2B63D

Complete rna polymerase ii-rna inhibitor complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
218
structure length
177
Chain Sequence
STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs
pubmed doi rcsb
molecule keywords 31-MER
molecule tags Transferase/rna
source organism Saccharomyces cerevisiae
total genus 39
structure length 177
sequence length 218
ec nomenclature
pdb deposition date 2005-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 2b63D02
2JA8D 4BBSD 4A3FD 5IYCD 3FKID 4A3ID 2VUMD 3H3VE 3HOUD 4BY7D 4A3DD 4BY1D 2JA6D 5IP9D 2R7ZD 3HOWD 4A3LD 3PO2D 4A3GD 3AYHA 5IP7D 5C3ED 4A3KD 5IYDD 2JA7D 2B63D 3HOZD 1Y14A 2JA5D 4A3ED 2R93D 5C4XD 4A3MD 4BBRD 5C44D 5FLMD 3HOYD 3I4MD 1Y1VD 5IYBD 4A3BD 4A3JD 4A93D 4BXXD 2R92D 1Y1WD 3PO3D 1WCMD 3HOXD 3I4ND 2C35A 3H0GD 3HOVD 4A3CD
chains in the Genus database with same CATH superfamily
1CD9A 1IK0A 2Q7NB 3NCBA 2E9WC 1IRLA 2B90A 1Z92A 4D2BA 1PVHB 4LDSA 2D9QA 4DKFA 3DLQI 3PIWA 1HIKA 3UEZE 2B91A 5EQHA 3I4ND 1GNCA 4A3CD 1EERA 1IARA 2JA8D 4CNIC 4IKVA 3UF5A 1IL6A 4YBQA 1PY2A 4A3LD 3G9VB 4ZYRA 4A3KD 1IJZA 1Y14A 1RFBA 3EW3A 2GMFA 3SE3B 3DI2A 1ALUA 3INKC 1SCFA 1Y1VD 2CYKA 5D58A 4NKQC 3HOXD 1EXZA 4NEMA 1J7VL 2KZ1A 4BBSD 2XUTA 5D71A 3B5KA 1LQSL 3NCFA 1YKBA 2B8YA 1INRA 5KNHI 5FHXA 5TS9A 3DUHC 1M4BA 2ILKA 4TPHA 3LB6B 5FLMD 3I4MD 4BXXD 4IKWA 1WCMD 2C35A 2Z3QA 4YB9D 5A2NA 5D70A 3FKID 4A3ID 1HZIA 1BGDA 3AYHA 1HGUA 1BBNA 5FUCA 2L3OA 4NN6A 1CSGA 4XNJA 1HWHA 3HHRA 2HYMB 3NCEA 3EJJA 1CN4C 1RW5A 2H24A 4NEJA 4A3FD 3HOUD 4JA3A 1BP3A 2R7ZD 4LRLA 3PO2D 1BGEA 2JA5D 2LAGA 3LB6A 5L6YC 3SE4B 2B8UA 2D48A 1BUYA 4WRLB 4DKCA 4A3JD 4A93D 4D2DA 1Z7CA 3L5WI 3G6DA 1CNT1 1HWGA 4A3GD 4IU8A 1AX8A 4EXPA 1AU1A 4GBZA 1PV7A 3BPOA 4PYPA 1LKIA 4XNIA 4I77Z 2XQBA 3BPLA 3IRHA 4NN7A 4W6VA 4GRWA 4A3ED 4NN5A 1BCNA 5D22A 4ZW9A 4IKZA 1ITMA 2Z3RA 2Q98A 1PV6A 5IYBD 3PIVA 3Q1SI 2ERJD 4GS7A 3OQ3A 1HIJA 4Z5RD 4J4LC 1M4CA 3D87A 5IP9D 3QWRB 3NCCA 1AXIA 1D9GA 3DI3A 1VLKA 1A22A 1M49A 5D6KA 4U4WA 1PW6A 2CFQA 2INTA 2VUMD 3H3VE 2IL6A 2CFPA 4A3DD 4YDYI 3HOWD 4TPJA 1PGRA 2JA7D 1ITFA 1EMRA 1I1RB 3QB1A 1Y6NL 4JREA 5C65A 1EVSA 4FA8E 3N0PA 2Y5YA 4UVMA 2B8XA 4TPGA 2JA6D 5IYDD 4QIQA 3D85C 2B5IA 3WCYI 1HUWA 1M4AA 1M4RA 1RCBA 4DKEA 1F45B 4YPGC 4GC0A 1D9CA 4APSA 1Y6ML 5C7XA 4Q65A 3UF2A 