2B24A

Crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp. bound to indole
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
440
structure length
440
Chain Sequence
MLSNELRQTLQKGLHDVNSDWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELGLAPPDPQFALYGEHIHTGHGHGLGIIGPPPGMPLPEFMGLPENIVEELERRLTPEQVEIFRPTAFIHGTVFPNLSIGNFLMGKDHLSAPTAFLTLRLWHPLGPDKMEVMSFFLVEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMGGQFAKTGELNYQMGRGVLEPDPNWTGPGEAYPLDYAEANQRNFLEYWMQLMLAESP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Increased Thermostability of Rhodococcus sp. Naphthalene 1,2-Dioxygenase.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords naphthalene dioxygenase large subunit
total genus 130
structure length 440
sequence length 440
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2005-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2b24A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2b24A01
2QJKC 2NUKA 4NBGD 2JO6A 3VCPA 3L75E 1G8JB 2BMOA 1BE3E 2BMRA 5KLIC 1VM9A 2HMOA 4NBCA 4EMJB 1EG9A 1VCKA 1WQLA 4HJLA 3GKQA 3GTSA 4NB8D 2B1XA 2HMNA 3GKEA 4H44D 5HL4A 1L0LE 2DE6D 1SQVE 4NB8A 3H1KE 4HM8A 2YVJB 3L74E 4HKVA 2GBWA 1WW9A 1O7NA 2D2CD 4NBCD 4QUPA 1O7MA 1RIEA 1SQQE 4HM2A 3TGUE 1NYKA 3D89A 2XSHA 3H1HE 4QDFA 1SJGA 4HM5A 5KLVE 3CXHE 1NTKE 2E4QA 3GZXA 2E74D 2CKFA 4NBAD 3EQQA 3GOBA 3GL2A 4NBDD 4NBBD 4NBFA 4NBDA 2NUMA 2E76D 1NDOA 2E75D 2YFIA 1UUVA 4QDDA 4HM0A 4HM3A 3GCFA 4NBAA 3GB4A 1O7HA 1L0NE 2E4PA 4H0LD 4NBHD 1PPJE 1NTME 1NTZE 3CX5E 4QCKA 1SQBE 3VMHA 3BCCE 4NBGA 2XR8A 1JM1A 2YFJA 2YIUC 1VF5D 1ZRTE 2NWFA 2QJPC 2NVFA 2YFLA 4HM4A 1KB9E 1SQXE 4HM7A 1G8KB 1PP9E 3VMID 4NB9A 2NVEA 3VMGA 3L72E 2QJYC 4OGQD 2XSOA 3H1LE 1Z02A 3VCAA 2HMMA 4NBFD 1O7WA 2HMKA 3GCEA 4P1BH 4QDCA 1RFSA 2FYUE 3C0DA 1ULJA 2NVGA 2A06E 4U3FE 4NBED 2DE7D 1Z01A 3N0QA 1Q90C 2ZT9D 3VMHD 3VMGD 3FOUA 1BCCE 4P1CH 2B24A 3AZCA 4NB9D 3L73E 3GL0A 4NBEA 4AIVA 3CWBE 3DQYA 2HMJA 4PD4E 3GTEA 1SQPE 3EN1A 2Q3WA 1EZVE 3H1IE 3GZYA 2HMLA 4PV1D 1Z03A 5KKZC 2XRXA 1UUWA 2ZYLA 1P84E 2FYNC 2GBXA 2QPZA 4QURA 2DE5D 3L71E 2JZAA 4NBHA 2DE7A 2I7FA 4H13D 4QUQA 4AAYB 4HM1A 2BCCE 2DE6A 1KYOE 3VMIA 1NU1E 5AEUA 5CXMA 1FQTA 2IBZE 2BMQA 5BOKA 2DE5A 1O7GA 1ULIA 4NBBA 3L70E 5AEWA 1O7PA 4HM6A 3H1JE 4QDFB
