2B5UB

Crystal structure of colicin e3 v206c mutant in complex with its immunity protein
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
84
structure length
84
Chain Sequence
b'GLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDYRDGDW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure Of Colicin E3 In Complex With Its Immunity Protein
rcsb
molecule keywords Colicin E3
source organism Escherichia coli
molecule tags Ribosome inhibitor, hydrolase
total genus 20
structure length 84
sequence length 84
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03513 Cloacin_immun Cloacin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.50.20 Alpha Beta Roll Chitinase A; domain 3 Cloacin immunity protein 2b5uB00
3EIPA 2B5UB 1JCHB 1E44A 4UDMA
chains in the Genus database with same CATH superfamily
2ZR6A 1KFWA 1U79A 1UR8A 3FAPA 1FKGA 4JFIA 4HBOA 2PPNA 3WIJA 1FKHA 4DRHA 3GTYX 1JNDA 2B5UB 4TNSA 2QF8A 3B9AA 1A7XA 4WJXA 1FJDA 3KAIA 4U86A 3OA5A 1LL4A 4IQ2A 1FKJA 4ODNA 1FFRA 5HUAA 4DIPA 4LAWA 2PN0A 4IQCA 3CGNA 3RM4A 1JNSA 4ZS6A 4DROA 5D75A 4UDMA 1LL7A 4ODOA 2DSUA 4G2PA 5B8IC 3O5PA 1TFVA 2PPOA 1HJVA 4Z2HA 1HKJA 1HKKA 4ZPVR 1ZBCA 3IHZA 2LPVA 1NSGA 2PV2A 4J4NA 2KO7A 1GRJA 1LG1A 4DT4A 2ESCA 2RUCA 1W1PA 4MPKA 1D7JA 4ZPWR 1E6RA 1W1TA 1HXVA 1OGGA 2F21A 4C02B 4DRIA 3FY1A 4DWSD 2VCDA 2M2AA 5DIVA 2XP6A 2MLXA 2RURA 4R5EA 2MLZA 2AWGA 1W1YA 2Q5AA 5HTGA 5GPRA 4DWSA 3WL0A 1NMVA 1NWUA 3RGCA 4MNMA 1D7HA 1LJYA 2KGJA 1OWQA 3ARWA 3AS2A 2XP5A 3UQAA 4Z2KA 4TW8A 3ARYA 2MPHA 4LGXA 3I6CA 2K8IA 2VN1A 3ALFA 3RMEA 1OGBA 1K9TA 4JFLA 3TDBA 1W9PA 5JH8A 3G6LA 2XP4A 4BF8A 2XPBA 3NI6A 2F23A 4ODRA 3IKDA 3PA7A 4WKAA 1Y0OA 1VF8A 1Q6UA 4IT4A 4MNLA 3EIPA 1GUVA 2LJ4A 4TW7A 3O5IA 3WD3A 1C9HA 2OLHA 1WNOA 1EDQA 1H0GA 3CHEA 1ZCNA 3G6MA 1GPFA 2ZQVA 1CTNA 1F40A 3ARSA 4ODPA 4KR0B 1YW5A 1FD9A 4TW6A 3ARUA 4L72B 3KADA 2FKEA 4QIBA 2IUZA 2PPPA 2ZR5A 3MDYB 2DT3A 2RSEA 3UI4A 2LGOA 2M08A 2DSZA 1ZK6A 1FKKA 3ARVA 3KZ7A 2MF9A 1NWRA 4S3KA 2UZ5A 3H9RB 3JYJA 2DPEA 1ZBVA 4J4OA 3OOBA 1FAPA 1ZL1A 1XRVA 1FKDA 1QZ2A 3PRBA 1YATA 3B7XA 4GIVA 3O5QA 1J4RA 3B8SA 2KFWA 4DZ3A 1E9LA 3RM9A 1F8AB 5HW8A 1E6ZA 3AROA 2KI3A 4U84A 4W9OA 2XP7A 3KAGA 1FKIA 4WKFA 4TYOA 2ZQUA 1ITXA 2G41A 4LAXA 2XP8A 1W9VA 1W26A 5DEZA 4U85A 4Z2GA 1L1PA 3CH9A 5HWCA 2O9OA 4DRPA 1TCOC 4W9PA 5DIUA 4DZ2A 3CHCA 1JCHB 1HJXA 