2B1XA

Crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
441
structure length
441
Chain Sequence
MLSNELRQTLQKGLHDVNSDWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELGLAPPDPQFALYGEHIHTGHGHGLGIIGPPPGMPLPEFMGLPENIVEELERRLTPEQVEIFRPTAFIHGTVFPNLSIGNFLMGKDHLSAPTAFLTLRLWHPLGPDKMEVMSFFLVEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMGGQFAKTGELNYQMGRGVLEPDPNWTGPGEAYPLDYAEANQRNFLEYWMQLMLAESPL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Increased Thermostability of Rhodococcus sp. Naphthalene 1,2-Dioxygenase.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords naphthalene dioxygenase large subunit
total genus 146
structure length 441
sequence length 441
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2005-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2b1xA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2b1xA01
4NBHA 1SQVE 4QUQA 4NBFA 2XSOA 4NB9D 3L72E 2FYNC 2NWFA 4OGQD 1ULJA 3GKQA 3VMID 5BOKA 4EMJB 4NBGA 3GZXA 2FYUE 3VMHD 4QCKA 3L75E 4HM6A 2YIUC 3FOUA 4AAYB 4NB9A 2NVGA 2B24A 1SQBE 1O7WA 1Z03A 5AEWA 3VMIA 2BMQA 3GCEA 1SQXE 3VMHA 2JO6A 4NBDD 3L71E 3C0DA 1PP9E 5KLVE 1WQLA 1SJGA 1WW9A 3GB4A 1O7GA 4QURA 3AZCA 3EN1A 1NYKA 2GBWA 2BMOA 4QUPA 2NUMA 1RFSA 2NUKA 1ULIA 2ZT9D 1NU1E 1Z01A 1SQQE 3GL0A 2BCCE 1NTZE 4NBBD 2XRXA 2YFJA 3GZYA 1EG9A 4HM3A 4NBED 2XSHA 2QJPC 3D89A 1EZVE 1RIEA 2DE6D 1G8KB 1SQPE 2D2CD 4NBBA 1BCCE 2I7FA 3CWBE 2HMOA 3DQYA 3H1JE 3GTSA 3H1IE 1ZRTE 4QDFB 4NBEA 3BCCE 1VM9A 2CKFA 1P84E 2YVJB 1KYOE 2QJKC 4HKVA 1Z02A 4U3FE 5AEUA 4P1BH 5HL4A 4QDDA 4NBDA 2HMLA 1L0NE 2B1XA 4PV1D 4NBCD 2NVEA 3H1HE 4P1CH 3GKEA 2E75D 4HM7A 1L0LE 2HMKA 2Q3WA 2YFIA 1G8JB 1Q90C 3GTEA 3GOBA 2BMRA 4NB8D 2NVFA 2E4PA 4NBCA 2E76D 1UUVA 1VF5D 3L70E 3H1KE 3N0QA 4QDFA 4NBFD 2XR8A 1O7MA 1O7PA 3GCFA 1JM1A 1VCKA 3CXHE 4NB8A 3H1LE 2QJYC 3CX5E 2JZAA 2DE5D 4H44D 2DE6A 2A06E 2GBXA 4HM4A 1O7NA 5KKZC 1FQTA 1NDOA 3VMGD 5KLIC 4QDCA 4HM1A 4HM0A 2QPZA 1BE3E 3VCPA 2DE5A 2IBZE 4HM8A 1KB9E 4NBAD 1NTME 2HMMA 2HMNA 4H0LD 4H13D 2YFLA 4AIVA 2DE7D 4HJLA 3VMGA 2ZYLA 3TGUE 1NTKE 1PPJE 3L74E 4NBHD 2E4QA 4HM5A 4PD4E 4NBAA 3EQQA 1UUWA 2HMJA 1O7HA 3GL2A 3L73E 2DE7A 3VCAA 2E74D 5CXMA 4NBGD 4HM2A
