRE A;  1WAL A;  1IPD A;  2HI1 A;  4Y1P A;  1TYO A;  3INM A;  4I3K A;  5GRL B;  1IDF A;  5GRI B;  4L06 A;  3BLV A;  5HN6 A;  3MAS B;  3VKZ A;  4ATY A;  4AJS A;  4AOV A;  5GRF B;  4AJR A;  5ICD A;  1XAB A;  2E5M A;  2QFY A;  4AJB A;  3FLK A;  2DHT A;  1XAC A;  4AJC A;  5I95 A;  5L58 A;  7ICD A;  1HJ6 A;  9ICD A;  4HCX A;  4L03 A;  3TSN A;  1PTM A;  1CM7 A;  3BLX B;  2QFW A;  5L57 A;  3LCB C;  3DMS A;  4WUO A;  5HN5 A;  1CNZ A;  3VL3 A;  4AJA A;  1AI2 A;  3U9E A;  5K11 A;  1V5B A;  2QFX A;  1X0L A;  1IKA A;  1YCO A;  1HQS A;  1XAD A;  3VMJ A;  2D4V A;  5J34 A;  1GRO A;  1CW4 A;  1ZOR A;  2AYQ A;  2Y3Z A;  4XRX A;  1V53 A;  1V94 A;  1GC9 A;  5GRH A;  1ISO A;  1R8K A;  3ASJ A;  1VLC A;  1YXO A;  5GRE B;  3UF6 A;  8ICD A;  6ICD A;  3VL4 A;  1GC8 A;  1PB3 A;  2G4O A;  2UXQ A;  3LXY A;  1P8F A;  1PS6 A;  3FMX X;  1XKD A;  4ICD A;  1DR8 A;  1G2U A;  2Y41 A;  3WZW A;  3BLV B;  5DE1 A;  1A05 A;  5GRL A;  5HN4 A;  3TNG A;  5I96 A;  5GRI A;  1LWD A;  2E0C A;  2Y40 A;  4YB4 A;  5HN3 A;  3VMK A;  4F7I A;  2IV0 A;  3MAS A;  1PB1 A;  4XS3 A;  5J32 A;  1T0L A;  5GRF A;  4AJ3 A;  3U1H A;  4XXV A;  3MAP A;  4JA8 A;  1OSI A;  3VML A;  3VL7 A;  3R8W A;  3WZX A;  1IDC A;  3WZY A;  3AH3 A;  4IWH A;  3WZV A;  1DPZ A;  3BLX A;  3UDU A;  1AI3 A;  3VL2 A;  5LGE A;  3VL6 A;  1DR0 A;  4JQP A;  1SJS A;  2D1C A;  3TY3 A;  1VI1 A;  1PS7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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