5IYCD 3QAZA 2OQPA 1V7MV 3QT2C 4OH3A 5C3ED 3L5XA 1LK3A 1NBPA 4JR9A 4RS1A 1FG9A 3S9DA 3HHCA 1FYHA 4IKYA 4J05A 4PS4A 4U4TA 1M47A 3UX9A 1Y6KL 3D48P 1ITIA 4BY1D 2O26A 4IKXA 3O7PA 3BPNA 1P9MB 3OG6A 1KF9A 4ZWBA 4X51A 3NPZA 1GA3A 2B8ZA 3HOVD 3DGCL 4BY7D 1JLIA 3TGXB 4NI7A 1N1FA 2B63D 1B5LA 4A3MD 1HULA 4BBRD 1ITLA 5E4EA 4A3BD 1Y1WD 3PO3D 1V7NV 1ETEA 4EXNA 5GXBA 2R93D 1PW4A 1EKUA 3QB7A 4DKDA 4U4VA 4LEPA 3HOZD 3VA2A 1RHGA 3O7QA 4DOHA 3N06A 3HMXB 3H0GD 4D2CA 1F6FA 4MHLA 1A7MA 2LMSA 2L3YA 1BGCA 4ZF7A 5IP7D 3OG4A 5C4XD 1QVNA 4GBYA 5EQGA 2O6IA 5C44D 5LQBA 2O27A 1CYLA 3MZGA 2R92D 2Q14A 1M48A 5EQIA 4OAAA 3BESL 5D28B 4O9HA 1WU3I 4YQXA 3WDOA 5D72A 4IU9A 4NI9A 3HOYD 5A2OA 2V8NA 4ZWCA 4ZS7A 5D59A 4O6KA 2PSMA 4YUEC 1ILKA
chains in the Genus database with same CATH topology
2H24A 2INTA 3DGCL 4NEJA 1CD9A 4A3FD 2VUMD 3H3VE 2Q7NB 3HOUD 4BY7D 2IL6A 1BP3A 1IK0A 4A3DD 4YDYI 1JLIA 2R7ZD 3NCBA 2E9WC 1IRLA 3HOWD 4LRLA 3TGXB 3PO2D 4NI7A 1PGRA 1BGEA 1N1FA 2B90A 1Z92A 2JA7D 1ITFA 1PVHB 2B63D 1EMRA 2JA5D 1I1RB 2LAGA 1B5LA 4A3MD 2D9QA 1HULA 3LB6A 3QB1A 1Y6NL 4BBRD 4DKFA 3DLQI 5L6YC 3SE4B 2B8UA 2D48A 1BUYA 4WRLB 4DKCA 1ITLA 5E4EA 4A3BD 4A3JD 3PIWA 4A93D 1HIKA 1Y1WD 3PO3D 1V7NV 1EVSA 3UEZE 4FA8E 1ETEA 3N0PA 4EXNA 2B91A 3I4ND 1GNCA 1Z7CA 4A3CD 1EERA 1IARA 3L5WI 4CNIC 2JA8D 2B8XA 3G6DA 2R93D 1CNT1 1EKUA 3UF5A 1HWGA 1IL6A 3QB7A 2JA6D 1PY2A 4A3LD 4A3GD 3G9VB 4DKDA 4A3KD 5IYDD 1IJZA 3HOZD 1Y14A 3D85C 2B5IA 1AX8A 1RFBA 3VA2A 3EW3A 3WCYI 2GMFA 1HUWA 1M4AA 3SE3B 1M4RA 3DI2A 1RHGA 1ALUA 1RCBA 3INKC 4DOHA 4EXPA 1SCFA 1Y1VD 3N06A 2CYKA 1F45B 4YPGC 4DKEA 1D9CA 1AU1A 1Y6ML 1EXZA 3HMXB 4NEMA 4NKQC 5C7XA 3HOXD 3H0GD 1J7VL 2KZ1A 3BPOA 3UF2A 4BBSD 3QAZA 2OQPA 5D71A 3B5KA 1LQSL 5IYCD 3NCFA 1F6FA 1V7MV 4MHLA 1A7MA 1YKBA 3QT2C 1LKIA 2B8YA 2LMSA 4I77Z 2L3YA 1BGCA 1INRA 2XQBA 3BPLA 3IRHA 5FHXA 4ZF7A 5KNHI 4NN7A 5IP7D 5C3ED 5TS9A 3OG4A 4GRWA 3DUHC 1M4BA 2ILKA 4A3ED 5C4XD 4NN5A 3L5XA 1QVNA 5D22A 1BCNA 1LK3A 3LB6B 1ITMA 2O6IA 2Z3RA 5FLMD 1NBPA 5C44D 5LQBA 2O27A 3I4MD 1CYLA 2Q98A 4RS1A 5IYBD 1FG9A 3MZGA 3HHCA 3S9DA 3PIVA 2R92D 1FYHA 4BXXD 3Q1SI 4PS4A 2ERJD 1WCMD 1M47A 4GS7A 2Q14A 1M48A 2C35A 3UX9A 3OQ3A 1ILKA 1Y6KL 1HIJA 2Z3QA 3D48P 3BESL 4Z5RD 5D28B 1ITIA 4J4LC 3FKID 5D70A 4A3ID 4O9HA 1WU3I 1M4CA 1HZIA 4YQXA 4BY1D 3D87A 5IP9D 