2B1XA

Crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
441
structure length
441
Chain Sequence
MLSNELRQTLQKGLHDVNSDWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELGLAPPDPQFALYGEHIHTGHGHGLGIIGPPPGMPLPEFMGLPENIVEELERRLTPEQVEIFRPTAFIHGTVFPNLSIGNFLMGKDHLSAPTAFLTLRLWHPLGPDKMEVMSFFLVEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMGGQFAKTGELNYQMGRGVLEPDPNWTGPGEAYPLDYAEANQRNFLEYWMQLMLAESPL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords naphthalene dioxygenase large subunit
publication title Structure and Increased Thermostability of Rhodococcus sp. Naphthalene 1,2-Dioxygenase.
pubmed doi rcsb
total genus 146
structure length 441
sequence length 441
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2005-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2b1xA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2b1xA01
1SQVE 1ULJA 3H1KE 2D2CD 2QJKC 4NBBD 2HMLA 3GKEA 4PV1D 2HMMA 2BMRA 3GZXA 1NTKE 4PD4E 2HMOA 4NB8D 2Q3WA 1L0NE 2XR8A 4EMJB 2I7FA 1L0LE 1KB9E 3L75E 2HMKA 1WW9A 4H44D 2ZYLA 3CWBE 3GZYA 2DE5A 2QJYC 3VMID 2XSOA 2E75D 4HM6A 2YVJB 1Q90C 2E4PA 2B24A 4NBHA 1O7NA 4HM8A 4NBAD 1Z03A 1P84E 4NBED 1WQLA 1O7GA 1NDOA 3H1IE 3VMHA 2XRXA 4QDFB 2NWFA 3DQYA 1SQQE 5BOKA 1Z01A 3L73E 4HM5A 1PPJE 4QCKA 2GBXA 4NBCA 2YFLA 1PP9E 1NTZE 3CXHE 1O7WA 4HM2A 2A06E 3TGUE 4HM0A 2DE5D 2YFJA 1SQBE 2E4QA 3GTEA 4NBGA 3L70E 1UUWA 2B1XA 1NU1E 1RFSA 4QDFA 3GL2A 3VMGA 5AEUA 1FQTA 2GBWA 4HJLA 1EZVE 2E74D 5KKZC 2DE7A 4NBDA 4P1BH 4HM3A 4NB9A 2NVEA 4NBCD 1G8KB 2BMOA 1UUVA 4NBFA 4QURA 4QUQA 2QJPC 1JM1A 2DE6A 5HL4A 4AAYB 1NYKA 3D89A 1BE3E 2BCCE 1RIEA 3L74E 1ZRTE 5KLIC 3AZCA 3FOUA 1O7MA 1KYOE 4HM7A 4U3FE 4P1CH 4AIVA 1VCKA 3VCPA 1SQXE 1NTME 1BCCE 2NUKA 2HMJA 4H0LD 4NBGD 3CX5E 4HM4A 3VMGD 3BCCE 4HM1A 3L72E 2YFIA 3VCAA 2HMNA 3H1HE 4NBHD 2NUMA 2NVGA 4NBDD 1ULIA 1EG9A 3VMHD 1SQPE 4NBEA 2YIUC 3GOBA 4NB9D 3N0QA 4QDCA 4NBFD 2XSHA 2ZT9D 2DE6D 2E76D 4NBBA 3H1LE 4H13D 3H1JE 2BMQA 2CKFA 2FYNC 2JO6A 2QPZA 1Z02A 3GTSA 4NB8A 3GKQA 1G8JB 1O7PA 1VF5D 5KLVE 3GB4A 3GCFA 3L71E 2IBZE 2NVFA 3GCEA 4QDDA 1VM9A 1O7HA 5AEWA 3VMIA 5CXMA 3GL0A 2JZAA 3EN1A 1SJGA 2DE7D 4HKVA 4OGQD 3C0DA 4QUPA 4NBAA 3EQQA 2FYUE