chains in the Genus database with same CATH superfamily
2QJKC 2NUKA 4NBGD 2JO6A 3VCPA 3L75E 1G8JB 2BMOA 1BE3E 2BMRA 5KLIC 1VM9A 2HMOA 4NBCA 4EMJB 1EG9A 1VCKA 1WQLA 4HJLA 3GKQA 3GTSA 4NB8D 2B1XA 2HMNA 3GKEA 4H44D 5HL4A 1L0LE 2DE6D 1SQVE 4NB8A 3H1KE 4HM8A 2YVJB 3L74E 4HKVA 2GBWA 1WW9A 1O7NA 2D2CD 4NBCD 4QUPA 1O7MA 1RIEA 1SQQE 4HM2A 3TGUE 1NYKA 3D89A 2XSHA 3H1HE 4QDFA 1SJGA 4HM5A 5KLVE 3CXHE 1NTKE 2E4QA 3GZXA 2E74D 2CKFA 4NBAD 3EQQA 3GOBA 3GL2A 4NBDD 4NBBD 4NBFA 4NBDA 2NUMA 2E76D 1NDOA 2E75D 2YFIA 1UUVA 4QDDA 4HM0A 4HM3A 3GCFA 4NBAA 3GB4A 1O7HA 1L0NE 2E4PA 4H0LD 4NBHD 1PPJE 1NTME 1NTZE 3CX5E 4QCKA 1SQBE 3VMHA 3BCCE 4NBGA 2XR8A 1JM1A 2YFJA 2YIUC 1VF5D 1ZRTE 2NWFA 2QJPC 2NVFA 2YFLA 4HM4A 1KB9E 1SQXE 4HM7A 1G8KB 1PP9E 3VMID 4NB9A 2NVEA 3VMGA 3L72E 2QJYC 4OGQD 2XSOA 3H1LE 1Z02A 3VCAA 2HMMA 4NBFD 1O7WA 2HMKA 3GCEA 4P1BH 4QDCA 1RFSA 2FYUE 3C0DA 1ULJA 2NVGA 2A06E 4U3FE 4NBED 2DE7D 1Z01A 3N0QA 1Q90C 2ZT9D 3VMHD 3VMGD 3FOUA 1BCCE 4P1CH 2B24A 3AZCA 4NB9D 3L73E 3GL0A 4NBEA 4AIVA 3CWBE 3DQYA 2HMJA 4PD4E 3GTEA 1SQPE 3EN1A 2Q3WA 1EZVE 3H1IE 3GZYA 2HMLA 4PV1D 1Z03A 5KKZC 2XRXA 1UUWA 2ZYLA 1P84E 2FYNC 2GBXA 2QPZA 4QURA 2DE5D 3L71E 2JZAA 4NBHA 2DE7A 2I7FA 4H13D 4QUQA 4AAYB 4HM1A 2BCCE 2DE6A 1KYOE 3VMIA 1NU1E 5AEUA 5CXMA 1FQTA 2IBZE 2BMQA 5BOKA 2DE5A 1O7GA 1ULIA 4NBBA 3L70E 5AEWA 1O7PA 4HM6A 3H1JE 4QDFB
chains in the Genus database with same CATH topology
2QJKC 2NUKA 4NBGD 2JO6A 3VCPA 3L75E 1G8JB 2BMOA 1BE3E 2BMRA 5KLIC 1VM9A 2HMOA 4NBCA 4EMJB 1EG9A 1VCKA 1WQLA 4HJLA 3GKQA 3GTSA 4NB8D 2B1XA 2HMNA 3GKEA 4H44D 5HL4A 1L0LE 2DE6D 1SQVE 4NB8A 3H1KE 4HM8A 2YVJB 3L74E 4HKVA 2GBWA 1WW9A 1O7NA 2D2CD 4NBCD 4QUPA 1O7MA 1RIEA 1SQQE 4HM2A 3TGUE 1NYKA 3D89A 2XSHA 3H1HE 4QDFA 1SJGA 4HM5A 5KLVE 3CXHE 1NTKE 2E4QA 3GZXA 2E74D 2CKFA 4NBAD 3EQQA 3GOBA 3GL2A 4NBDD 4NBBD 4NBFA 4NBDA 2NUMA 2E76D 1NDOA 2E75D 2YFIA 1UUVA 4QDDA 4HM0A 4HM3A 3GCFA 4NBAA 3GB4A 1O7HA 1L0NE 2E4PA 4H0LD 4NBHD 1PPJE 1NTME 1NTZE 3CX5E 4QCKA 1SQBE 3VMHA 3BCCE 4NBGA 2XR8A 1JM1A 2YFJA 2YIUC 1VF5D 1ZRTE 2NWFA 2QJPC 2NVFA 2YFLA 4HM4A 1KB9E 1SQXE 4HM7A 1G8KB 1PP9E 3VMID 4NB9A 2NVEA 3VMGA 3L72E 2QJYC 4OGQD 2XSOA 3H1LE 1Z02A 