2BB2A

X-ray analysis of beta b2-crystallin and evolution of oligomeric lens proteins
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
181
structure length
181
Chain Sequence
LNPKIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSSLRPIKVDSQEHKITLYENPNFTGKKMEVIDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGAPQPQVQSVRRIRDMQW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Eye lens protein
molecule keywords BETA B2-CRYSTALLIN
publication title X-ray analysis of beta B2-crystallin and evolution of oligomeric lens proteins.
pubmed doi rcsb
source organism Bos taurus
total genus 43
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 1992-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2bb2A02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2bb2A01
3I9HA 3CW3A 2B1OA 4AKAA 4GCRA 1PRSA 4NI3A 1YHPA 2JDGA 2M3CA 1OKIA 1ZIRA 3HZ2A 4JGFA 2JDFA 1I5IA 2KP5A 3LWKA 2BB2A 4W9AA 3ENTA 1E7NA 1H4AX 4FD9A 1ZWMA 1GCSA 4PSRA 2K1XA 1M8UA 1BLBA 1A5DA 1A45A 1NPSA 2K1WA 2KFBA 2DADA 2NBRA 4PSPA 5HT8A 1ZIQA 1ZIEA 1ELPA 1HK0X 3HZBA 2M3UA 4IAUA 3ENUA 2G98A 1HA4A 2BV2A 1ZGTA 4GR7A 4W9BA 3SNYA 1PRRA 2A5MA 5HT9A 1AMMA 1DSLA 1ZWOA 1A7HA 1AG4A 1BD7A 2V2UA 1GAMA 3IAJA 3SNZA 3SO1A 3SO0A 4EL6A 1YTQA 2M3TA 1HDFA 3QK3A
chains in the Genus database with same CATH superfamily
3I9HA 4AKAA 1YHPA 3HZ2A 2JDFA 1I5IA 3LWKA 1ZWMA 1GCSA 4PSRA 1A45A 1NPSA 1WKTA 4IAUA 1G6EA 1ZGTA 1AMMA 1A7HA 3SO0A 1BD7A 1BHUA 3CW3A 2B1OA 4W9AA 1BLBA 1M8UA 2KFBA 2DADA 1ELPA 1HK0X 3ENUA 2G98A 2BV2A 3SNYA 5HT9A 1DSLA 1ZWOA 3IAJA 1GAMA 3SO1A 1YTQA 4GCRA 1OKIA 1ZIRA 4JGFA 3UJZA 2BB2A 1E7NA 4FD9A 2K1XA 1A5DA 1F53A 2NBRA 4PSPA 1ZIEA 4NI3A 2V2UA 4EL6A 1HDFA 3QK3A 1PRSA 1GH5A 2JDGA 2M3CA 2KP5A 1C01A 3ENTA 1H4AX 5HT8A 1ZIQA 3HZBA 2M3UA 1HA4A 4GR7A 4W9BA 1PRRA 2A5MA 3SNZA 1AG4A 2M3TA 2K1WA
chains in the Genus database with same CATH topology
3I9HA 3CW3A 2B1OA 4AKAA 4GCRA 1PRSA 4NI3A 1YHPA 2JDGA 2M3CA 1OKIA 1ZIRA 3HZ2A 4JGFA 2JDFA 1I5IA 2KP5A 3LWKA 2BB2A 4W9AA 3ENTA 1E7NA 1H4AX 4FD9A 1ZWMA 1GCSA 4PSRA 2K1XA 1M8UA 1BLBA 1A5DA 1A45A 1NPSA 2K1WA 2KFBA 2DADA 2NBRA 4PSPA 5HT8A 1ZIQA 1ZIEA 1ELPA 1HK0X 3HZBA 2M3UA 4IAUA 3ENUA 2G98A 1HA4A 2BV2A 1ZGTA 4GR7A 4W9BA 3SNYA 1PRRA 2A5MA 5HT9A 1AMMA 1DSLA 1ZWOA 1A7HA 1AG4A 1BD7A 2V2UA 1GAMA 3IAJA 3SNZA 3SO1A 3SO0A 4EL6A 1YTQA 2M3TA 1HDFA 3QK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I9H