1BGDA 3AYHA 3QWRB 1HGUA 1BBNA 3NCCA 1AXIA 5D72A 5FUCA 2O26A 1D9GA 2L3OA 3DI3A 1VLKA 3BPNA 4NI9A 1P9MB 1A22A 3OG6A 1KF9A 4NN6A 3HOYD 1CSGA 1M49A 4ZS7A 1HWHA 4X51A 3HHRA 3NPZA 2HYMB 3NCEA 1GA3A 3EJJA 1PW6A 1CN4C 2B8ZA 4O6KA 2PSMA 4YUEC 3HOVD 1RW5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA8 D;  4BBS D;  4A3F D;  5IYC D;  3FKI D;  4A3I D;  2VUM D;  3H3V E;  3HOU D;  4BY7 D;  4A3D D;  4BY1 D;  2JA6 D;  5IP9 D;  2R7Z D;  3HOW D;  4A3L D;  3PO2 D;  4A3G D;  3AYH A;  5IP7 D;  5C3E D;  4A3K D;  5IYD D;  2JA7 D;  2B63 D;  3HOZ D;  1Y14 A;  2JA5 D;  4A3E D;  2R93 D;  5C4X D;  4A3M D;  4BBR D;  5C44 D;  5FLM D;  3HOY D;  3I4M D;  1Y1V D;  5IYB D;  4A3B D;  4A3J D;  4A93 D;  4BXX D;  2R92 D;  1Y1W D;  3PO3 D;  1WCM D;  3HOX D;  3I4N D;  2C35 A;  3H0G D;  3HOV D;  4A3C D; 
#chains in the Genus database with same CATH topology
 1CD9 A;  1IK0 A;  2Q7N B;  3NCB A;  2E9W C;  1IRL A;  2B90 A;  1Z92 A;  4D2B A;  1PVH B;  4LDS A;  2D9Q A;  4DKF A;  3DLQ I;  3PIW A;  1HIK A;  3UEZ E;  2B91 A;  5EQH A;  3I4N D;  1GNC A;  4A3C D;  1EER A;  1IAR A;  2JA8 D;  4CNI C;  4IKV A;  3UF5 A;  1IL6 A;  4YBQ A;  1PY2 A;  4A3L D;  3G9V B;  4ZYR A;  4A3K D;  1IJZ A;  1Y14 A;  1RFB A;  3EW3 A;  2GMF A;  3SE3 B;  3DI2 A;  1ALU A;  3INK C;  1SCF A;  1Y1V D;  2CYK A;  5D58 A;  4NKQ C;  3HOX D;  1EXZ A;  4NEM A;  1J7V L;  2KZ1 A;  4BBS D;  2XUT A;  5D71 A;  3B5K A;  1LQS L;  3NCF A;  1YKB A;  2B8Y A;  1INR A;  5KNH I;  5FHX A;  5TS9 A;  3DUH C;  1M4B A;  2ILK A;  4TPH A;  3LB6 B;  5FLM D;  3I4M D;  4BXX D;  4IKW A;  1WCM D;  2C35 A;  2Z3Q A;  4YB9 D;  5A2N A;  5D70 A;  3FKI D;  4A3I D;  1HZI A;  1BGD A;  3AYH A;  1HGU A;  1BBN A;  5FUC A;  2L3O A;  4NN6 A;  1CSG A;  4XNJ A;  1HWH A;  3HHR A;  2HYM B;  3NCE A;  3EJJ A;  1CN4 C;  1RW5 A;  2H24 A;  4NEJ A;  4A3F D;  3HOU D;  4JA3 A;  1BP3 A;  2R7Z D;  4LRL A;  3PO2 D;  1BGE A;  2JA5 D;  2LAG A;  3LB6 A;  5L6Y C;  3SE4 B;  2B8U A;  2D48 A;  1BUY A;  4WRL B;  4DKC A;  4A3J D;  4A93 D;  4D2D A;  1Z7C A;  3L5W I;  3G6D A;  1CNT 1;  1HWG A;  4A3G D;  4IU8 A;  1AX8 A;  4EXP A;  1AU1 A;  4GBZ A;  1PV7 A;  3BPO A;  4PYP A;  1LKI A;  4XNI A;  4I77 Z;  2XQB A;  3BPL A;  3IRH A;  4NN7 A;  4W6V A;  4GRW A;  4A3E D;  4NN5 A;  1BCN A;  5D22 A;  4ZW9 A;  4IKZ A;  