3VCAA 2HMMA 4NBFD 1O7WA 2HMKA 3GCEA 4P1BH 4QDCA 1RFSA 2FYUE 3C0DA 1ULJA 2NVGA 2A06E 4U3FE 4NBED 2DE7D 1Z01A 3N0QA 1Q90C 2ZT9D 3VMHD 3VMGD 3FOUA 1BCCE 4P1CH 2B24A 3AZCA 4NB9D 3L73E 3GL0A 4NBEA 4AIVA 3CWBE 3DQYA 2HMJA 4PD4E 3GTEA 1SQPE 3EN1A 2Q3WA 1EZVE 3H1IE 3GZYA 2HMLA 4PV1D 1Z03A 5KKZC 2XRXA 1UUWA 2ZYLA 1P84E 2FYNC 2GBXA 2QPZA 4QURA 2DE5D 3L71E 2JZAA 4NBHA 2DE7A 2I7FA 4H13D 4QUQA 4AAYB 4HM1A 2BCCE 2DE6A 1KYOE 3VMIA 1NU1E 5AEUA 5CXMA 1FQTA 2IBZE 2BMQA 5BOKA 2DE5A 1O7GA 1ULIA 4NBBA 3L70E 5AEWA 1O7PA 4HM6A 3H1JE 4QDFB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJK C;  2NUK A;  4NBG D;  2JO6 A;  3VCP A;  3L75 E;  1G8J B;  2BMO A;  1BE3 E;  2BMR A;  5KLI C;  1VM9 A;  2HMO A;  4NBC A;  4EMJ B;  1EG9 A;  1VCK A;  1WQL A;  4HJL A;  3GKQ A;  3GTS A;  4NB8 D;  2B1X A;  2HMN A;  3GKE A;  4H44 D;  5HL4 A;  1L0L E;  2DE6 D;  1SQV E;  4NB8 A;  3H1K E;  4HM8 A;  2YVJ B;  3L74 E;  4HKV A;  2GBW A;  1WW9 A;  1O7N A;  2D2C D;  4NBC D;  4QUP A;  1O7M A;  1RIE A;  1SQQ E;  4HM2 A;  3TGU E;  1NYK A;  3D89 A;  2XSH A;  3H1H E;  4QDF A;  1SJG A;  4HM5 A;  5KLV E;  3CXH E;  1NTK E;  2E4Q A;  3GZX A;  2E74 D;  2CKF A;  4NBA D;  3EQQ A;  3GOB A;  3GL2 A;  4NBD D;  4NBB D;  4NBF A;  4NBD A;  2NUM A;  2E76 D;  1NDO A;  2E75 D;  2YFI A;  1UUV A;  4QDD A;  4HM0 A;  4HM3 A;  3GCF A;  4NBA A;  3GB4 A;  1O7H A;  1L0N E;  2E4P A;  4H0L D;  4NBH D;  1PPJ E;  1NTM E;  1NTZ E;  3CX5 E;  4QCK A;  1SQB E;  3VMH A;  3BCC E;  4NBG A;  2XR8 A;  1JM1 A;  2YFJ A;  2YIU C;  1VF5 D;  1ZRT E;  2NWF A;  2QJP C;  2NVF A;  2YFL A;  4HM4 A;  1KB9 E;  1SQX E;  4HM7 A;  1G8K B;  1PP9 E;  3VMI D;  4NB9 A;  2NVE A;  3VMG A;  3L72 E;  2QJY C;  4OGQ D;  2XSO A;  3H1L E;  1Z02 A;  3VCA A;  2HMM A;  4NBF D;  1O7W A;  2HMK A;  3GCE A;  4P1B H;  4QDC A;  1RFS A;  2FYU E;  3C0D A;  1ULJ A;  2NVG A;  2A06 E;  4U3F E;  4NBE D;  2DE7 D;  1Z01 A;  3N0Q A;  1Q90 C;  2ZT9 D;  3VMH D;  3VMG D;  3FOU A;  1BCC E;  4P1C H;  2B24 A;  3AZC A;  4NB9 D;  3L73 E;  3GL0 A;  4NBE A;  4AIV A;  3CWB E;  3DQY A;  2HMJ A;  4PD4 E;  3GTE A;  1SQP E;  3EN1 A;  2Q3W A;  1EZV E;  3H1I E;  3GZY A;  2HML A;  4PV1 D;  1Z03 A;  5KKZ C;  2XRX A;  1UUW A;  2ZYL A;  1P84 E;  2FYN C;  2GBX A;  2QPZ A;  4QUR A;  2DE5 D;  3L71 E;  2JZA A;  4NBH A;  2DE7 A;  2I7F A;  4H13 D;  4QUQ A;  4AAY B;  4HM1 A;  2BCC E;  2DE6 A;  1KYO E;  3VMI A;  1NU1 E;  5AEU A;  5CXM A;  1FQT A;  2IBZ E;  2BMQ A;  5BOK A;  2DE5 A;  1O7G A;  1ULI A;  4NBB A;  3L70 E;  5AEW A;  1O7P A;  4HM6 A;  3H1J E;  4QDF B; 