A;  3CW3 A;  2B1O A;  4AKA A;  4GCR A;  1PRS A;  4NI3 A;  1YHP A;  2JDG A;  2M3C A;  1OKI A;  1ZIR A;  3HZ2 A;  4JGF A;  2JDF A;  1I5I A;  2KP5 A;  3LWK A;  2BB2 A;  4W9A A;  3ENT A;  1E7N A;  1H4A X;  4FD9 A;  1ZWM A;  1GCS A;  4PSR A;  2K1X A;  1M8U A;  1BLB A;  1A5D A;  1A45 A;  1NPS A;  2K1W A;  2KFB A;  2DAD A;  2NBR A;  4PSP A;  5HT8 A;  1ZIQ A;  1ZIE A;  1ELP A;  1HK0 X;  3HZB A;  2M3U A;  4IAU A;  3ENU A;  2G98 A;  1HA4 A;  2BV2 A;  1ZGT A;  4GR7 A;  4W9B A;  3SNY A;  1PRR A;  2A5M A;  5HT9 A;  1AMM A;  1DSL A;  1ZWO A;  1A7H A;  1AG4 A;  1BD7 A;  2V2U A;  1GAM A;  3IAJ A;  3SNZ A;  3SO1 A;  3SO0 A;  4EL6 A;  1YTQ A;  2M3T A;  1HDF A;  3QK3 A; 
#chains in the Genus database with same CATH topology
 3I9H A;  4AKA A;  1YHP A;  3HZ2 A;  2JDF A;  1I5I A;  3LWK A;  1ZWM A;  1GCS A;  4PSR A;  1A45 A;  1NPS A;  1WKT A;  4IAU A;  1G6E A;  1ZGT A;  1AMM A;  1A7H A;  3SO0 A;  1BD7 A;  1BHU A;  3CW3 A;  2B1O A;  4W9A A;  1BLB A;  1M8U A;  2KFB A;  2DAD A;  1ELP A;  1HK0 X;  3ENU A;  2G98 A;  2BV2 A;  3SNY A;  5HT9 A;  1DSL A;  1ZWO A;  3IAJ A;  1GAM A;  3SO1 A;  1YTQ A;  4GCR A;  1OKI A;  1ZIR A;  4JGF A;  3UJZ A;  2BB2 A;  1E7N A;  4FD9 A;  2K1X A;  1A5D A;  1F53 A;  2NBR A;  4PSP A;  1ZIE A;  4NI3 A;  2V2U A;  4EL6 A;  1HDF A;  3QK3 A;  1PRS A;  1GH5 A;  2JDG A;  2M3C A;  2KP5 A;  1C01 A;  3ENT A;  1H4A X;  5HT8 A;  1ZIQ A;  3HZB A;  2M3U A;  1HA4 A;  4GR7 A;  4W9B A;  1PRR A;  2A5M A;  3SNZ A;  1AG4 A;  2M3T A;  2K1W A; 
#chains in the Genus database with same CATH homology
 3I9H A;  3CW3 A;  2B1O A;  4AKA A;  4GCR A;  1PRS A;  4NI3 A;  1YHP A;  2JDG A;  2M3C A;  1OKI A;  1ZIR A;  3HZ2 A;  4JGF A;  2JDF A;  1I5I A;  2KP5 A;  3LWK A;  2BB2 A;  4W9A A;  3ENT A;  1E7N A;  1H4A X;  4FD9 A;  1ZWM A;  1GCS A;  4PSR A;  2K1X A;  1M8U A;  1BLB A;  1A5D A;  1A45 A;  1NPS A;  2K1W A;  2KFB A;  2DAD A;  2NBR A;  4PSP A;  5HT8 A;  1ZIQ A;  1ZIE A;  1ELP A;  1HK0 X;  3HZB A;  2M3U A;  4IAU A;  3ENU A;  2G98 A;  1HA4 A;  2BV2 A;  1ZGT A;  4GR7 A;  4W9B A;  3SNY A;  1PRR A;  2A5M A;  5HT9 A;  1AMM A;  1DSL A;  1ZWO A;  1A7H A;  1AG4 A;  1BD7 A;  2V2U A;  1GAM A;  3IAJ A;  3SNZ A;  3SO1 A;  3SO0 A;  4EL6 A;  1YTQ A;  2M3T A;  1HDF A;  3QK3 A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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