3JXVA 5DITA 1NH6A 4DRQA 3W4RA 1X6NA 1Q1CA 3PRAA 1QPLA 3ALGA 4MGVA 3WD4A 1FKFA 4ML4A 4ODLA 1J6YA 5DF0A 4MAVA 4JFJA 1FKTA 2WLZA 4ODQA 1SR0A 4G50A 4ITZA 5GQBA 4R0XA 1JVWA 3O5FA 1ZU8A 2DG4A 4DRMA 4MNJA 3AS0A 3TC5A 1NWSA 2Y78A 2F2DA 3PRDA 2DSWA 1ROTA 1EIBA 4QZVB 3BMBA 3ARRA 4ODKA 4AY1A 1ROUA 2ETNA 3IK8A 3B9EA 4DWSB 3WD2A 4Z2IA 4ZPTR 4P8WA 2EULA 4URIA 3ARZA 1HKIA 1FFQA 4MSPA 1LG2A 4LAYA 1JNTA 4TX0A 3O5LA 5BXJA 4PTMA 2XP9A 4DH0A 2JZVA 2A3BA 1SYTA 2FAPA 2A3CA 4ODMA 3WD1A 2P4VA 1E6NA 2RUQA 3NTPA 4O2TA 3WQWA 4JFKA 4MNKA 5DO2A 4NZCA 3O5RA 4P8XA 2YBUA 2B31A 2G8ZA 3WQVA 3QOKA 4Z2JA 1P5QA 2DT2A 3FXYA 3JYMA 4IT6A 1FKSA 2DG9A 1H0IA 2WLYA 4DRJA 4DRNA 1ZB5A 1NMWA 2RQSA 3AS3A 2ZQSA 2PV1A 3O5GA 5HWBA 2DSVA 2LKNA 1O6IA 4XAKA 3O5MA 2XP3A 1JNEA 1PBKA 2DT0A 1LL6A 5HBFA 2MNTA 3LUOA 4Z2LA 3KAFA 1M5YA 1HKMA 4HARA 3KAHA 2KE0A 4FAPA 2KR7A 1XHGA 1X6LA 3PR9A 3GU0A 4S3JA 1EQ3A 2D9FA 5HT1A 3AS1A 4W9QA 5HKGA 2ITKA 3WD0A 1FKLA 3KCEA 4FN2A 4L3NA 3NRKA 1W1VA 2OFNA 3CZ8A 1J4HA 3WL1A 1D7IA 2PBCA 4Q7NA 1D6OA 3ODKA 1EHNA 1IX5A 4Q22A 3CHDA 2FDMA 1KT1A 1E44A 1W9UA 4IPXA 1BL4A 4LAVA 4P8VA 3KACA 1WB0A 1Q6IA 2WK2A 4P8UA 1D2KA 2ZR4A 3O5EA 2ZQTA 3UI6A 2A3EA 3TCZA 3ARTA 5GPGA 2IF4A 4HBEA 2YBTA 3CHFA 1J4IA 1E6PA 2A3AA 4NNRA 3UQIA 1R9HA 3UF8A 2M1IA 3O5DA 4QT2A 4WKHA 3WH0A 3UQBA 2N87A 4QT3A 5HW6A 3BXWA 4KQZA 4JFMA 1GOIA 2PV3A 1QPFA 2PI6A 5I98A 1PINA 1RD6A 1LQ0A 2L2SA 2XPAA 3VAWA 1FKRA 3ARQA 3GPKA 3O5OA 5J6EA 4JYSA 1B6CA 3KABA 3ARPA 2AOSA 5HW7A 1UR9A 2WM0A 1HJWA 1Q6HA 3EY6A 2O92A 4WK9A 3RFWA 4DWSC 4N19A 3O5JA 1ZBKA 1NWTA 2F4EA 2DT1A 1N1AA 3IKGA 2DG3A 4W5UA 3RM8A 3UI5A 1BKFA 2MLYA 4MTVA 1ZBWA 3B9DA 4WIWA 3ARXA 3CGMA 1E15A 3AQUA 4DRKA 3WKZA 1KT0A 4GGQA 1EYMA 3O5KA 1WAWA 4NSBA 1FKBA 2RUDA 1T11A
chains in the Genus database with same CATH topology
3EIPA 2B5UB 1JCHB 1E44A 4UDMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EIP A;  2B5U B;  1JCH B;  1E44 A;  4UDM A; 
#chains in the Genus database with same CATH topology
 2ZR6 A;  1KFW A;  1U79 A;  1UR8 A;  3FAP A;  1FKG A;  4JFI A;  4HBO A;  2PPN A;  3WIJ A;  1FKH A;  4DRH A;  3GTY X;  1JND A;  2B5U B;  4TNS A;  2QF8 A;  3B9A A;  1A7X A;  4WJX A;  1FJD A;  3KAI A;  4U86 A;  3OA5 A;  1LL4 A;  4IQ2 A;  1FKJ A;  4ODN A;  1FFR A;  5HUA A;  4DIP A;  4LAW A;  2PN0 A;  4IQC A;  3CGN A;  3RM4 A;  1JNS A;  4ZS6 A;  4DRO A;  