#chains in the Genus database with same CATH topology
 2QJK C;  2NUK A;  4NBG D;  2JO6 A;  3VCP A;  3L75 E;  1G8J B;  2BMO A;  1BE3 E;  2BMR A;  5KLI C;  1VM9 A;  2HMO A;  4NBC A;  4EMJ B;  1EG9 A;  1VCK A;  1WQL A;  4HJL A;  3GKQ A;  3GTS A;  4NB8 D;  2B1X A;  2HMN A;  3GKE A;  4H44 D;  5HL4 A;  1L0L E;  2DE6 D;  1SQV E;  4NB8 A;  3H1K E;  4HM8 A;  2YVJ B;  3L74 E;  4HKV A;  2GBW A;  1WW9 A;  1O7N A;  2D2C D;  4NBC D;  4QUP A;  1O7M A;  1RIE A;  1SQQ E;  4HM2 A;  3TGU E;  1NYK A;  3D89 A;  2XSH A;  3H1H E;  4QDF A;  1SJG A;  4HM5 A;  5KLV E;  3CXH E;  1NTK E;  2E4Q A;  3GZX A;  2E74 D;  2CKF A;  4NBA D;  3EQQ A;  3GOB A;  3GL2 A;  4NBD D;  4NBB D;  4NBF A;  4NBD A;  2NUM A;  2E76 D;  1NDO A;  2E75 D;  2YFI A;  1UUV A;  4QDD A;  4HM0 A;  4HM3 A;  3GCF A;  4NBA A;  3GB4 A;  1O7H A;  1L0N E;  2E4P A;  4H0L D;  4NBH D;  1PPJ E;  1NTM E;  1NTZ E;  3CX5 E;  4QCK A;  1SQB E;  3VMH A;  3BCC E;  4NBG A;  2XR8 A;  1JM1 A;  2YFJ A;  2YIU C;  1VF5 D;  1ZRT E;  2NWF A;  2QJP C;  2NVF A;  2YFL A;  4HM4 A;  1KB9 E;  1SQX E;  4HM7 A;  1G8K B;  1PP9 E;  3VMI D;  4NB9 A;  2NVE A;  3VMG A;  3L72 E;  2QJY C;  4OGQ D;  2XSO A;  3H1L E;  1Z02 A;  3VCA A;  2HMM A;  4NBF D;  1O7W A;  2HMK A;  3GCE A;  4P1B H;  4QDC A;  1RFS A;  2FYU E;  3C0D A;  1ULJ A;  2NVG A;  2A06 E;  4U3F E;  4NBE D;  2DE7 D;  1Z01 A;  3N0Q A;  1Q90 C;  2ZT9 D;  3VMH D;  3VMG D;  3FOU A;  1BCC E;  4P1C H;  2B24 A;  3AZC A;  4NB9 D;  3L73 E;  3GL0 A;  4NBE A;  4AIV A;  3CWB E;  3DQY A;  2HMJ A;  4PD4 E;  3GTE A;  1SQP E;  3EN1 A;  2Q3W A;  1EZV E;  3H1I E;  3GZY A;  2HML A;  4PV1 D;  1Z03 A;  5KKZ C;  2XRX A;  1UUW A;  2ZYL A;  1P84 E;  2FYN C;  2GBX A;  2QPZ A;  4QUR A;  2DE5 D;  3L71 E;  2JZA A;  4NBH A;  2DE7 A;  2I7F A;  4H13 D;  4QUQ A;  4AAY B;  4HM1 A;  2BCC E;  2DE6 A;  1KYO E;  3VMI A;  1NU1 E;  5AEU A;  5CXM A;  1FQT A;  2IBZ E;  2BMQ A;  5BOK A;  2DE5 A;  1O7G A;  1ULI A;  4NBB A;  3L70 E;  5AEW A;  1O7P A;  4HM6 A;  3H1J E;  4QDF B; 
