2B5UB

Crystal structure of colicin e3 v206c mutant in complex with its immunity protein
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
84
structure length
84
Chain Sequence
GLKLDLTWFDKSTEDFKGEEYSKDFGDDGSVMESLGVPFKDNVNNGCFDVIAEWVPLLQPYFNHQIDISDNEYFVSFDYRDGDW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome inhibitor, hydrolase
source organism Escherichia coli
publication title Crystal Structure Of Colicin E3 In Complex With Its Immunity Protein
rcsb
molecule keywords Colicin E3
total genus 20
structure length 84
sequence length 84
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03513 Cloacin_immun Cloacin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.50.20 Alpha Beta Roll Chitinase A; domain 3 Cloacin immunity protein 2b5uB00
4UDMA 1JCHB 3EIPA 1E44A 2B5UB
chains in the Genus database with same CATH superfamily
4DRKA 4P8XA 4WIWA 3TDBA 1W26A 2A3EA 4ML4A 2DSUA 3GU0A 2N87A 3RFWA 3RM9A 3WD1A 2F23A 5HKGA 5HWBA 3UI6A 5D75A 1LG2A 1W1TA 1EHNA 5HW6A 1W1VA 1D7JA 1ZBCA 4MNLA 4ZPWR 2LGOA 1NWRA 3O5QA 3CGNA 5J6EA 2KO7A 4QIBA 1NSGA 2UZ5A 4W5UA 1L1PA 1FKGA 3ARVA 1NH6A 1E15A 3AS1A 5HBFA 1A7XA 1H0GA 1W1PA 3PRDA 4GGQA 4NSBA 2XP9A 2WM0A 1WAWA 2Y78A 4ODNA 5JH8A 4NZCA 1J4RA 4TW8A 1XHGA 3B9EA 1FAPA 2RUCA 2B31A 4MNKA 4MNJA 1ROUA 4ODRA 1K9TA 3EIPA 3FAPA 2MF9A 4Q22A 4WKHA 5BXJA 3TCZA 3AS3A 4HBEA 4ODLA 3OA5A 5HW7A 1PBKA 3KAFA 3O5DA 4S3KA 1LL6A 2ITKA 1E6NA 4JFLA 1FKKA 3CHEA 1NWSA 4Q7NA 1M5YA 4TYOA 3IHZA 2DPEA 1OGBA 1FKRA 1W1YA 2DG4A 1JNTA 2KE0A 4DIPA 5GPRA 2DT3A 3VAWA 1JNEA 2ZQUA 1EDQA 4LAWA 1YW5A 1ZL1A 3ARZA 2YBTA 4ODMA 4DRHA 3MDYB 3UQAA 2ESCA 1HJVA 3ARRA 2ZQSA 2F2DA 2RUQA 4ODKA 1U79A 1OGGA 3KAHA 5HT1A 4R5EA 4UDMA 3CHFA 1FKFA 1Q1CA 4G50A 1W9UA 5DIVA 3H9RB 2XPBA 1JNSA 3OOBA 3WQVA 1ZU8A 2QF8A 1E6RA 2RURA 1ZBWA 4U85A 3B9DA 4IT4A 1ZCNA 4W9QA 3RGCA 3O5RA 1GRJA 3O5EA 5GQBA 2F21A 3ARYA 3CH9A 3O5JA 1JNDA 1P5QA 1Q6UA 1IX5A 1EQ3A 3O5KA 4MGVA 1WNOA 3RMEA 3KABA 5GPGA 1JCHB 2F4EA 2O92A 2LJ4A 4W9PA 5DO2A 1HKKA 4J4OA 2DSVA 2KGJA 4ODPA 2G41A 3JYJA 1FKBA 2XP7A 4WK9A 3ARWA 2A3BA 1FKTA 2O9OA 1J4HA 1NMWA 2D9FA 2K8IA 3LUOA 4DWSD 4MNMA 1HKJA 2M1IA 2PN0A 3BXWA 2LPVA 1W9PA 2PBCA 3B8SA 4P8VA 3ARTA 4ODQA 3I6CA 3CZ8A 4Z2HA 2KFWA 4N19A 4FN2A 3NI6A 4U84A 1FFQA 2PV3A 3GTYX 2MLYA 1FKIA 2DSWA 1N1AA 3WKZA 3AS0A 4IT6A 1RD6A 1E6ZA 3KAIA 1ZBKA 1YATA 4DRMA 3CHDA 