chains in the Genus database with same CATH superfamily
1SQVE 1ULJA 3H1KE 2D2CD 2QJKC 4NBBD 2HMLA 3GKEA 4PV1D 2HMMA 2BMRA 3GZXA 1NTKE 4PD4E 2HMOA 4NB8D 2Q3WA 1L0NE 2XR8A 4EMJB 2I7FA 1L0LE 1KB9E 3L75E 2HMKA 1WW9A 4H44D 2ZYLA 3CWBE 3GZYA 2DE5A 2QJYC 3VMID 2XSOA 2E75D 4HM6A 2YVJB 1Q90C 2E4PA 2B24A 4NBHA 1O7NA 4HM8A 4NBAD 1Z03A 1P84E 4NBED 1WQLA 1O7GA 1NDOA 3H1IE 3VMHA 2XRXA 4QDFB 2NWFA 3DQYA 1SQQE 5BOKA 1Z01A 3L73E 4HM5A 1PPJE 4QCKA 2GBXA 4NBCA 2YFLA 1PP9E 1NTZE 3CXHE 1O7WA 4HM2A 2A06E 3TGUE 4HM0A 2DE5D 2YFJA 1SQBE 2E4QA 3GTEA 4NBGA 3L70E 1UUWA 2B1XA 1NU1E 1RFSA 4QDFA 3GL2A 3VMGA 5AEUA 1FQTA 2GBWA 4HJLA 1EZVE 2E74D 5KKZC 2DE7A 4NBDA 4P1BH 4HM3A 4NB9A 2NVEA 4NBCD 1G8KB 2BMOA 1UUVA 4NBFA 4QURA 4QUQA 2QJPC 1JM1A 2DE6A 5HL4A 4AAYB 1NYKA 3D89A 1BE3E 2BCCE 1RIEA 3L74E 1ZRTE 5KLIC 3AZCA 3FOUA 1O7MA 1KYOE 4HM7A 4U3FE 4P1CH 4AIVA 1VCKA 3VCPA 1SQXE 1NTME 1BCCE 2NUKA 2HMJA 4H0LD 4NBGD 3CX5E 4HM4A 3VMGD 3BCCE 4HM1A 3L72E 2YFIA 3VCAA 2HMNA 3H1HE 4NBHD 2NUMA 2NVGA 4NBDD 1ULIA 1EG9A 3VMHD 1SQPE 4NBEA 2YIUC 3GOBA 4NB9D 3N0QA 4QDCA 4NBFD 2XSHA 2ZT9D 2DE6D 2E76D 4NBBA 3H1LE 4H13D 3H1JE 2BMQA 2CKFA 2FYNC 2JO6A 2QPZA 1Z02A 3GTSA 4NB8A 3GKQA 1G8JB 1O7PA 1VF5D 5KLVE 3GB4A 3GCFA 3L71E 2IBZE 2NVFA 3GCEA 4QDDA 1VM9A 1O7HA 5AEWA 3VMIA 5CXMA 3GL0A 2JZAA 3EN1A 1SJGA 2DE7D 4HKVA 4OGQD 3C0DA 4QUPA 4NBAA 3EQQA 2FYUE
chains in the Genus database with same CATH topology
1SQVE 1ULJA 3H1KE 2D2CD 2QJKC 4NBBD 2HMLA 3GKEA 4PV1D 2HMMA 2BMRA 3GZXA 1NTKE 4PD4E 2HMOA 4NB8D 2Q3WA 1L0NE 2XR8A 4EMJB 2I7FA 1L0LE 1KB9E 3L75E 2HMKA 1WW9A 4H44D 2ZYLA 3CWBE 3GZYA 2DE5A 2QJYC 3VMID 2XSOA 2E75D 4HM6A 2YVJB 1Q90C 2E4PA 2B24A 4NBHA 1O7NA 4HM8A 4NBAD 1Z03A 1P84E 4NBED 1WQLA 1O7GA 1NDOA 3H1IE 3VMHA 2XRXA 4QDFB 2NWFA 3DQYA 1SQQE 5BOKA 1Z01A 3L73E 4HM5A 1PPJE 4QCKA 2GBXA 4NBCA 2YFLA 1PP9E 1NTZE 3CXHE 1O7WA 4HM2A 2A06E 3TGUE 4HM0A 2DE5D 2YFJA 1SQBE 2E4QA 3GTEA 4NBGA 3L70E 1UUWA 2B1XA 1NU1E 1RFSA 4QDFA 3GL2A 3VMGA 5AEUA 1FQTA 2GBWA 4HJLA 1EZVE 2E74D 5KKZC 2DE7A 4NBDA 4P1BH 4HM3A 4NB9A 2NVEA 4NBCD 1G8KB 2BMOA 1UUVA 4NBFA 4QURA 4QUQA 2QJPC 1JM1A 2DE6A 5HL4A 4AAYB 1NYKA 3D89A 1BE3E 2BCCE 1RIEA 3L74E 1ZRTE 5KLIC 3AZCA 3FOUA 1O7MA 1KYOE 4HM7A 4U3FE 4P1CH 4AIVA 