2B24A

Crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp. bound to indole
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
440
structure length
440
Chain Sequence
MLSNELRQTLQKGLHDVNSDWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELGLAPPDPQFALYGEHIHTGHGHGLGIIGPPPGMPLPEFMGLPENIVEELERRLTPEQVEIFRPTAFIHGTVFPNLSIGNFLMGKDHLSAPTAFLTLRLWHPLGPDKMEVMSFFLVEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMGGQFAKTGELNYQMGRGVLEPDPNWTGPGEAYPLDYAEANQRNFLEYWMQLMLAESP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords naphthalene dioxygenase large subunit
publication title Structure and Increased Thermostability of Rhodococcus sp. Naphthalene 1,2-Dioxygenase.
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 130
structure length 440
sequence length 440
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2005-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2b24A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2b24A01
3AZCA 1L0NE 2XRXA 3DQYA 3GKEA 1RIEA 2E4PA 4H44D 2FYUE 1UUWA 3C0DA 4NBFA 1Q90C 1VF5D 3N0QA 2FYNC 4NBDA 1O7HA 2YFIA 1NTZE 2XSOA 3EQQA 4H0LD 2NVFA 2D2CD 1NTME 3GTEA 1NU1E 1G8JB 2A06E 4EMJB 1SQBE 4AAYB 1UUVA 3FOUA 2DE5A 2Q3WA 4NBFD 2QPZA 1EZVE 4QUQA 1KYOE 4NBAD 1Z03A 3EN1A 2HMOA 1SQVE 3L71E 3GTSA 1O7NA 1P84E 2ZT9D 3GCEA 2DE7A 4NBHA 1SJGA 4NBCD 2E76D 1EG9A 2YIUC 1VCKA 4NBED 2YVJB 1O7PA 1Z02A 2ZYLA 3H1IE 4QDCA 3TGUE 4HM0A 1FQTA 4P1CH 3GL0A 4HM1A 4HM4A 4NBGD 3VMIA 4NB8A 5AEUA 4HM2A 2BMQA 4HM5A 4NBHD 2YFJA 2HMKA 2NVEA 2NWFA 3GOBA 4HKVA 4NBBA 3L72E 2QJPC 2JO6A 4NBDD 1L0LE 4HJLA 4HM8A 1G8KB 2B1XA 3GB4A 4NB9A 1VM9A 2BMRA 3VMGA 2HMLA 2QJYC 3CXHE 4QDDA 5KKZC 4QCKA 3GCFA 3L70E 1ULJA 1SQXE 1KB9E 1O7GA 1ZRTE 1JM1A 1PP9E 3GKQA 2NVGA 4P1BH 2YFLA 2DE5D 2HMNA 3H1HE 4HM6A 4OGQD 1O7MA 1WW9A 3CWBE 1WQLA 4H13D 5BOKA 1PPJE 4NB9D 4U3FE 1O7WA 4QUPA 3L74E 5CXMA 1NDOA 2B24A 2DE7D 2GBXA 1ULIA 3CX5E 1SQPE 3BCCE 2E4QA 3L75E 4PV1D 2NUKA 5HL4A 3VMHA 5KLVE 2NUMA 4HM3A 1RFSA 2BCCE 4HM7A 4QURA 3VCPA 4NBAA 2DE6A 2JZAA 2BMOA 2QJKC 3H1JE 3H1KE 2CKFA 2GBWA 1Z01A 3GZYA 1NTKE 4NBCA 5KLIC 5AEWA 4NBEA 4QDFB 3L73E 4NB8D 3VMID 1BE3E 3D89A 2I7FA 3GL2A 1NYKA 3VMHD 1SQQE 4QDFA 2E74D 4NBBD 4AIVA 3H1LE 2IBZE 2E75D 3GZXA 4NBGA 2HMJA 2XR8A 3VMGD 2DE6D 4PD4E 1BCCE 3VCAA 2HMMA 2XSHA