4TX0A 1SYTA 1QZ2A 3B7XA 4FAPA 2MLZA 1XRVA 5HWCA 4MSPA 1B6CA 4Z2GA 4R0XA 1HKIA 3UQIA 4JFMA 3KACA 1F40A 1ZBVA 2VCDA 3WD3A 4DRJA 2RSEA 4QZVB 3O5PA 1D6OA 3ARPA 3GPKA 2Q5AA 2MNTA 3KAGA 1O6IA 1PINA 3UF8A 4AY1A 3W4RA 4JFKA 2ZQTA 1GUVA 1QPFA 1FKLA 3ALGA 4S3JA 3WH0A 1X6NA 4BF8A 3KCEA 3O5FA 3O5LA 4Z2JA 3PR9A 3TC5A 4L72B 1Q6HA 1E44A 4DRPA 1FJDA 4HBOA 4IQ2A 1EIBA 4O2TA 4U86A 2OLHA 2MLXA 3NRKA 4DRIA 3FY1A 5HTGA 2XP6A 4LAXA 3AS2A 1FKDA 1GOIA 1UR9A 1D2KA 3WL1A 3PRAA 1E6PA 4DZ3A 1FFRA 1CTNA 2XP4A 2WK2A 1W9VA 1HXVA 1FD9A 2ZR4A 4LAVA 4DROA 3WD0A 2M08A 4ZPTR 1ZB5A 1FKHA 4W9OA 2DG9A 1NMVA 5DITA 3WD2A 2DT0A 1F8AB 5HUAA 4JFJA 3G6LA 2DT1A 2MPHA 4KQZA 1LG1A 4C02B 4WKAA 1WB0A 1KFWA 3ARQA 2FKEA 1TFVA 5I98A 5DF0A 4URIA 2RQSA 4P8UA 4LAYA 4PTMA 3QOKA 4TW6A 1H0IA 3WL0A 3ARXA 4IPXA 2JZVA 1LQ0A 4DWSB 2M2AA 5B8IC 3ARSA 2PI6A 4ZPVR 4XAKA 4LGXA 2AWGA 5DIUA 2XP8A 2OFNA 3B9AA 4DH0A 4DRQA 2B5UB 4WKFA 1BL4A 3IKDA 2ZR6A 2G8ZA 1NWUA 4QT2A 1QPLA 4ODOA 2P4VA 1HJWA 3RM8A 2XP3A 4MPKA 4DRNA 1SR0A 4DWSC 2IUZA 4J4NA 4NNRA 2ZQVA 4IQCA 1T11A 3UQBA 1TCOC 4JYSA 3CHCA 3ARUA 2EULA 3O5IA 1J4IA 1VF8A 2XPAA 1C9HA 3NTPA 1HJXA 3AROA 1D7IA 4GIVA 4ZS6A 1ITXA 2DSZA 3ODKA 2ETNA 2KI3A 3RM4A 2PPOA 4MTVA 3G6MA 2AOSA 1ZK6A 2PV1A 1E9LA 5DEZA 2YBUA 3O5GA 2XP5A 3AQUA 1J6YA 3WQWA 2KR7A 3IKGA 4Z2KA 2A3AA 4KR0B 1FKJA 2PPPA 1JVWA 2PV2A 1NWTA 2WLYA 2L2SA 3KZ7A 3CGMA 3O5MA 4G2PA 4MAVA 3PA7A 1X6LA 4DT4A 1KT0A 3BMBA 3IK8A 1Y0OA 5HW8A 4DWSA 1HKMA 4L3NA 4DZ2A 1D7HA 1LJYA 1EYMA 4HARA 4Z2LA 2IF4A 4ITZA 2ZR5A 3FXYA 1R9HA 1FKSA 4QT3A 2WLZA 1UR8A 2VN1A 4WJXA 2FDMA 1ROTA 2RUDA 4Z2IA 3JXVA 3JYMA 4TNSA 3EY6A 1KT1A 1LL7A 4TW7A 3KADA 1Q6IA 3WIJA 3PRBA 4JFIA 1GPFA 2FAPA 1BKFA 1OWQA 3ALFA 2LKNA 3O5OA 2DG3A 2A3CA 4P8WA 2PPNA 3UI4A 1LL4A 3UI5A 3WD4A 2DT2A
chains in the Genus database with same CATH topology
4UDMA 1JCHB 3EIPA 1E44A 2B5UB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UDM A;  1JCH B;  3EIP A;  1E44 A;  2B5U B; 
#chains in the Genus database with same CATH topology