5D75 A;  4UDM A;  1LL7 A;  4ODO A;  2DSU A;  4G2P A;  5B8I C;  3O5P A;  1TFV A;  2PPO A;  1HJV A;  4Z2H A;  1HKJ A;  1HKK A;  4ZPV R;  1ZBC A;  3IHZ A;  2LPV A;  1NSG A;  2PV2 A;  4J4N A;  2KO7 A;  1GRJ A;  1LG1 A;  4DT4 A;  2ESC A;  2RUC A;  1W1P A;  4MPK A;  1D7J A;  4ZPW R;  1E6R A;  1W1T A;  1HXV A;  1OGG A;  2F21 A;  4C02 B;  4DRI A;  3FY1 A;  4DWS D;  2VCD A;  2M2A A;  5DIV A;  2XP6 A;  2MLX A;  2RUR A;  4R5E A;  2MLZ A;  2AWG A;  1W1Y A;  2Q5A A;  5HTG A;  5GPR A;  4DWS A;  3WL0 A;  1NMV A;  1NWU A;  3RGC A;  4MNM A;  1D7H A;  1LJY A;  2KGJ A;  1OWQ A;  3ARW A;  3AS2 A;  2XP5 A;  3UQA A;  4Z2K A;  4TW8 A;  3ARY A;  2MPH A;  4LGX A;  3I6C A;  2K8I A;  2VN1 A;  3ALF A;  3RME A;  1OGB A;  1K9T A;  4JFL A;  3TDB A;  1W9P A;  5JH8 A;  3G6L A;  2XP4 A;  4BF8 A;  2XPB A;  3NI6 A;  2F23 A;  4ODR A;  3IKD A;  3PA7 A;  4WKA A;  1Y0O A;  1VF8 A;  1Q6U A;  4IT4 A;  4MNL A;  3EIP A;  1GUV A;  2LJ4 A;  4TW7 A;  3O5I A;  3WD3 A;  1C9H A;  2OLH A;  1WNO A;  1EDQ A;  1H0G A;  3CHE A;  1ZCN A;  3G6M A;  1GPF A;  2ZQV A;  1CTN A;  1F40 A;  3ARS A;  4ODP A;  4KR0 B;  1YW5 A;  1FD9 A;  4TW6 A;  3ARU A;  4L72 B;  3KAD A;  2FKE A;  4QIB A;  2IUZ A;  2PPP A;  2ZR5 A;  3MDY B;  2DT3 A;  2RSE A;  3UI4 A;  2LGO A;  2M08 A;  2DSZ A;  1ZK6 A;  1FKK A;  3ARV A;  3KZ7 A;  2MF9 A;  1NWR A;  4S3K A;  2UZ5 A;  3H9R B;  3JYJ A;  2DPE A;  1ZBV A;  4J4O A;  3OOB A;  1FAP A;  1ZL1 A;  1XRV A;  1FKD A;  1QZ2 A;  3PRB A;  1YAT A;  3B7X A;  4GIV A;  3O5Q A;  1J4R A;  3B8S A;  2KFW A;  4DZ3 A;  1E9L A;  3RM9 A;  1F8A B;  5HW8 A;  1E6Z A;  3ARO A;  2KI3 A;  4U84 A;  4W9O A;  2XP7 A;  3KAG A;  1FKI A;  4WKF A;  4TYO A;  2ZQU A;  1ITX A;  2G41 A;  4LAX A;  2XP8 A;  1W9V A;  1W26 A;  5DEZ A;  4U85 A;  4Z2G A;  1L1P A;  3CH9 A;  5HWC A;  2O9O A;  4DRP A;  1TCO C;  4W9P A;  5DIU A;  4DZ2 A;  3CHC A;  1JCH B;  1HJX A;  3JXV A;  5DIT A;  1NH6 A;  4DRQ A;  3W4R A;  1X6N A;  1Q1C A;  3PRA A;  1QPL A;  3ALG A;  4MGV A;  3WD4 A;  1FKF A;  4ML4 A;  4ODL A;  1J6Y A;  5DF0 A;  4MAV A;  4JFJ A;  1FKT A;  2WLZ A;  4ODQ A;  1SR0 A;  4G50 A;  4ITZ A;  5GQB A;  4R0X A;  1JVW A;  3O5F A;  1ZU8 A;  2DG4 A;  4DRM A;  4MNJ A;  3AS0 A;  3TC5 A;  1NWS A;  2Y78 A;  2F2D A;  3PRD A;  2DSW A;  1ROT A;  1EIB A;  4QZV B;  3BMB A;  3ARR A;  4ODK A;  4AY1 A;  1ROU A;  2ETN A;  3IK8 A;  