chains in the Genus database with same CATH superfamily
3AZCA 1L0NE 2XRXA 3DQYA 3GKEA 1RIEA 2E4PA 4H44D 2FYUE 1UUWA 3C0DA 4NBFA 1Q90C 1VF5D 3N0QA 2FYNC 4NBDA 1O7HA 2YFIA 1NTZE 2XSOA 3EQQA 4H0LD 2NVFA 2D2CD 1NTME 3GTEA 1NU1E 1G8JB 2A06E 4EMJB 1SQBE 4AAYB 1UUVA 3FOUA 2DE5A 2Q3WA 4NBFD 2QPZA 1EZVE 4QUQA 1KYOE 4NBAD 1Z03A 3EN1A 2HMOA 1SQVE 3L71E 3GTSA 1O7NA 1P84E 2ZT9D 3GCEA 2DE7A 4NBHA 1SJGA 4NBCD 2E76D 1EG9A 2YIUC 1VCKA 4NBED 2YVJB 1O7PA 1Z02A 2ZYLA 3H1IE 4QDCA 3TGUE 4HM0A 1FQTA 4P1CH 3GL0A 4HM1A 4HM4A 4NBGD 3VMIA 4NB8A 5AEUA 4HM2A 2BMQA 4HM5A 4NBHD 2YFJA 2HMKA 2NVEA 2NWFA 3GOBA 4HKVA 4NBBA 3L72E 2QJPC 2JO6A 4NBDD 1L0LE 4HJLA 4HM8A 1G8KB 2B1XA 3GB4A 4NB9A 1VM9A 2BMRA 3VMGA 2HMLA 2QJYC 3CXHE 4QDDA 5KKZC 4QCKA 3GCFA 3L70E 1ULJA 1SQXE 1KB9E 1O7GA 1ZRTE 1JM1A 1PP9E 3GKQA 2NVGA 4P1BH 2YFLA 2DE5D 2HMNA 3H1HE 4HM6A 4OGQD 1O7MA 1WW9A 3CWBE 1WQLA 4H13D 5BOKA 1PPJE 4NB9D 4U3FE 1O7WA 4QUPA 3L74E 5CXMA 1NDOA 2B24A 2DE7D 2GBXA 1ULIA 3CX5E 1SQPE 3BCCE 2E4QA 3L75E 4PV1D 2NUKA 5HL4A 3VMHA 5KLVE 2NUMA 4HM3A 1RFSA 2BCCE 4HM7A 4QURA 3VCPA 4NBAA 2DE6A 2JZAA 2BMOA 2QJKC 3H1JE 3H1KE 2CKFA 2GBWA 1Z01A 3GZYA 1NTKE 4NBCA 5KLIC 5AEWA 4NBEA 4QDFB 3L73E 4NB8D 3VMID 1BE3E 3D89A 2I7FA 3GL2A 1NYKA 3VMHD 1SQQE 4QDFA 2E74D 4NBBD 4AIVA 3H1LE 2IBZE 2E75D 3GZXA 4NBGA 2HMJA 2XR8A 3VMGD 2DE6D 4PD4E 1BCCE 3VCAA 2HMMA 2XSHA
chains in the Genus database with same CATH topology
3AZCA 1L0NE 2XRXA 3DQYA 3GKEA 1RIEA 2E4PA 4H44D 2FYUE 1UUWA 3C0DA 4NBFA 1Q90C 1VF5D 3N0QA 2FYNC 4NBDA 1O7HA 2YFIA 1NTZE 2XSOA 3EQQA 4H0LD 2NVFA 2D2CD 1NTME 3GTEA 1NU1E 1G8JB 2A06E 4EMJB 1SQBE 4AAYB 1UUVA 3FOUA 2DE5A 2Q3WA 4NBFD 2QPZA 1EZVE 4QUQA 1KYOE 4NBAD 1Z03A 3EN1A 2HMOA 1SQVE 3L71E 3GTSA 1O7NA 1P84E 2ZT9D 3GCEA 2DE7A 4NBHA 1SJGA 4NBCD 2E76D 1EG9A 2YIUC 1VCKA 4NBED 2YVJB 1O7PA 1Z02A 2ZYLA 3H1IE 4QDCA 3TGUE 4HM0A 1FQTA 4P1CH 3GL0A 4HM1A 4HM4A 4NBGD 3VMIA 4NB8A 5AEUA 4HM2A 2BMQA 4HM5A 4NBHD 2YFJA 2HMKA 2NVEA 2NWFA 3GOBA 4HKVA 4NBBA 3L72E 2QJPC 2JO6A 4NBDD 1L0LE 4HJLA 4HM8A 1G8KB 2B1XA 3GB4A 4NB9A 1VM9A 2BMRA 3VMGA 2HMLA 2QJYC 3CXHE 4QDDA 5KKZC 4QCKA 3GCFA 3L70E 1ULJA 1SQXE 1KB9E 1O7GA 1ZRTE 1JM1A 1PP9E 