#chains in the Genus database with same CATH homology
 2QJK C;  2NUK A;  4NBG D;  2JO6 A;  3VCP A;  3L75 E;  1G8J B;  2BMO A;  1BE3 E;  2BMR A;  5KLI C;  1VM9 A;  2HMO A;  4NBC A;  4EMJ B;  1EG9 A;  1VCK A;  1WQL A;  4HJL A;  3GKQ A;  3GTS A;  4NB8 D;  2B1X A;  2HMN A;  3GKE A;  4H44 D;  5HL4 A;  1L0L E;  2DE6 D;  1SQV E;  4NB8 A;  3H1K E;  4HM8 A;  2YVJ B;  3L74 E;  4HKV A;  2GBW A;  1WW9 A;  1O7N A;  2D2C D;  4NBC D;  4QUP A;  1O7M A;  1RIE A;  1SQQ E;  4HM2 A;  3TGU E;  1NYK A;  3D89 A;  2XSH A;  3H1H E;  4QDF A;  1SJG A;  4HM5 A;  5KLV E;  3CXH E;  1NTK E;  2E4Q A;  3GZX A;  2E74 D;  2CKF A;  4NBA D;  3EQQ A;  3GOB A;  3GL2 A;  4NBD D;  4NBB D;  4NBF A;  4NBD A;  2NUM A;  2E76 D;  1NDO A;  2E75 D;  2YFI A;  1UUV A;  4QDD A;  4HM0 A;  4HM3 A;  3GCF A;  4NBA A;  3GB4 A;  1O7H A;  1L0N E;  2E4P A;  4H0L D;  4NBH D;  1PPJ E;  1NTM E;  1NTZ E;  3CX5 E;  4QCK A;  1SQB E;  3VMH A;  3BCC E;  4NBG A;  2XR8 A;  1JM1 A;  2YFJ A;  2YIU C;  1VF5 D;  1ZRT E;  2NWF A;  2QJP C;  2NVF A;  2YFL A;  4HM4 A;  1KB9 E;  1SQX E;  4HM7 A;  1G8K B;  1PP9 E;  3VMI D;  4NB9 A;  2NVE A;  3VMG A;  3L72 E;  2QJY C;  4OGQ D;  2XSO A;  3H1L E;  1Z02 A;  3VCA A;  2HMM A;  4NBF D;  1O7W A;  2HMK A;  3GCE A;  4P1B H;  4QDC A;  1RFS A;  2FYU E;  3C0D A;  1ULJ A;  2NVG A;  2A06 E;  4U3F E;  4NBE D;  2DE7 D;  1Z01 A;  3N0Q A;  1Q90 C;  2ZT9 D;  3VMH D;  3VMG D;  3FOU A;  1BCC E;  4P1C H;  2B24 A;  3AZC A;  4NB9 D;  3L73 E;  3GL0 A;  4NBE A;  4AIV A;  3CWB E;  3DQY A;  2HMJ A;  4PD4 E;  3GTE A;  1SQP E;  3EN1 A;  2Q3W A;  1EZV E;  3H1I E;  3GZY A;  2HML A;  4PV1 D;  1Z03 A;  5KKZ C;  2XRX A;  1UUW A;  2ZYL A;  1P84 E;  2FYN C;  2GBX A;  2QPZ A;  4QUR A;  2DE5 D;  3L71 E;  2JZA A;  4NBH A;  2DE7 A;  2I7F A;  4H13 D;  4QUQ A;  4AAY B;  4HM1 A;  2BCC E;  2DE6 A;  1KYO E;  3VMI A;  1NU1 E;  5AEU A;  5CXM A;  1FQT A;  2IBZ E;  2BMQ A;  5BOK A;  2DE5 A;  1O7G A;  1ULI A;  4NBB A;  3L70 E;  5AEW A;  1O7P A;  4HM6 A;  3H1J E;  4QDF B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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