3B9E A;  4DWS B;  3WD2 A;  4Z2I A;  4ZPT R;  4P8W A;  2EUL A;  4URI A;  3ARZ A;  1HKI A;  1FFQ A;  4MSP A;  1LG2 A;  4LAY A;  1JNT A;  4TX0 A;  3O5L A;  5BXJ A;  4PTM A;  2XP9 A;  4DH0 A;  2JZV A;  2A3B A;  1SYT A;  2FAP A;  2A3C A;  4ODM A;  3WD1 A;  2P4V A;  1E6N A;  2RUQ A;  3NTP A;  4O2T A;  3WQW A;  4JFK A;  4MNK A;  5DO2 A;  4NZC A;  3O5R A;  4P8X A;  2YBU A;  2B31 A;  2G8Z A;  3WQV A;  3QOK A;  4Z2J A;  1P5Q A;  2DT2 A;  3FXY A;  3JYM A;  4IT6 A;  1FKS A;  2DG9 A;  1H0I A;  2WLY A;  4DRJ A;  4DRN A;  1ZB5 A;  1NMW A;  2RQS A;  3AS3 A;  2ZQS A;  2PV1 A;  3O5G A;  5HWB A;  2DSV A;  2LKN A;  1O6I A;  4XAK A;  3O5M A;  2XP3 A;  1JNE A;  1PBK A;  2DT0 A;  1LL6 A;  5HBF A;  2MNT A;  3LUO A;  4Z2L A;  3KAF A;  1M5Y A;  1HKM A;  4HAR A;  3KAH A;  2KE0 A;  4FAP A;  2KR7 A;  1XHG A;  1X6L A;  3PR9 A;  3GU0 A;  4S3J A;  1EQ3 A;  2D9F A;  5HT1 A;  3AS1 A;  4W9Q A;  5HKG A;  2ITK A;  3WD0 A;  1FKL A;  3KCE A;  4FN2 A;  4L3N A;  3NRK A;  1W1V A;  2OFN A;  3CZ8 A;  1J4H A;  3WL1 A;  1D7I A;  2PBC A;  4Q7N A;  1D6O A;  3ODK A;  1EHN A;  1IX5 A;  4Q22 A;  3CHD A;  2FDM A;  1KT1 A;  1E44 A;  1W9U A;  4IPX A;  1BL4 A;  4LAV A;  4P8V A;  3KAC A;  1WB0 A;  1Q6I A;  2WK2 A;  4P8U A;  1D2K A;  2ZR4 A;  3O5E A;  2ZQT A;  3UI6 A;  2A3E A;  3TCZ A;  3ART A;  5GPG A;  2IF4 A;  4HBE A;  2YBT A;  3CHF A;  1J4I A;  1E6P A;  2A3A A;  4NNR A;  3UQI A;  1R9H A;  3UF8 A;  2M1I A;  3O5D A;  4QT2 A;  4WKH A;  3WH0 A;  3UQB A;  2N87 A;  4QT3 A;  5HW6 A;  3BXW A;  4KQZ A;  4JFM A;  1GOI A;  2PV3 A;  1QPF A;  2PI6 A;  5I98 A;  1PIN A;  1RD6 A;  1LQ0 A;  2L2S A;  2XPA A;  3VAW A;  1FKR A;  3ARQ A;  3GPK A;  3O5O A;  5J6E A;  4JYS A;  1B6C A;  3KAB A;  3ARP A;  2AOS A;  5HW7 A;  1UR9 A;  2WM0 A;  1HJW A;  1Q6H A;  3EY6 A;  2O92 A;  4WK9 A;  3RFW A;  4DWS C;  4N19 A;  3O5J A;  1ZBK A;  1NWT A;  2F4E A;  2DT1 A;  1N1A A;  3IKG A;  2DG3 A;  4W5U A;  3RM8 A;  3UI5 A;  1BKF A;  2MLY A;  4MTV A;  1ZBW A;  3B9D A;  4WIW A;  3ARX A;  3CGM A;  1E15 A;  3AQU A;  4DRK A;  3WKZ A;  1KT0 A;  4GGQ A;  1EYM A;  3O5K A;  1WAW A;  4NSB A;  1FKB A;  2RUD A;  1T11 A; 
#chains in the Genus database with same CATH homology
 3EIP A;  2B5U B;  1JCH B;  1E44 A;  4UDM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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