2B5SA

Crystal structure of peach pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
92
structure length
92
Chain Sequence
MITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPYKISASTNCATVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords Non-specific lipid transfer protein
publication title Crystal Structure of Peach Pru p 3, the Prototypic Member of the Family of Plant Non-specific Lipid Transfer Protein Pan-allergens
pubmed doi rcsb
source organism Prunus persica
total genus 34
structure length 92
sequence length 92
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 2b5sA00
1SIYA 1T12A 1MZLA 1B1UA 1TUKA 1LIPA 1BE2A 1GH1A 2LVFA 2ALGA 1BEAA 2B5SA 1HSSA 1BV2A 2MALA 1MIDA 4CVWC 5DOMA 4XUWA 1N89A 2N81A 1FK7A 1FK0A 1FK4A 1S6DA 1PSYA 1UVCA 1FK6A 1PNBB 2RKNA 3GSHA 1HYPA 1UVBA 1BWOA 1FK5A 2DS2B 1CZ2A 1SM7A 1TMQB 1L6HA 1FK2A 1FK3A 1BIPA 1MZMA 1FK1A 1JTBA 2N2ZA 1AFHA 1UVAA 1W2QA 1RZLA 1BFAA
chains in the Genus database with same CATH superfamily
1SIYA 1MIYA 1MIVA 1T12A 1MZLA 1B1UA 1TUKA 3HMJG 1LIPA 1BE2A 1GH1A 2LVFA 2ALGA 1BEAA 2B5SA 1HSSA 1BV2A 2MALA 1MIDA 4CVWC 5DOMA 4XUWA 1N89A 3H37A 2N81A 1FK7A 1FK0A 1FK4A 1S6DA 1PSYA 1UVCA 1FK6A 1PNBB 2RKNA 3GSHA 1HYPA 1UVBA 1BWOA 2UV8G 1FK5A 2DS2B 3H3AA 1CZ2A 1SM7A 1TMQB 2VKZG 1L6HA 1FK2A 1FK3A 1BIPA 1MIWA 1FK1A 1MZMA 1JTBA 2N2ZA 1AFHA 1UVAA 1W2QA 1RZLA 1BFAA
chains in the Genus database with same CATH topology
1SIYA 1T12A 1MZLA 1B1UA 1TUKA 1LIPA 1BE2A 1GH1A 2LVFA 2ALGA 1BEAA 2B5SA 1HSSA 1BV2A 2MALA 1MIDA 4CVWC 5DOMA 4XUWA 1N89A 2N81A 1FK7A 1FK0A 1FK4A 1S6DA 1PSYA 1UVCA 1FK6A 1PNBB 2RKNA 3GSHA 1HYPA 1UVBA 1BWOA 1FK5A 2DS2B 1CZ2A 1SM7A 1TMQB 1L6HA 1FK2A 1FK3A 1BIPA 1MZMA 1FK1A 1JTBA 2N2ZA 1AFHA 1UVAA 1W2QA 1RZLA 1BFAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SIY A;  1T12 A;  1MZL A;  1B1U A;  1TUK A;  1LIP A;  1BE2 A;  1GH1 A;  2LVF A;  2ALG A;  1BEA A;  2B5S A;  1HSS A;  1BV2 A;  2MAL A;  1MID A;  4CVW C;  5DOM A;  4XUW A;  1N89 A;  2N81 A;  1FK7 A;  1FK0 A;  1FK4 A;  1S6D A;  1PSY A;  1UVC A;  1FK6 A;  1PNB B;  2RKN A;  3GSH A;  1HYP A;  1UVB A;  1BWO A;  1FK5 A;  2DS2 B;  1CZ2 A;  1SM7 A;  1TMQ B;  1L6H A;  1FK2 A;  1FK3 A;  1BIP A;  1MZM A;  1FK1 A;  1JTB A;  2N2Z A;  1AFH A;  1UVA A;  1W2Q A;  1RZL A;  1BFA A; 
#chains in the Genus database with same CATH topology
 1SIY A;  1MIY A;  1MIV A;  1T12 A;  1MZL A;  1B1U A;  1TUK A;  3HMJ G;  1LIP A;  1BE2 A;  1GH1 A;  2LVF A;  2ALG A;  1BEA A;  2B5S A;  1HSS A;  1BV2 A;  2MAL A;  1MID A;  4CVW C;  5DOM A;  4XUW A;  1N89 A;  3H37 A;  2N81 A;  1FK7 A;  1FK0 A;  1FK4 A;  1S6D A;  1PSY A;  1UVC A;  1FK6 A;  1PNB B;  2RKN A;  3GSH A;  1HYP A;  1UVB A;  1BWO A;  2UV8 G;  1FK5 A;  2DS2 B;  3H3A A;  1CZ2 A;  1SM7 A;  1TMQ B;  2VKZ G;  1L6H A;  1FK2 A;  1FK3 A;  1BIP A;  1MIW A;  1FK1 A;  1MZM A;  1JTB A;  2N2Z A;  1AFH A;  1UVA A;  1W2Q A;  1RZL A;  1BFA A; 
#chains in the Genus database with same CATH homology
 1SIY A;  1T12 A;  1MZL A;  1B1U A;  1TUK A;  1LIP A;  1BE2 A;  1GH1 A;  2LVF A;  2ALG A;  1BEA A;  2B5S A;  1HSS A;  1BV2 A;  2MAL A;  1MID A;  4CVW C;  5DOM A;  4XUW A;  1N89 A;  2N81 A;  1FK7 A;  1FK0 A;  1FK4 A;  1S6D A;  1PSY A;  1UVC A;  1FK6 A;  1PNB B;  2RKN A;  3GSH A;  1HYP A;  1UVB A;  1BWO A;  1FK5 A;  2DS2 B;  1CZ2 A;  1SM7 A;  1TMQ B;  1L6H A;  1FK2 A;  1FK3 A;  1BIP A;  1MZM A;  1FK1 A;  1JTB A;  2N2Z A;  1AFH A;  1UVA A;  1W2Q A;  1RZL A;  1BFA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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