chains in the Genus database with same CATH superfamily
4NBHA 1SQVE 4QUQA 4NBFA 2XSOA 4NB9D 3L72E 2FYNC 2NWFA 4OGQD 1ULJA 3GKQA 3VMID 5BOKA 4EMJB 4NBGA 3GZXA 2FYUE 3VMHD 4QCKA 3L75E 4HM6A 2YIUC 3FOUA 4AAYB 4NB9A 2NVGA 2B24A 1SQBE 1O7WA 1Z03A 5AEWA 3VMIA 2BMQA 3GCEA 1SQXE 3VMHA 2JO6A 4NBDD 3L71E 3C0DA 1PP9E 5KLVE 1WQLA 1SJGA 1WW9A 3GB4A 1O7GA 4QURA 3AZCA 3EN1A 1NYKA 2GBWA 2BMOA 4QUPA 2NUMA 1RFSA 2NUKA 1ULIA 2ZT9D 1NU1E 1Z01A 1SQQE 3GL0A 2BCCE 1NTZE 4NBBD 2XRXA 2YFJA 3GZYA 1EG9A 4HM3A 4NBED 2XSHA 2QJPC 3D89A 1EZVE 1RIEA 2DE6D 1G8KB 1SQPE 2D2CD 4NBBA 1BCCE 2I7FA 3CWBE 2HMOA 3DQYA 3H1JE 3GTSA 3H1IE 1ZRTE 4QDFB 4NBEA 3BCCE 1VM9A 2CKFA 1P84E 2YVJB 1KYOE 2QJKC 4HKVA 1Z02A 4U3FE 5AEUA 4P1BH 5HL4A 4QDDA 4NBDA 2HMLA 1L0NE 2B1XA 4PV1D 4NBCD 2NVEA 3H1HE 4P1CH 3GKEA 2E75D 4HM7A 1L0LE 2HMKA 2Q3WA 2YFIA 1G8JB 1Q90C 3GTEA 3GOBA 2BMRA 4NB8D 2NVFA 2E4PA 4NBCA 2E76D 1UUVA 1VF5D 3L70E 3H1KE 3N0QA 4QDFA 4NBFD 2XR8A 1O7MA 1O7PA 3GCFA 1JM1A 1VCKA 3CXHE 4NB8A 3H1LE 2QJYC 3CX5E 2JZAA 2DE5D 4H44D 2DE6A 2A06E 2GBXA 4HM4A 1O7NA 5KKZC 1FQTA 1NDOA 3VMGD 5KLIC 4QDCA 4HM1A 4HM0A 2QPZA 1BE3E 3VCPA 2DE5A 2IBZE 4HM8A 1KB9E 4NBAD 1NTME 2HMMA 2HMNA 4H0LD 4H13D 2YFLA 4AIVA 2DE7D 4HJLA 3VMGA 2ZYLA 3TGUE 1NTKE 1PPJE 3L74E 4NBHD 2E4QA 4HM5A 4PD4E 4NBAA 3EQQA 1UUWA 2HMJA 1O7HA 3GL2A 3L73E 2DE7A 3VCAA 2E74D 5CXMA 4NBGD 4HM2A
chains in the Genus database with same CATH topology
4NBHA 1SQVE 4QUQA 4NBFA 2XSOA 4NB9D 3L72E 2FYNC 2NWFA 4OGQD 1ULJA 3GKQA 3VMID 5BOKA 4EMJB 4NBGA 3GZXA 2FYUE 3VMHD 4QCKA 3L75E 4HM6A 2YIUC 3FOUA 4AAYB 4NB9A 2NVGA 2B24A 1SQBE 1O7WA 1Z03A 5AEWA 3VMIA 2BMQA 3GCEA 1SQXE 3VMHA 2JO6A 4NBDD 3L71E 3C0DA 1PP9E 5KLVE 1WQLA 1SJGA 1WW9A 3GB4A 1O7GA 4QURA 3AZCA 3EN1A 1NYKA 2GBWA 2BMOA 4QUPA 2NUMA 1RFSA 2NUKA 1ULIA 2ZT9D 1NU1E 1Z01A 1SQQE 3GL0A 2BCCE 1NTZE 4NBBD 2XRXA 2YFJA 3GZYA 1EG9A 4HM3A 4NBED 2XSHA 2QJPC 3D89A 1EZVE 1RIEA 2DE6D 1G8KB 1SQPE 2D2CD 4NBBA 1BCCE 2I7FA 3CWBE 2HMOA 3DQYA 3H1JE 3GTSA 3H1IE 1ZRTE 4QDFB 4NBEA 3BCCE 1VM9A 2CKFA 1P84E 2YVJB 1KYOE 2QJKC 4HKVA 1Z02A 4U3FE 5AEUA 4P1BH 5HL4A 4QDDA 4NBDA 2HMLA 1L0NE 2B1XA 4PV1D 4NBCD 2NVEA 3H1HE 4P1CH 3GKEA 2E75D 4HM7A 1L0LE 2HMKA 2Q3WA 2YFIA 1G8JB 1Q90C 3GTEA 3GOBA 