2B3JA

Crystal structure of staphylococcus aureus trna adenosine deaminase, tada, in complex with rna
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
151
structure length
151
Chain Sequence
MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/rna
molecule keywords anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)
publication title Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA.
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus mu50
total genus 49
structure length 151
sequence length 151
chains with identical sequence B, C, D
ec nomenclature ec 3.5.4.33: tRNA(adenine(34)) deaminase.
pdb deposition date 2005-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14437 MafB19-deam MafB19-like deaminase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 2b3jA00
2Z3GA 4LCPA 4OCLB 2PW9A 1MQ0A 1UAQA 2B3JA 2HXVA 4OCMA 4MSMA 4OCNB 3R2NA 4ZD5A 4O8YB 3SBGA 4D10F 2NX8A 3ZPGA 2W4LA 4ZFRA 4O8XB 2P87A 3E1UA 2QLCA 1OI0A 2O95A 4JXEA 1YSBA 4OWPA 5CW6A 2Z3JA 3EX8A 1TIYA 1ALNA 1R5XA 4OCLA 4KITC 4ZD4A 2HVWA 1JTKA 1YSDA 4LCOA 5GAOA 2O3KA 1CTUA 5M59B 2KCQA 4PQTA 4O8YA 2NYTA 2O96A 4ILGC 2D30A 4P9CA 2B3ZA 2Z3HA 5M52C 4WIFA 2D5NA 2FR5A 2RPZA 2Z3IA 4G3MA 4LD2A 4ZFTA 3RZVA 4BGDC 1UX0A 1UWZA 2G6VA 2G84A 4WIGA 4F3WA 1OX7A 4LD4A 1Z3AA 1CTTA 3OJ6A 4OCMB 4QFTA 1WN5A 2O7PA 3G8QA 3MPZA 4OCNA 3RZUA 4MSQA 4MS7A 1WKQA 4HRWA 3OCQA 4MSJA 2P8RA 4O8XA 3ZEFB 1AF2A 1WN6A 4OWPB 1WWRA 1VQ2A 4EG2A 2KKSA 3DMOA 4HRQA 1P6OA 3IJFX 2ZNVA 2OG4A 2FR6A 2A8NA 4F7OA 2OBCA 4LCNA 3B8FA 4I43B 5C2OA 4P9DA 4MSDA 3DH1A 1RB7A 2ZNRA 5DCAJ 3ZPCA 4LC5A 4P9EA 4K1RA 1R5TA 1UX1A 4NQLA 4E0QA 1ZABA 2HVVA
chains in the Genus database with same CATH superfamily
2Z3GA 4LCPA 4OCLB 2PW9A 1MQ0A 1UAQA 2B3JA 2HXVA 4OCMA 4MSMA 4OCNB 1P4RA 3R2NA 4ZD5A 4O8YB 3SBGA 4D10F 2NX8A 3ZPGA 2W4LA 4ZFRA 4O8XB 2P87A 1PKXA 4J6EA 3E1UA 2QLCA 1OI0A 1THZA 2O95A 4JXEA 1YSBA 4OWPA 5CW6A 2Z3JA 3EX8A 1TIYA 1ALNA 1R5XA 4OCLA 4KITC 4ZD4A 2HVWA 1JTKA 1YSDA 4LCOA 1VK9A 5GAOA 2O3KA 1CTUA 5M59B 2KCQA 4PQTA 4O8YA 2NYTA 2O96A 4ILGC 2D30A 4P9CA 2B3ZA 3ZZMA 2Z3HA 5M52C 4WIFA 1G8MA 2D5NA 2FR5A 2RPZA 2Z3IA 4G3MA 4LD2A 4ZFTA 3RZVA 2B1GA 4BGDC 1UX0A 1UWZA 2G6VA 2G84A 4WIGA 4F3WA 1OX7A 4LD4A 1Z3AA 1CTTA 3OJ6A 4OCMB 4QFTA 1WN5A 4EHIA 2O7PA 3G8QA 3MPZA 4OCNA 3RZUA 4MSQA 2B1IA 4MS7A 1WKQA 4HRWA 3OCQA 4MSJA 2P8RA 4A1OA 4O8XA 3ZEFB 1AF2A 1WN6A 3BH1A 1WWRA 4OWPB 3VX8A 1VQ2A 4EG2A 2KKSA 3DMOA 4HRQA 1P6OA 4GGMX 3IJFX 2ZNVA 2OG4A 2FR6A 2A8NA 1OZ0A 4F7OA 2OBCA 4LCNA 2IU3A 3B8FA 4I43B 5C2OA 1PL0A 4P9DA 4MSDA 3DH1A 1M9NA 2ZNRA 1RB7A 1ZCZA 5DCAJ 3ZPCA 4LC5A 4P9EA 4K1RA 1R5TA 1UX1A 2IU0A 4NQLA 4E0QA 1ZABA 2HVVA