 4DRK A;  4P8X A;  4WIW A;  3TDB A;  1W26 A;  2A3E A;  4ML4 A;  2DSU A;  3GU0 A;  2N87 A;  3RFW A;  3RM9 A;  3WD1 A;  2F23 A;  5HKG A;  5HWB A;  3UI6 A;  5D75 A;  1LG2 A;  1W1T A;  1EHN A;  5HW6 A;  1W1V A;  1D7J A;  1ZBC A;  4MNL A;  4ZPW R;  2LGO A;  1NWR A;  3O5Q A;  3CGN A;  5J6E A;  2KO7 A;  4QIB A;  1NSG A;  2UZ5 A;  4W5U A;  1L1P A;  1FKG A;  3ARV A;  1NH6 A;  1E15 A;  3AS1 A;  5HBF A;  1A7X A;  1H0G A;  1W1P A;  3PRD A;  4GGQ A;  4NSB A;  2XP9 A;  2WM0 A;  1WAW A;  2Y78 A;  4ODN A;  5JH8 A;  4NZC A;  1J4R A;  4TW8 A;  1XHG A;  3B9E A;  1FAP A;  2RUC A;  2B31 A;  4MNK A;  4MNJ A;  1ROU A;  4ODR A;  1K9T A;  3EIP A;  3FAP A;  2MF9 A;  4Q22 A;  4WKH A;  5BXJ A;  3TCZ A;  3AS3 A;  4HBE A;  4ODL A;  3OA5 A;  5HW7 A;  1PBK A;  3KAF A;  3O5D A;  4S3K A;  1LL6 A;  2ITK A;  1E6N A;  4JFL A;  1FKK A;  3CHE A;  1NWS A;  4Q7N A;  1M5Y A;  4TYO A;  3IHZ A;  2DPE A;  1OGB A;  1FKR A;  1W1Y A;  2DG4 A;  1JNT A;  2KE0 A;  4DIP A;  5GPR A;  2DT3 A;  3VAW A;  1JNE A;  2ZQU A;  1EDQ A;  4LAW A;  1YW5 A;  1ZL1 A;  3ARZ A;  2YBT A;  4ODM A;  4DRH A;  3MDY B;  3UQA A;  2ESC A;  1HJV A;  3ARR A;  2ZQS A;  2F2D A;  2RUQ A;  4ODK A;  1U79 A;  1OGG A;  3KAH A;  5HT1 A;  4R5E A;  4UDM A;  3CHF A;  1FKF A;  1Q1C A;  4G50 A;  1W9U A;  5DIV A;  3H9R B;  2XPB A;  1JNS A;  3OOB A;  3WQV A;  1ZU8 A;  2QF8 A;  1E6R A;  2RUR A;  1ZBW A;  4U85 A;  3B9D A;  4IT4 A;  1ZCN A;  4W9Q A;  3RGC A;  3O5R A;  1GRJ A;  3O5E A;  5GQB A;  2F21 A;  3ARY A;  3CH9 A;  3O5J A;  1JND A;  1P5Q A;  1Q6U A;  1IX5 A;  1EQ3 A;  3O5K A;  4MGV A;  1WNO A;  3RME A;  3KAB A;  5GPG A;  1JCH B;  2F4E A;  2O92 A;  2LJ4 A;  4W9P A;  5DO2 A;  1HKK A;  4J4O A;  2DSV A;  2KGJ A;  4ODP A;  2G41 A;  3JYJ A;  1FKB A;  2XP7 A;  4WK9 A;  3ARW A;  2A3B A;  1FKT A;  2O9O A;  1J4H A;  1NMW A;  2D9F A;  2K8I A;  3LUO A;  4DWS D;  4MNM A;  1HKJ A;  2M1I A;  2PN0 A;  3BXW A;  2LPV A;  1W9P A;  2PBC A;  3B8S A;  4P8V A;  3ART A;  4ODQ A;  3I6C A;  3CZ8 A;  4Z2H A;  2KFW A;  4N19 A;  4FN2 A;  3NI6 A;  4U84 A;  1FFQ A;  2PV3 A;  3GTY X;  2MLY A;  1FKI A;  2DSW A;  1N1A A;  3WKZ A;  3AS0 A;  4IT6 A;  1RD6 A;  1E6Z A;  3KAI A;  1ZBK A;  1YAT A;  4DRM A;  3CHD A;  4TX0 A;  1SYT A;  1QZ2 A;  3B7X A;  4FAP A;  2MLZ A;  1XRV A;  5HWC A;  4MSP A;  1B6C A;  4Z2G A;  4R0X A;  1HKI A;  3UQI A;  4JFM A;  3KAC A;  1F40 A;  1ZBV A;  2VCD A;  3WD3 A;  4DRJ A;  2RSE A;  4QZV B;  3O5P A;  1D6O A;  3ARP A;  3GPK A;  2Q5A A;  2MNT A;  3KAG A;  1O6I A;  1PIN A;  3UF8 A;  4AY1 A;  3W4R A;  4JFK A;  2ZQT A;  1GUV A;  1QPF A;  1FKL A;  3ALG A;  4S3J A;  3WH0 A;  1X6N A;  4BF8 A;  3KCE A;  3O5F A;  3O5L A;  4Z2J A;  3PR9 A;  3TC5 A;  4L72 B;  1Q6H A;  