2BMRA 4NB8D 2NVFA 2E4PA 4NBCA 2E76D 1UUVA 1VF5D 3L70E 3H1KE 3N0QA 4QDFA 4NBFD 2XR8A 1O7MA 1O7PA 3GCFA 1JM1A 1VCKA 3CXHE 4NB8A 3H1LE 2QJYC 3CX5E 2JZAA 2DE5D 4H44D 2DE6A 2A06E 2GBXA 4HM4A 1O7NA 5KKZC 1FQTA 1NDOA 3VMGD 5KLIC 4QDCA 4HM1A 4HM0A 2QPZA 1BE3E 3VCPA 2DE5A 2IBZE 4HM8A 1KB9E 4NBAD 1NTME 2HMMA 2HMNA 4H0LD 4H13D 2YFLA 4AIVA 2DE7D 4HJLA 3VMGA 2ZYLA 3TGUE 1NTKE 1PPJE 3L74E 4NBHD 2E4QA 4HM5A 4PD4E 4NBAA 3EQQA 1UUWA 2HMJA 1O7HA 3GL2A 3L73E 2DE7A 3VCAA 2E74D 5CXMA 4NBGD 4HM2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NBH A;  1SQV E;  4QUQ A;  4NBF A;  2XSO A;  4NB9 D;  3L72 E;  2FYN C;  2NWF A;  4OGQ D;  1ULJ A;  3GKQ A;  3VMI D;  5BOK A;  4EMJ B;  4NBG A;  3GZX A;  2FYU E;  3VMH D;  4QCK A;  3L75 E;  4HM6 A;  2YIU C;  3FOU A;  4AAY B;  4NB9 A;  2NVG A;  2B24 A;  1SQB E;  1O7W A;  1Z03 A;  5AEW A;  3VMI A;  2BMQ A;  3GCE A;  1SQX E;  3VMH A;  2JO6 A;  4NBD D;  3L71 E;  3C0D A;  1PP9 E;  5KLV E;  1WQL A;  1SJG A;  1WW9 A;  3GB4 A;  1O7G A;  4QUR A;  3AZC A;  3EN1 A;  1NYK A;  2GBW A;  2BMO A;  4QUP A;  2NUM A;  1RFS A;  2NUK A;  1ULI A;  2ZT9 D;  1NU1 E;  1Z01 A;  1SQQ E;  3GL0 A;  2BCC E;  1NTZ E;  4NBB D;  2XRX A;  2YFJ A;  3GZY A;  1EG9 A;  4HM3 A;  4NBE D;  2XSH A;  2QJP C;  3D89 A;  1EZV E;  1RIE A;  2DE6 D;  1G8K B;  1SQP E;  2D2C D;  4NBB A;  1BCC E;  2I7F A;  3CWB E;  2HMO A;  3DQY A;  3H1J E;  3GTS A;  3H1I E;  1ZRT E;  4QDF B;  4NBE A;  3BCC E;  1VM9 A;  2CKF A;  1P84 E;  2YVJ B;  1KYO E;  2QJK C;  4HKV A;  1Z02 A;  4U3F E;  5AEU A;  4P1B H;  5HL4 A;  4QDD A;  4NBD A;  2HML A;  1L0N E;  2B1X A;  4PV1 D;  4NBC D;  2NVE A;  3H1H E;  4P1C H;  3GKE A;  2E75 D;  4HM7 A;  1L0L E;  2HMK A;  2Q3W A;  2YFI A;  1G8J B;  1Q90 C;  3GTE A;  3GOB A;  2BMR A;  4NB8 D;  2NVF A;  2E4P A;  4NBC A;  2E76 D;  1UUV A;  1VF5 D;  3L70 E;  3H1K E;  3N0Q A;  4QDF A;  4NBF D;  2XR8 A;  1O7M A;  1O7P A;  3GCF A;  1JM1 A;  1VCK A;  3CXH E;  4NB8 A;  3H1L E;  2QJY C;  3CX5 E;  2JZA A;  2DE5 D;  4H44 D;  2DE6 A;  2A06 E;  2GBX A;  4HM4 A;  1O7N A;  5KKZ C;  1FQT A;  1NDO A;  3VMG D;  5KLI C;  4QDC A;  4HM1 A;  4HM0 A;  2QPZ A;  1BE3 E;  3VCP A;  2DE5 A;  2IBZ E;  4HM8 A;  1KB9 E;  4NBA D;  1NTM E;  2HMM A;  2HMN A;  4H0L D;  4H13 D;  2YFL A;  4AIV A;  2DE7 D;  4HJL A;  3VMG A;  2ZYL A;  3TGU E;  1NTK E;  1PPJ E;  3L74 E;  4NBH D;  2E4Q A;  4HM5 A;  4PD4 E;  4NBA A;  3EQQ A;  1UUW A;  2HMJ A;  1O7H A;  3GL2 A;  3L73 E;  2DE7 A;  3VCA A;  2E74 D;  5CXM A;  4NBG D;  4HM2 A; 