chains in the Genus database with same CATH topology
2Z3GA 4LCPA 4OCLB 2PW9A 1MQ0A 1UAQA 2B3JA 2HXVA 4OCMA 4MSMA 4OCNB 3R2NA 4ZD5A 4O8YB 3SBGA 4D10F 2NX8A 3ZPGA 2W4LA 4ZFRA 4O8XB 2P87A 3E1UA 2QLCA 1OI0A 2O95A 4JXEA 1YSBA 4OWPA 5CW6A 2Z3JA 3EX8A 1TIYA 1ALNA 1R5XA 4OCLA 4KITC 4ZD4A 2HVWA 1JTKA 1YSDA 4LCOA 5GAOA 2O3KA 1CTUA 5M59B 2KCQA 4PQTA 4O8YA 2NYTA 2O96A 4ILGC 2D30A 4P9CA 2B3ZA 2Z3HA 5M52C 4WIFA 2D5NA 2FR5A 2RPZA 2Z3IA 4G3MA 4LD2A 4ZFTA 3RZVA 4BGDC 1UX0A 1UWZA 2G6VA 2G84A 4WIGA 4F3WA 1OX7A 4LD4A 1Z3AA 1CTTA 3OJ6A 4OCMB 4QFTA 1WN5A 2O7PA 3G8QA 3MPZA 4OCNA 3RZUA 4MSQA 4MS7A 1WKQA 4HRWA 3OCQA 4MSJA 2P8RA 4O8XA 3ZEFB 1AF2A 1WN6A 4OWPB 1WWRA 1VQ2A 4EG2A 2KKSA 3DMOA 4HRQA 1P6OA 3IJFX 2ZNVA 2OG4A 2FR6A 2A8NA 4F7OA 2OBCA 4LCNA 3B8FA 4I43B 5C2OA 4P9DA 4MSDA 3DH1A 1RB7A 2ZNRA 5DCAJ 3ZPCA 4LC5A 4P9EA 4K1RA 1R5TA 1UX1A 4NQLA 4E0QA 1ZABA 2HVVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z3G A;  4LCP A;  4OCL B;  2PW9 A;  1MQ0 A;  1UAQ A;  2B3J A;  2HXV A;  4OCM A;  4MSM A;  4OCN B;  3R2N A;  4ZD5 A;  4O8Y B;  3SBG A;  4D10 F;  2NX8 A;  3ZPG A;  2W4L A;  4ZFR A;  4O8X B;  2P87 A;  3E1U A;  2QLC A;  1OI0 A;  2O95 A;  4JXE A;  1YSB A;  4OWP A;  5CW6 A;  2Z3J A;  3EX8 A;  1TIY A;  1ALN A;  1R5X A;  4OCL A;  4KIT C;  4ZD4 A;  2HVW A;  1JTK A;  1YSD A;  4LCO A;  5GAO A;  2O3K A;  1CTU A;  5M59 B;  2KCQ A;  4PQT A;  4O8Y A;  2NYT A;  2O96 A;  4ILG C;  2D30 A;  4P9C A;  2B3Z A;  2Z3H A;  5M52 C;  4WIF A;  2D5N A;  2FR5 A;  2RPZ A;  2Z3I A;  4G3M A;  4LD2 A;  4ZFT A;  3RZV A;  4BGD C;  1UX0 A;  1UWZ A;  2G6V A;  2G84 A;  4WIG A;  4F3W A;  1OX7 A;  4LD4 A;  1Z3A A;  1CTT A;  3OJ6 A;  4OCM B;  4QFT A;  1WN5 A;  2O7P A;  3G8Q A;  3MPZ A;  4OCN A;  3RZU A;  4MSQ A;  4MS7 A;  1WKQ A;  4HRW A;  3OCQ A;  4MSJ A;  2P8R A;  4O8X A;  3ZEF B;  1AF2 A;  1WN6 A;  4OWP B;  1WWR A;  1VQ2 A;  4EG2 A;  2KKS A;  3DMO A;  4HRQ A;  1P6O A;  3IJF X;  2ZNV A;  2OG4 A;  2FR6 A;  2A8N A;  4F7O A;  2OBC A;  4LCN A;  3B8F A;  4I43 B;  5C2O A;  4P9D A;  4MSD A;  3DH1 A;  1RB7 A;  2ZNR A;  5DCA J;  3ZPC A;  4LC5 A;  4P9E A;  4K1R A;  1R5T A;  1UX1 A;  4NQL A;  4E0Q A;  1ZAB A;  2HVV A; 
#chains in the Genus database with same CATH topology