1E44 A;  4DRP A;  1FJD A;  4HBO A;  4IQ2 A;  1EIB A;  4O2T A;  4U86 A;  2OLH A;  2MLX A;  3NRK A;  4DRI A;  3FY1 A;  5HTG A;  2XP6 A;  4LAX A;  3AS2 A;  1FKD A;  1GOI A;  1UR9 A;  1D2K A;  3WL1 A;  3PRA A;  1E6P A;  4DZ3 A;  1FFR A;  1CTN A;  2XP4 A;  2WK2 A;  1W9V A;  1HXV A;  1FD9 A;  2ZR4 A;  4LAV A;  4DRO A;  3WD0 A;  2M08 A;  4ZPT R;  1ZB5 A;  1FKH A;  4W9O A;  2DG9 A;  1NMV A;  5DIT A;  3WD2 A;  2DT0 A;  1F8A B;  5HUA A;  4JFJ A;  3G6L A;  2DT1 A;  2MPH A;  4KQZ A;  1LG1 A;  4C02 B;  4WKA A;  1WB0 A;  1KFW A;  3ARQ A;  2FKE A;  1TFV A;  5I98 A;  5DF0 A;  4URI A;  2RQS A;  4P8U A;  4LAY A;  4PTM A;  3QOK A;  4TW6 A;  1H0I A;  3WL0 A;  3ARX A;  4IPX A;  2JZV A;  1LQ0 A;  4DWS B;  2M2A A;  5B8I C;  3ARS A;  2PI6 A;  4ZPV R;  4XAK A;  4LGX A;  2AWG A;  5DIU A;  2XP8 A;  2OFN A;  3B9A A;  4DH0 A;  4DRQ A;  2B5U B;  4WKF A;  1BL4 A;  3IKD A;  2ZR6 A;  2G8Z A;  1NWU A;  4QT2 A;  1QPL A;  4ODO A;  2P4V A;  1HJW A;  3RM8 A;  2XP3 A;  4MPK A;  4DRN A;  1SR0 A;  4DWS C;  2IUZ A;  4J4N A;  4NNR A;  2ZQV A;  4IQC A;  1T11 A;  3UQB A;  1TCO C;  4JYS A;  3CHC A;  3ARU A;  2EUL A;  3O5I A;  1J4I A;  1VF8 A;  2XPA A;  1C9H A;  3NTP A;  1HJX A;  3ARO A;  1D7I A;  4GIV A;  4ZS6 A;  1ITX A;  2DSZ A;  3ODK A;  2ETN A;  2KI3 A;  3RM4 A;  2PPO A;  4MTV A;  3G6M A;  2AOS A;  1ZK6 A;  2PV1 A;  1E9L A;  5DEZ A;  2YBU A;  3O5G A;  2XP5 A;  3AQU A;  1J6Y A;  3WQW A;  2KR7 A;  3IKG A;  4Z2K A;  2A3A A;  4KR0 B;  1FKJ A;  2PPP A;  1JVW A;  2PV2 A;  1NWT A;  2WLY A;  2L2S A;  3KZ7 A;  3CGM A;  3O5M A;  4G2P A;  4MAV A;  3PA7 A;  1X6L A;  4DT4 A;  1KT0 A;  3BMB A;  3IK8 A;  1Y0O A;  5HW8 A;  4DWS A;  1HKM A;  4L3N A;  4DZ2 A;  1D7H A;  1LJY A;  1EYM A;  4HAR A;  4Z2L A;  2IF4 A;  4ITZ A;  2ZR5 A;  3FXY A;  1R9H A;  1FKS A;  4QT3 A;  2WLZ A;  1UR8 A;  2VN1 A;  4WJX A;  2FDM A;  1ROT A;  2RUD A;  4Z2I A;  3JXV A;  3JYM A;  4TNS A;  3EY6 A;  1KT1 A;  1LL7 A;  4TW7 A;  3KAD A;  1Q6I A;  3WIJ A;  3PRB A;  4JFI A;  1GPF A;  2FAP A;  1BKF A;  1OWQ A;  3ALF A;  2LKN A;  3O5O A;  2DG3 A;  2A3C A;  4P8W A;  2PPN A;  3UI4 A;  1LL4 A;  3UI5 A;  3WD4 A;  2DT2 A; 
#chains in the Genus database with same CATH homology
 4UDM A;  1JCH B;  3EIP A;  1E44 A;  2B5U B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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