3GKQA 2NVGA 4P1BH 2YFLA 2DE5D 2HMNA 3H1HE 4HM6A 4OGQD 1O7MA 1WW9A 3CWBE 1WQLA 4H13D 5BOKA 1PPJE 4NB9D 4U3FE 1O7WA 4QUPA 3L74E 5CXMA 1NDOA 2B24A 2DE7D 2GBXA 1ULIA 3CX5E 1SQPE 3BCCE 2E4QA 3L75E 4PV1D 2NUKA 5HL4A 3VMHA 5KLVE 2NUMA 4HM3A 1RFSA 2BCCE 4HM7A 4QURA 3VCPA 4NBAA 2DE6A 2JZAA 2BMOA 2QJKC 3H1JE 3H1KE 2CKFA 2GBWA 1Z01A 3GZYA 1NTKE 4NBCA 5KLIC 5AEWA 4NBEA 4QDFB 3L73E 4NB8D 3VMID 1BE3E 3D89A 2I7FA 3GL2A 1NYKA 3VMHD 1SQQE 4QDFA 2E74D 4NBBD 4AIVA 3H1LE 2IBZE 2E75D 3GZXA 4NBGA 2HMJA 2XR8A 3VMGD 2DE6D 4PD4E 1BCCE 3VCAA 2HMMA 2XSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AZC A;  1L0N E;  2XRX A;  3DQY A;  3GKE A;  1RIE A;  2E4P A;  4H44 D;  2FYU E;  1UUW A;  3C0D A;  4NBF A;  1Q90 C;  1VF5 D;  3N0Q A;  2FYN C;  4NBD A;  1O7H A;  2YFI A;  1NTZ E;  2XSO A;  3EQQ A;  4H0L D;  2NVF A;  2D2C D;  1NTM E;  3GTE A;  1NU1 E;  1G8J B;  2A06 E;  4EMJ B;  1SQB E;  4AAY B;  1UUV A;  3FOU A;  2DE5 A;  2Q3W A;  4NBF D;  2QPZ A;  1EZV E;  4QUQ A;  1KYO E;  4NBA D;  1Z03 A;  3EN1 A;  2HMO A;  1SQV E;  3L71 E;  3GTS A;  1O7N A;  1P84 E;  2ZT9 D;  3GCE A;  2DE7 A;  4NBH A;  1SJG A;  4NBC D;  2E76 D;  1EG9 A;  2YIU C;  1VCK A;  4NBE D;  2YVJ B;  1O7P A;  1Z02 A;  2ZYL A;  3H1I E;  4QDC A;  3TGU E;  4HM0 A;  1FQT A;  4P1C H;  3GL0 A;  4HM1 A;  4HM4 A;  4NBG D;  3VMI A;  4NB8 A;  5AEU A;  4HM2 A;  2BMQ A;  4HM5 A;  4NBH D;  2YFJ A;  2HMK A;  2NVE A;  2NWF A;  3GOB A;  4HKV A;  4NBB A;  3L72 E;  2QJP C;  2JO6 A;  4NBD D;  1L0L E;  4HJL A;  4HM8 A;  1G8K B;  2B1X A;  3GB4 A;  4NB9 A;  1VM9 A;  2BMR A;  3VMG A;  2HML A;  2QJY C;  3CXH E;  4QDD A;  5KKZ C;  4QCK A;  3GCF A;  3L70 E;  1ULJ A;  1SQX E;  1KB9 E;  1O7G A;  1ZRT E;  1JM1 A;  1PP9 E;  3GKQ A;  2NVG A;  4P1B H;  2YFL A;  2DE5 D;  2HMN A;  3H1H E;  4HM6 A;  4OGQ D;  1O7M A;  1WW9 A;  3CWB E;  1WQL A;  4H13 D;  5BOK A;  1PPJ E;  4NB9 D;  4U3F E;  1O7W A;  4QUP A;  3L74 E;  5CXM A;  1NDO A;  2B24 A;  2DE7 D;  2GBX A;  1ULI A;  3CX5 E;  1SQP E;  3BCC E;  2E4Q A;  3L75 E;  4PV1 D;  2NUK A;  5HL4 A;  3VMH A;  5KLV E;  2NUM A;  4HM3 A;  1RFS A;  2BCC E;  4HM7 A;  4QUR A;  3VCP A;  4NBA A;  2DE6 A;  2JZA A;  2BMO A;  2QJK C;  3H1J E;  3H1K E;  2CKF A;  2GBW A;  1Z01 A;  3GZY A;  1NTK E;  4NBC A;  5KLI C;  5AEW A;  4NBE A;  4QDF B;  3L73 E;  4NB8 D;  3VMI D;  1BE3 E;  3D89 A;  2I7F A;  3GL2 A;  1NYK A;  3VMH D;  1SQQ E;  4QDF A;  2E74 D;  4NBB D;  4AIV A;  3H1L E;  2IBZ E;  2E75 D;  3GZX A;  4NBG A;  2HMJ A;  2XR8 A;  3VMG D;  2DE6 D;  4PD4 E;  1BCC E;  3VCA A;  2HMM A;  2XSH A; 