 2Z3G A;  4LCP A;  4OCL B;  2PW9 A;  1MQ0 A;  1UAQ A;  2B3J A;  2HXV A;  4OCM A;  4MSM A;  4OCN B;  1P4R A;  3R2N A;  4ZD5 A;  4O8Y B;  3SBG A;  4D10 F;  2NX8 A;  3ZPG A;  2W4L A;  4ZFR A;  4O8X B;  2P87 A;  1PKX A;  4J6E A;  3E1U A;  2QLC A;  1OI0 A;  1THZ A;  2O95 A;  4JXE A;  1YSB A;  4OWP A;  5CW6 A;  2Z3J A;  3EX8 A;  1TIY A;  1ALN A;  1R5X A;  4OCL A;  4KIT C;  4ZD4 A;  2HVW A;  1JTK A;  1YSD A;  4LCO A;  1VK9 A;  5GAO A;  2O3K A;  1CTU A;  5M59 B;  2KCQ A;  4PQT A;  4O8Y A;  2NYT A;  2O96 A;  4ILG C;  2D30 A;  4P9C A;  2B3Z A;  3ZZM A;  2Z3H A;  5M52 C;  4WIF A;  1G8M A;  2D5N A;  2FR5 A;  2RPZ A;  2Z3I A;  4G3M A;  4LD2 A;  4ZFT A;  3RZV A;  2B1G A;  4BGD C;  1UX0 A;  1UWZ A;  2G6V A;  2G84 A;  4WIG A;  4F3W A;  1OX7 A;  4LD4 A;  1Z3A A;  1CTT A;  3OJ6 A;  4OCM B;  4QFT A;  1WN5 A;  4EHI A;  2O7P A;  3G8Q A;  3MPZ A;  4OCN A;  3RZU A;  4MSQ A;  2B1I A;  4MS7 A;  1WKQ A;  4HRW A;  3OCQ A;  4MSJ A;  2P8R A;  4A1O A;  4O8X A;  3ZEF B;  1AF2 A;  1WN6 A;  3BH1 A;  1WWR A;  4OWP B;  3VX8 A;  1VQ2 A;  4EG2 A;  2KKS A;  3DMO A;  4HRQ A;  1P6O A;  4GGM X;  3IJF X;  2ZNV A;  2OG4 A;  2FR6 A;  2A8N A;  1OZ0 A;  4F7O A;  2OBC A;  4LCN A;  2IU3 A;  3B8F A;  4I43 B;  5C2O A;  1PL0 A;  4P9D A;  4MSD A;  3DH1 A;  1M9N A;  2ZNR A;  1RB7 A;  1ZCZ A;  5DCA J;  3ZPC A;  4LC5 A;  4P9E A;  4K1R A;  1R5T A;  1UX1 A;  2IU0 A;  4NQL A;  4E0Q A;  1ZAB A;  2HVV A; 
#chains in the Genus database with same CATH homology
 2Z3G A;  4LCP A;  4OCL B;  2PW9 A;  1MQ0 A;  1UAQ A;  2B3J A;  2HXV A;  4OCM A;  4MSM A;  4OCN B;  3R2N A;  4ZD5 A;  4O8Y B;  3SBG A;  4D10 F;  2NX8 A;  3ZPG A;  2W4L A;  4ZFR A;  4O8X B;  2P87 A;  3E1U A;  2QLC A;  1OI0 A;  2O95 A;  4JXE A;  1YSB A;  4OWP A;  5CW6 A;  2Z3J A;  3EX8 A;  1TIY A;  1ALN A;  1R5X A;  4OCL A;  4KIT C;  4ZD4 A;  2HVW A;  1JTK A;  1YSD A;  4LCO A;  5GAO A;  2O3K A;  1CTU A;  5M59 B;  2KCQ A;  4PQT A;  4O8Y A;  2NYT A;  2O96 A;  4ILG C;  2D30 A;  4P9C A;  2B3Z A;  2Z3H A;  5M52 C;  4WIF A;  2D5N A;  2FR5 A;  2RPZ A;  2Z3I A;  4G3M A;  4LD2 A;  4ZFT A;  3RZV A;  4BGD C;  1UX0 A;  1UWZ A;  2G6V A;  2G84 A;  4WIG A;  4F3W A;  1OX7 A;  4LD4 A;  1Z3A A;  1CTT A;  3OJ6 A;  4OCM B;  4QFT A;  1WN5 A;  2O7P A;  3G8Q A;  3MPZ A;  4OCN A;  3RZU A;  4MSQ A;  4MS7 A;  1WKQ A;  4HRW A;  3OCQ A;  4MSJ A;  2P8R A;  4O8X A;  3ZEF B;  1AF2 A;  1WN6 A;  4OWP B;  1WWR A;  1VQ2 A;  4EG2 A;  2KKS A;  3DMO A;  4HRQ A;  1P6O A;  3IJF X;  2ZNV A;  2OG4 A;  2FR6 A;  2A8N A;  4F7O A;  2OBC A;  4LCN A;  3B8F A;  4I43 B;  5C2O A;  4P9D A;  4MSD A;  3DH1 A;  1RB7 A;  2ZNR A;  5DCA J;  3ZPC A;  4LC5 A;  4P9E A;  4K1R A;  1R5T A;  1UX1 A;  4NQL A;  4E0Q A;  1ZAB A;  2HVV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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