1VCKA 3VCPA 1SQXE 1NTME 1BCCE 2NUKA 2HMJA 4H0LD 4NBGD 3CX5E 4HM4A 3VMGD 3BCCE 4HM1A 3L72E 2YFIA 3VCAA 2HMNA 3H1HE 4NBHD 2NUMA 2NVGA 4NBDD 1ULIA 1EG9A 3VMHD 1SQPE 4NBEA 2YIUC 3GOBA 4NB9D 3N0QA 4QDCA 4NBFD 2XSHA 2ZT9D 2DE6D 2E76D 4NBBA 3H1LE 4H13D 3H1JE 2BMQA 2CKFA 2FYNC 2JO6A 2QPZA 1Z02A 3GTSA 4NB8A 3GKQA 1G8JB 1O7PA 1VF5D 5KLVE 3GB4A 3GCFA 3L71E 2IBZE 2NVFA 3GCEA 4QDDA 1VM9A 1O7HA 5AEWA 3VMIA 5CXMA 3GL0A 2JZAA 3EN1A 1SJGA 2DE7D 4HKVA 4OGQD 3C0DA 4QUPA 4NBAA 3EQQA 2FYUE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQV E;  1ULJ A;  3H1K E;  2D2C D;  2QJK C;  4NBB D;  2HML A;  3GKE A;  4PV1 D;  2HMM A;  2BMR A;  3GZX A;  1NTK E;  4PD4 E;  2HMO A;  4NB8 D;  2Q3W A;  1L0N E;  2XR8 A;  4EMJ B;  2I7F A;  1L0L E;  1KB9 E;  3L75 E;  2HMK A;  1WW9 A;  4H44 D;  2ZYL A;  3CWB E;  3GZY A;  2DE5 A;  2QJY C;  3VMI D;  2XSO A;  2E75 D;  4HM6 A;  2YVJ B;  1Q90 C;  2E4P A;  2B24 A;  4NBH A;  1O7N A;  4HM8 A;  4NBA D;  1Z03 A;  1P84 E;  4NBE D;  1WQL A;  1O7G A;  1NDO A;  3H1I E;  3VMH A;  2XRX A;  4QDF B;  2NWF A;  3DQY A;  1SQQ E;  5BOK A;  1Z01 A;  3L73 E;  4HM5 A;  1PPJ E;  4QCK A;  2GBX A;  4NBC A;  2YFL A;  1PP9 E;  1NTZ E;  3CXH E;  1O7W A;  4HM2 A;  2A06 E;  3TGU E;  4HM0 A;  2DE5 D;  2YFJ A;  1SQB E;  2E4Q A;  3GTE A;  4NBG A;  3L70 E;  1UUW A;  2B1X A;  1NU1 E;  1RFS A;  4QDF A;  3GL2 A;  3VMG A;  5AEU A;  1FQT A;  2GBW A;  4HJL A;  1EZV E;  2E74 D;  5KKZ C;  2DE7 A;  4NBD A;  4P1B H;  4HM3 A;  4NB9 A;  2NVE A;  4NBC D;  1G8K B;  2BMO A;  1UUV A;  4NBF A;  4QUR A;  4QUQ A;  2QJP C;  1JM1 A;  2DE6 A;  5HL4 A;  4AAY B;  1NYK A;  3D89 A;  1BE3 E;  2BCC E;  1RIE A;  3L74 E;  1ZRT E;  5KLI C;  3AZC A;  3FOU A;  1O7M A;  1KYO E;  4HM7 A;  4U3F E;  4P1C H;  4AIV A;  1VCK A;  3VCP A;  1SQX E;  1NTM E;  1BCC E;  2NUK A;  2HMJ A;  4H0L D;  4NBG D;  3CX5 E;  4HM4 A;  3VMG D;  3BCC E;  4HM1 A;  3L72 E;  2YFI A;  3VCA A;  2HMN A;  3H1H E;  4NBH D;  2NUM A;  2NVG A;  4NBD D;  1ULI A;  1EG9 A;  3VMH D;  1SQP E;  4NBE A;  2YIU C;  3GOB A;  4NB9 D;  3N0Q A;  4QDC A;  4NBF D;  2XSH A;  2ZT9 D;  2DE6 D;  2E76 D;  4NBB A;  3H1L E;  4H13 D;  3H1J E;  2BMQ A;  2CKF A;  2FYN C;  2JO6 A;  2QPZ A;  1Z02 A;  3GTS A;  4NB8 A;  3GKQ A;  1G8J B;  1O7P A;  1VF5 D;  5KLV E;  3GB4 A;  3GCF A;  3L71 E;  2IBZ E;  2NVF A;  3GCE A;  4QDD A;  1VM9 A;  1O7H A;  5AEW A;  3VMI A;  5CXM A;  3GL0 A;  2JZA A;  3EN1 A;  1SJG A;  2DE7 D;  4HKV A;  4OGQ D;  3C0D A;  4QUP A;  4NBA A;  3EQQ A;  2FYU E; 