#chains in the Genus database with same CATH topology
 3AZC A;  1L0N E;  2XRX A;  3DQY A;  3GKE A;  1RIE A;  2E4P A;  4H44 D;  2FYU E;  1UUW A;  3C0D A;  4NBF A;  1Q90 C;  1VF5 D;  3N0Q A;  2FYN C;  4NBD A;  1O7H A;  2YFI A;  1NTZ E;  2XSO A;  3EQQ A;  4H0L D;  2NVF A;  2D2C D;  1NTM E;  3GTE A;  1NU1 E;  1G8J B;  2A06 E;  4EMJ B;  1SQB E;  4AAY B;  1UUV A;  3FOU A;  2DE5 A;  2Q3W A;  4NBF D;  2QPZ A;  1EZV E;  4QUQ A;  1KYO E;  4NBA D;  1Z03 A;  3EN1 A;  2HMO A;  1SQV E;  3L71 E;  3GTS A;  1O7N A;  1P84 E;  2ZT9 D;  3GCE A;  2DE7 A;  4NBH A;  1SJG A;  4NBC D;  2E76 D;  1EG9 A;  2YIU C;  1VCK A;  4NBE D;  2YVJ B;  1O7P A;  1Z02 A;  2ZYL A;  3H1I E;  4QDC A;  3TGU E;  4HM0 A;  1FQT A;  4P1C H;  3GL0 A;  4HM1 A;  4HM4 A;  4NBG D;  3VMI A;  4NB8 A;  5AEU A;  4HM2 A;  2BMQ A;  4HM5 A;  4NBH D;  2YFJ A;  2HMK A;  2NVE A;  2NWF A;  3GOB A;  4HKV A;  4NBB A;  3L72 E;  2QJP C;  2JO6 A;  4NBD D;  1L0L E;  4HJL A;  4HM8 A;  1G8K B;  2B1X A;  3GB4 A;  4NB9 A;  1VM9 A;  2BMR A;  3VMG A;  2HML A;  2QJY C;  3CXH E;  4QDD A;  5KKZ C;  4QCK A;  3GCF A;  3L70 E;  1ULJ A;  1SQX E;  1KB9 E;  1O7G A;  1ZRT E;  1JM1 A;  1PP9 E;  3GKQ A;  2NVG A;  4P1B H;  2YFL A;  2DE5 D;  2HMN A;  3H1H E;  4HM6 A;  4OGQ D;  1O7M A;  1WW9 A;  3CWB E;  1WQL A;  4H13 D;  5BOK A;  1PPJ E;  4NB9 D;  4U3F E;  1O7W A;  4QUP A;  3L74 E;  5CXM A;  1NDO A;  2B24 A;  2DE7 D;  2GBX A;  1ULI A;  3CX5 E;  1SQP E;  3BCC E;  2E4Q A;  3L75 E;  4PV1 D;  2NUK A;  5HL4 A;  3VMH A;  5KLV E;  2NUM A;  4HM3 A;  1RFS A;  2BCC E;  4HM7 A;  4QUR A;  3VCP A;  4NBA A;  2DE6 A;  2JZA A;  2BMO A;  2QJK C;  3H1J E;  3H1K E;  2CKF A;  2GBW A;  1Z01 A;  3GZY A;  1NTK E;  4NBC A;  5KLI C;  5AEW A;  4NBE A;  4QDF B;  3L73 E;  4NB8 D;  3VMI D;  1BE3 E;  3D89 A;  2I7F A;  3GL2 A;  1NYK A;  3VMH D;  1SQQ E;  4QDF A;  2E74 D;  4NBB D;  4AIV A;  3H1L E;  2IBZ E;  2E75 D;  3GZX A;  4NBG A;  2HMJ A;  2XR8 A;  3VMG D;  2DE6 D;  4PD4 E;  1BCC E;  3VCA A;  2HMM A;  2XSH A; 