#chains in the Genus database with same CATH topology
 4NBH A;  1SQV E;  4QUQ A;  4NBF A;  2XSO A;  4NB9 D;  3L72 E;  2FYN C;  2NWF A;  4OGQ D;  1ULJ A;  3GKQ A;  3VMI D;  5BOK A;  4EMJ B;  4NBG A;  3GZX A;  2FYU E;  3VMH D;  4QCK A;  3L75 E;  4HM6 A;  2YIU C;  3FOU A;  4AAY B;  4NB9 A;  2NVG A;  2B24 A;  1SQB E;  1O7W A;  1Z03 A;  5AEW A;  3VMI A;  2BMQ A;  3GCE A;  1SQX E;  3VMH A;  2JO6 A;  4NBD D;  3L71 E;  3C0D A;  1PP9 E;  5KLV E;  1WQL A;  1SJG A;  1WW9 A;  3GB4 A;  1O7G A;  4QUR A;  3AZC A;  3EN1 A;  1NYK A;  2GBW A;  2BMO A;  4QUP A;  2NUM A;  1RFS A;  2NUK A;  1ULI A;  2ZT9 D;  1NU1 E;  1Z01 A;  1SQQ E;  3GL0 A;  2BCC E;  1NTZ E;  4NBB D;  2XRX A;  2YFJ A;  3GZY A;  1EG9 A;  4HM3 A;  4NBE D;  2XSH A;  2QJP C;  3D89 A;  1EZV E;  1RIE A;  2DE6 D;  1G8K B;  1SQP E;  2D2C D;  4NBB A;  1BCC E;  2I7F A;  3CWB E;  2HMO A;  3DQY A;  3H1J E;  3GTS A;  3H1I E;  1ZRT E;  4QDF B;  4NBE A;  3BCC E;  1VM9 A;  2CKF A;  1P84 E;  2YVJ B;  1KYO E;  2QJK C;  4HKV A;  1Z02 A;  4U3F E;  5AEU A;  4P1B H;  5HL4 A;  4QDD A;  4NBD A;  2HML A;  1L0N E;  2B1X A;  4PV1 D;  4NBC D;  2NVE A;  3H1H E;  4P1C H;  3GKE A;  2E75 D;  4HM7 A;  1L0L E;  2HMK A;  2Q3W A;  2YFI A;  1G8J B;  1Q90 C;  3GTE A;  3GOB A;  2BMR A;  4NB8 D;  2NVF A;  2E4P A;  4NBC A;  2E76 D;  1UUV A;  1VF5 D;  3L70 E;  3H1K E;  3N0Q A;  4QDF A;  4NBF D;  2XR8 A;  1O7M A;  1O7P A;  3GCF A;  1JM1 A;  1VCK A;  3CXH E;  4NB8 A;  3H1L E;  2QJY C;  3CX5 E;  2JZA A;  2DE5 D;  4H44 D;  2DE6 A;  2A06 E;  2GBX A;  4HM4 A;  1O7N A;  5KKZ C;  1FQT A;  1NDO A;  3VMG D;  5KLI C;  4QDC A;  4HM1 A;  4HM0 A;  2QPZ A;  1BE3 E;  3VCP A;  2DE5 A;  2IBZ E;  4HM8 A;  1KB9 E;  4NBA D;  1NTM E;  2HMM A;  2HMN A;  4H0L D;  4H13 D;  2YFL A;  4AIV A;  2DE7 D;  4HJL A;  3VMG A;  2ZYL A;  3TGU E;  1NTK E;  1PPJ E;  3L74 E;  4NBH D;  2E4Q A;  4HM5 A;  4PD4 E;  4NBA A;  3EQQ A;  1UUW A;  2HMJ A;  1O7H A;  3GL2 A;  3L73 E;  2DE7 A;  3VCA A;  2E74 D;  5CXM A;  4NBG D;  4HM2 A; 