#chains in the Genus database with same CATH topology
 1SQV E;  1ULJ A;  3H1K E;  2D2C D;  2QJK C;  4NBB D;  2HML A;  3GKE A;  4PV1 D;  2HMM A;  2BMR A;  3GZX A;  1NTK E;  4PD4 E;  2HMO A;  4NB8 D;  2Q3W A;  1L0N E;  2XR8 A;  4EMJ B;  2I7F A;  1L0L E;  1KB9 E;  3L75 E;  2HMK A;  1WW9 A;  4H44 D;  2ZYL A;  3CWB E;  3GZY A;  2DE5 A;  2QJY C;  3VMI D;  2XSO A;  2E75 D;  4HM6 A;  2YVJ B;  1Q90 C;  2E4P A;  2B24 A;  4NBH A;  1O7N A;  4HM8 A;  4NBA D;  1Z03 A;  1P84 E;  4NBE D;  1WQL A;  1O7G A;  1NDO A;  3H1I E;  3VMH A;  2XRX A;  4QDF B;  2NWF A;  3DQY A;  1SQQ E;  5BOK A;  1Z01 A;  3L73 E;  4HM5 A;  1PPJ E;  4QCK A;  2GBX A;  4NBC A;  2YFL A;  1PP9 E;  1NTZ E;  3CXH E;  1O7W A;  4HM2 A;  2A06 E;  3TGU E;  4HM0 A;  2DE5 D;  2YFJ A;  1SQB E;  2E4Q A;  3GTE A;  4NBG A;  3L70 E;  1UUW A;  2B1X A;  1NU1 E;  1RFS A;  4QDF A;  3GL2 A;  3VMG A;  5AEU A;  1FQT A;  2GBW A;  4HJL A;  1EZV E;  2E74 D;  5KKZ C;  2DE7 A;  4NBD A;  4P1B H;  4HM3 A;  4NB9 A;  2NVE A;  4NBC D;  1G8K B;  2BMO A;  1UUV A;  4NBF A;  4QUR A;  4QUQ A;  2QJP C;  1JM1 A;  2DE6 A;  5HL4 A;  4AAY B;  1NYK A;  3D89 A;  1BE3 E;  2BCC E;  1RIE A;  3L74 E;  1ZRT E;  5KLI C;  3AZC A;  3FOU A;  1O7M A;  1KYO E;  4HM7 A;  4U3F E;  4P1C H;  4AIV A;  1VCK A;  3VCP A;  1SQX E;  1NTM E;  1BCC E;  2NUK A;  2HMJ A;  4H0L D;  4NBG D;  3CX5 E;  4HM4 A;  3VMG D;  3BCC E;  4HM1 A;  3L72 E;  2YFI A;  3VCA A;  2HMN A;  3H1H E;  4NBH D;  2NUM A;  2NVG A;  4NBD D;  1ULI A;  1EG9 A;  3VMH D;  1SQP E;  4NBE A;  2YIU C;  3GOB A;  4NB9 D;  3N0Q A;  4QDC A;  4NBF D;  2XSH A;  2ZT9 D;  2DE6 D;  2E76 D;  4NBB A;  3H1L E;  4H13 D;  3H1J E;  2BMQ A;  2CKF A;  2FYN C;  2JO6 A;  2QPZ A;  1Z02 A;  3GTS A;  4NB8 A;  3GKQ A;  1G8J B;  1O7P A;  1VF5 D;  5KLV E;  3GB4 A;  3GCF A;  3L71 E;  2IBZ E;  2NVF A;  3GCE A;  4QDD A;  1VM9 A;  1O7H A;  5AEW A;  3VMI A;  5CXM A;  3GL0 A;  2JZA A;  3EN1 A;  1SJG A;  2DE7 D;  4HKV A;  4OGQ D;  3C0D A;  4QUP A;  4NBA A;  3EQQ A;  2FYU E; 