#chains in the Genus database with same CATH homology
 3AZC A;  1L0N E;  2XRX A;  3DQY A;  3GKE A;  1RIE A;  2E4P A;  4H44 D;  2FYU E;  1UUW A;  3C0D A;  4NBF A;  1Q90 C;  1VF5 D;  3N0Q A;  2FYN C;  4NBD A;  1O7H A;  2YFI A;  1NTZ E;  2XSO A;  3EQQ A;  4H0L D;  2NVF A;  2D2C D;  1NTM E;  3GTE A;  1NU1 E;  1G8J B;  2A06 E;  4EMJ B;  1SQB E;  4AAY B;  1UUV A;  3FOU A;  2DE5 A;  2Q3W A;  4NBF D;  2QPZ A;  1EZV E;  4QUQ A;  1KYO E;  4NBA D;  1Z03 A;  3EN1 A;  2HMO A;  1SQV E;  3L71 E;  3GTS A;  1O7N A;  1P84 E;  2ZT9 D;  3GCE A;  2DE7 A;  4NBH A;  1SJG A;  4NBC D;  2E76 D;  1EG9 A;  2YIU C;  1VCK A;  4NBE D;  2YVJ B;  1O7P A;  1Z02 A;  2ZYL A;  3H1I E;  4QDC A;  3TGU E;  4HM0 A;  1FQT A;  4P1C H;  3GL0 A;  4HM1 A;  4HM4 A;  4NBG D;  3VMI A;  4NB8 A;  5AEU A;  4HM2 A;  2BMQ A;  4HM5 A;  4NBH D;  2YFJ A;  2HMK A;  2NVE A;  2NWF A;  3GOB A;  4HKV A;  4NBB A;  3L72 E;  2QJP C;  2JO6 A;  4NBD D;  1L0L E;  4HJL A;  4HM8 A;  1G8K B;  2B1X A;  3GB4 A;  4NB9 A;  1VM9 A;  2BMR A;  3VMG A;  2HML A;  2QJY C;  3CXH E;  4QDD A;  5KKZ C;  4QCK A;  3GCF A;  3L70 E;  1ULJ A;  1SQX E;  1KB9 E;  1O7G A;  1ZRT E;  1JM1 A;  1PP9 E;  3GKQ A;  2NVG A;  4P1B H;  2YFL A;  2DE5 D;  2HMN A;  3H1H E;  4HM6 A;  4OGQ D;  1O7M A;  1WW9 A;  3CWB E;  1WQL A;  4H13 D;  5BOK A;  1PPJ E;  4NB9 D;  4U3F E;  1O7W A;  4QUP A;  3L74 E;  5CXM A;  1NDO A;  2B24 A;  2DE7 D;  2GBX A;  1ULI A;  3CX5 E;  1SQP E;  3BCC E;  2E4Q A;  3L75 E;  4PV1 D;  2NUK A;  5HL4 A;  3VMH A;  5KLV E;  2NUM A;  4HM3 A;  1RFS A;  2BCC E;  4HM7 A;  4QUR A;  3VCP A;  4NBA A;  2DE6 A;  2JZA A;  2BMO A;  2QJK C;  3H1J E;  3H1K E;  2CKF A;  2GBW A;  1Z01 A;  3GZY A;  1NTK E;  4NBC A;  5KLI C;  5AEW A;  4NBE A;  4QDF B;  3L73 E;  4NB8 D;  3VMI D;  1BE3 E;  3D89 A;  2I7F A;  3GL2 A;  1NYK A;  3VMH D;  1SQQ E;  4QDF A;  2E74 D;  4NBB D;  4AIV A;  3H1L E;  2IBZ E;  2E75 D;  3GZX A;  4NBG A;  2HMJ A;  2XR8 A;  3VMG D;  2DE6 D;  4PD4 E;  1BCC E;  3VCA A;  2HMM A;  2XSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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