1ITM A;  2Z3R A;  2Q98 A;  1PV6 A;  5IYB D;  3PIV A;  3Q1S I;  2ERJ D;  4GS7 A;  3OQ3 A;  1HIJ A;  4Z5R D;  4J4L C;  1M4C A;  3D87 A;  5IP9 D;  3QWR B;  3NCC A;  1AXI A;  1D9G A;  3DI3 A;  1VLK A;  1A22 A;  1M49 A;  5D6K A;  4U4W A;  1PW6 A;  2CFQ A;  2INT A;  2VUM D;  3H3V E;  2IL6 A;  2CFP A;  4A3D D;  4YDY I;  3HOW D;  4TPJ A;  1PGR A;  2JA7 D;  1ITF A;  1EMR A;  1I1R B;  3QB1 A;  1Y6N L;  4JRE A;  5C65 A;  1EVS A;  4FA8 E;  3N0P A;  2Y5Y A;  4UVM A;  2B8X A;  4TPG A;  2JA6 D;  5IYD D;  4QIQ A;  3D85 C;  2B5I A;  3WCY I;  1HUW A;  1M4A A;  1M4R A;  1RCB A;  4DKE A;  1F45 B;  4YPG C;  4GC0 A;  1D9C A;  4APS A;  1Y6M L;  5C7X A;  4Q65 A;  3UF2 A;  5IYC D;  3QAZ A;  2OQP A;  1V7M V;  3QT2 C;  4OH3 A;  5C3E D;  3L5X A;  1LK3 A;  1NBP A;  4JR9 A;  4RS1 A;  1FG9 A;  3S9D A;  3HHC A;  1FYH A;  4IKY A;  4J05 A;  4PS4 A;  4U4T A;  1M47 A;  3UX9 A;  1Y6K L;  3D48 P;  1ITI A;  4BY1 D;  2O26 A;  4IKX A;  3O7P A;  3BPN A;  1P9M B;  3OG6 A;  1KF9 A;  4ZWB A;  4X51 A;  3NPZ A;  1GA3 A;  2B8Z A;  3HOV D;  3DGC L;  4BY7 D;  1JLI A;  3TGX B;  4NI7 A;  1N1F A;  2B63 D;  1B5L A;  4A3M D;  1HUL A;  4BBR D;  1ITL A;  5E4E A;  4A3B D;  1Y1W D;  3PO3 D;  1V7N V;  1ETE A;  4EXN A;  5GXB A;  2R93 D;  1PW4 A;  1EKU A;  3QB7 A;  4DKD A;  4U4V A;  4LEP A;  3HOZ D;  3VA2 A;  1RHG A;  3O7Q A;  4DOH A;  3N06 A;  3HMX B;  3H0G D;  4D2C A;  1F6F A;  4MHL A;  1A7M A;  2LMS A;  2L3Y A;  1BGC A;  4ZF7 A;  5IP7 D;  3OG4 A;  5C4X D;  1QVN A;  4GBY A;  5EQG A;  2O6I A;  5C44 D;  5LQB A;  2O27 A;  1CYL A;  3MZG A;  2R92 D;  2Q14 A;  1M48 A;  5EQI A;  4OAA A;  3BES L;  5D28 B;  4O9H A;  1WU3 I;  4YQX A;  3WDO A;  5D72 A;  4IU9 A;  4NI9 A;  3HOY D;  5A2O A;  2V8N A;  4ZWC A;  4ZS7 A;  5D59 A;  4O6K A;  2PSM A;  4YUE C;  1ILK A; 
#chains in the Genus database with same CATH homology
 2H24 A;  2INT A;  3DGC L;  4NEJ A;  1CD9 A;  4A3F D;  2VUM D;  3H3V E;  2Q7N B;  3HOU D;  4BY7 D;  2IL6 A;  1BP3 A;  1IK0 A;  4A3D D;  4YDY I;  1JLI A;  2R7Z D;  3NCB A;  2E9W C;  1IRL A;  3HOW D;  4LRL A;  3TGX B;  3PO2 D;  4NI7 A;  1PGR A;  1BGE A;  1N1F A;  2B90 A;  1Z92 A;  2JA7 D;  1ITF A;  1PVH B;  2B63 D;  1EMR A;  2JA5 D;  1I1R B;  2LAG A;  1B5L A;  4A3M D;  2D9Q A;  1HUL A;  3LB6 A;  3QB1 A;  1Y6N L;  4BBR D;  4DKF