#chains in the Genus database with same CATH homology
 1SQV E;  1ULJ A;  3H1K E;  2D2C D;  2QJK C;  4NBB D;  2HML A;  3GKE A;  4PV1 D;  2HMM A;  2BMR A;  3GZX A;  1NTK E;  4PD4 E;  2HMO A;  4NB8 D;  2Q3W A;  1L0N E;  2XR8 A;  4EMJ B;  2I7F A;  1L0L E;  1KB9 E;  3L75 E;  2HMK A;  1WW9 A;  4H44 D;  2ZYL A;  3CWB E;  3GZY A;  2DE5 A;  2QJY C;  3VMI D;  2XSO A;  2E75 D;  4HM6 A;  2YVJ B;  1Q90 C;  2E4P A;  2B24 A;  4NBH A;  1O7N A;  4HM8 A;  4NBA D;  1Z03 A;  1P84 E;  4NBE D;  1WQL A;  1O7G A;  1NDO A;  3H1I E;  3VMH A;  2XRX A;  4QDF B;  2NWF A;  3DQY A;  1SQQ E;  5BOK A;  1Z01 A;  3L73 E;  4HM5 A;  1PPJ E;  4QCK A;  2GBX A;  4NBC A;  2YFL A;  1PP9 E;  1NTZ E;  3CXH E;  1O7W A;  4HM2 A;  2A06 E;  3TGU E;  4HM0 A;  2DE5 D;  2YFJ A;  1SQB E;  2E4Q A;  3GTE A;  4NBG A;  3L70 E;  1UUW A;  2B1X A;  1NU1 E;  1RFS A;  4QDF A;  3GL2 A;  3VMG A;  5AEU A;  1FQT A;  2GBW A;  4HJL A;  1EZV E;  2E74 D;  5KKZ C;  2DE7 A;  4NBD A;  4P1B H;  4HM3 A;  4NB9 A;  2NVE A;  4NBC D;  1G8K B;  2BMO A;  1UUV A;  4NBF A;  4QUR A;  4QUQ A;  2QJP C;  1JM1 A;  2DE6 A;  5HL4 A;  4AAY B;  1NYK A;  3D89 A;  1BE3 E;  2BCC E;  1RIE A;  3L74 E;  1ZRT E;  5KLI C;  3AZC A;  3FOU A;  1O7M A;  1KYO E;  4HM7 A;  4U3F E;  4P1C H;  4AIV A;  1VCK A;  3VCP A;  1SQX E;  1NTM E;  1BCC E;  2NUK A;  2HMJ A;  4H0L D;  4NBG D;  3CX5 E;  4HM4 A;  3VMG D;  3BCC E;  4HM1 A;  3L72 E;  2YFI A;  3VCA A;  2HMN A;  3H1H E;  4NBH D;  2NUM A;  2NVG A;  4NBD D;  1ULI A;  1EG9 A;  3VMH D;  1SQP E;  4NBE A;  2YIU C;  3GOB A;  4NB9 D;  3N0Q A;  4QDC A;  4NBF D;  2XSH A;  2ZT9 D;  2DE6 D;  2E76 D;  4NBB A;  3H1L E;  4H13 D;  3H1J E;  2BMQ A;  2CKF A;  2FYN C;  2JO6 A;  2QPZ A;  1Z02 A;  3GTS A;  4NB8 A;  3GKQ A;  1G8J B;  1O7P A;  1VF5 D;  5KLV E;  3GB4 A;  3GCF A;  3L71 E;  2IBZ E;  2NVF A;  3GCE A;  4QDD A;  1VM9 A;  1O7H A;  5AEW A;  3VMI A;  5CXM A;  3GL0 A;  2JZA A;  3EN1 A;  1SJG A;  2DE7 D;  4HKV A;  4OGQ D;  3C0D A;  4QUP A;  4NBA A;  3EQQ A;  2FYU E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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