#chains in the Genus database with same CATH homology
 4NBH A;  1SQV E;  4QUQ A;  4NBF A;  2XSO A;  4NB9 D;  3L72 E;  2FYN C;  2NWF A;  4OGQ D;  1ULJ A;  3GKQ A;  3VMI D;  5BOK A;  4EMJ B;  4NBG A;  3GZX A;  2FYU E;  3VMH D;  4QCK A;  3L75 E;  4HM6 A;  2YIU C;  3FOU A;  4AAY B;  4NB9 A;  2NVG A;  2B24 A;  1SQB E;  1O7W A;  1Z03 A;  5AEW A;  3VMI A;  2BMQ A;  3GCE A;  1SQX E;  3VMH A;  2JO6 A;  4NBD D;  3L71 E;  3C0D A;  1PP9 E;  5KLV E;  1WQL A;  1SJG A;  1WW9 A;  3GB4 A;  1O7G A;  4QUR A;  3AZC A;  3EN1 A;  1NYK A;  2GBW A;  2BMO A;  4QUP A;  2NUM A;  1RFS A;  2NUK A;  1ULI A;  2ZT9 D;  1NU1 E;  1Z01 A;  1SQQ E;  3GL0 A;  2BCC E;  1NTZ E;  4NBB D;  2XRX A;  2YFJ A;  3GZY A;  1EG9 A;  4HM3 A;  4NBE D;  2XSH A;  2QJP C;  3D89 A;  1EZV E;  1RIE A;  2DE6 D;  1G8K B;  1SQP E;  2D2C D;  4NBB A;  1BCC E;  2I7F A;  3CWB E;  2HMO A;  3DQY A;  3H1J E;  3GTS A;  3H1I E;  1ZRT E;  4QDF B;  4NBE A;  3BCC E;  1VM9 A;  2CKF A;  1P84 E;  2YVJ B;  1KYO E;  2QJK C;  4HKV A;  1Z02 A;  4U3F E;  5AEU A;  4P1B H;  5HL4 A;  4QDD A;  4NBD A;  2HML A;  1L0N E;  2B1X A;  4PV1 D;  4NBC D;  2NVE A;  3H1H E;  4P1C H;  3GKE A;  2E75 D;  4HM7 A;  1L0L E;  2HMK A;  2Q3W A;  2YFI A;  1G8J B;  1Q90 C;  3GTE A;  3GOB A;  2BMR A;  4NB8 D;  2NVF A;  2E4P A;  4NBC A;  2E76 D;  1UUV A;  1VF5 D;  3L70 E;  3H1K E;  3N0Q A;  4QDF A;  4NBF D;  2XR8 A;  1O7M A;  1O7P A;  3GCF A;  1JM1 A;  1VCK A;  3CXH E;  4NB8 A;  3H1L E;  2QJY C;  3CX5 E;  2JZA A;  2DE5 D;  4H44 D;  2DE6 A;  2A06 E;  2GBX A;  4HM4 A;  1O7N A;  5KKZ C;  1FQT A;  1NDO A;  3VMG D;  5KLI C;  4QDC A;  4HM1 A;  4HM0 A;  2QPZ A;  1BE3 E;  3VCP A;  2DE5 A;  2IBZ E;  4HM8 A;  1KB9 E;  4NBA D;  1NTM E;  2HMM A;  2HMN A;  4H0L D;  4H13 D;  2YFL A;  4AIV A;  2DE7 D;  4HJL A;  3VMG A;  2ZYL A;  3TGU E;  1NTK E;  1PPJ E;  3L74 E;  4NBH D;  2E4Q A;  4HM5 A;  4PD4 E;  4NBA A;  3EQQ A;  1UUW A;  2HMJ A;  1O7H A;  3GL2 A;  3L73 E;  2DE7 A;  3VCA A;  2E74 D;  5CXM A;  4NBG D;  4HM2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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