A;  3DLQ I;  5L6Y C;  3SE4 B;  2B8U A;  2D48 A;  1BUY A;  4WRL B;  4DKC A;  1ITL A;  5E4E A;  4A3B D;  4A3J D;  3PIW A;  4A93 D;  1HIK A;  1Y1W D;  3PO3 D;  1V7N V;  1EVS A;  3UEZ E;  4FA8 E;  1ETE A;  3N0P A;  4EXN A;  2B91 A;  3I4N D;  1GNC A;  1Z7C A;  4A3C D;  1EER A;  1IAR A;  3L5W I;  4CNI C;  2JA8 D;  2B8X A;  3G6D A;  2R93 D;  1CNT 1;  1EKU A;  3UF5 A;  1HWG A;  1IL6 A;  3QB7 A;  2JA6 D;  1PY2 A;  4A3L D;  4A3G D;  3G9V B;  4DKD A;  4A3K D;  5IYD D;  1IJZ A;  3HOZ D;  1Y14 A;  3D85 C;  2B5I A;  1AX8 A;  1RFB A;  3VA2 A;  3EW3 A;  3WCY I;  2GMF A;  1HUW A;  1M4A A;  3SE3 B;  1M4R A;  3DI2 A;  1RHG A;  1ALU A;  1RCB A;  3INK C;  4DOH A;  4EXP A;  1SCF A;  1Y1V D;  3N06 A;  2CYK A;  1F45 B;  4YPG C;  4DKE A;  1D9C A;  1AU1 A;  1Y6M L;  1EXZ A;  3HMX B;  4NEM A;  4NKQ C;  5C7X A;  3HOX D;  3H0G D;  1J7V L;  2KZ1 A;  3BPO A;  3UF2 A;  4BBS D;  3QAZ A;  2OQP A;  5D71 A;  3B5K A;  1LQS L;  5IYC D;  3NCF A;  1F6F A;  1V7M V;  4MHL A;  1A7M A;  1YKB A;  3QT2 C;  1LKI A;  2B8Y A;  2LMS A;  4I77 Z;  2L3Y A;  1BGC A;  1INR A;  2XQB A;  3BPL A;  3IRH A;  5FHX A;  4ZF7 A;  5KNH I;  4NN7 A;  5IP7 D;  5C3E D;  5TS9 A;  3OG4 A;  4GRW A;  3DUH C;  1M4B A;  2ILK A;  4A3E D;  5C4X D;  4NN5 A;  3L5X A;  1QVN A;  5D22 A;  1BCN A;  1LK3 A;  3LB6 B;  1ITM A;  2O6I A;  2Z3R A;  5FLM D;  1NBP A;  5C44 D;  5LQB A;  2O27 A;  3I4M D;  1CYL A;  2Q98 A;  4RS1 A;  5IYB D;  1FG9 A;  3MZG A;  3HHC A;  3S9D A;  3PIV A;  2R92 D;  1FYH A;  4BXX D;  3Q1S I;  4PS4 A;  2ERJ D;  1WCM D;  1M47 A;  4GS7 A;  2Q14 A;  1M48 A;  2C35 A;  3UX9 A;  3OQ3 A;  1ILK A;  1Y6K L;  1HIJ A;  2Z3Q A;  3D48 P;  3BES L;  4Z5R D;  5D28 B;  1ITI A;  4J4L C;  3FKI D;  5D70 A;  4A3I D;  4O9H A;  1WU3 I;  1M4C A;  1HZI A;  4YQX A;  4BY1 D;  3D87 A;  5IP9 D;  1BGD A;  3AYH A;  3QWR B;  1HGU A;  1BBN A;  3NCC A;  1AXI A;  5D72 A;  5FUC A;  2O26 A;  1D9G A;  2L3O A;  3DI3 A;  1VLK A;  3BPN A;  4NI9 A;  1P9M B;  1A22 A;  3OG6 A;  1KF9 A;  4NN6 A;  3HOY D;  1CSG A;  1M49 A;  4ZS7 A;  1HWH A;  4X51 A;  3HHR A;  3NPZ A;  2HYM B;  3NCE A;  1GA3 A;  3EJJ A;  1PW6 A;  1CN4 C;  2B8Z A;  4O6K A;  2PSM A;  4YUE C;  3HOV D;  1RW5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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