2BB3A

Crystal structure of cobalamin biosynthesis precorrin-6y methylase (cbie) from archaeoglobus fulgidus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
198
structure length
194
Chain Sequence
SGHMIWIVGSGTCRGQTTERAKEIIERAEVIYGSRRALELAGVVDDSRARILRSFKGDEIRRIMEEGREREVAVISTGDPMVAGLGRVLREIAEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCFDAELTELLKYRHLLILADSHFPLERLGKRRVVLLENLCMEGERIREGNADSIELESDYTIIFVEREV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Cobalamin Biosynthesis Precorrin-6Y Methylase (cbiE) from Archaeoglobus fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
molecule keywords cobalamin biosynthesis precorrin-6Y methylase (cbiE)
total genus 46
structure length 194
sequence length 198
chains with identical sequence B
ec nomenclature ec 2.1.1.-:
pdb deposition date 2005-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2bb3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2bb3A01
2ZVBA 2E0KA 2ELEA 2EK3A 2OWUA 1VE2A 2PCMA 2DEKA 2OWVA 2EGBA 2EH2A 1WDEA 2PCHA 3ND1A 2EHCA 2EHLA 1WYZA 2NPNA 3NDCA 4E16A 2ELDA 2OWGA 2HR8A 3FQ6A 2E8SA 2EMUA 2HUTA 2Z6RA 2EMRA 2P6LA 1PJQA 1PJTA 2YBQA 2E8HA 2EL0A 2E07A 2E4NA 2DV3A 5HW4A 2EN5A 2EGLA 2PB4A 3KWPA 2EL2A 2EJKA 3FFYA 2EJJA 2E4RA 1PJSA 3NEIA 2ENIA 2EL3A 2P6KA 2HUVA 1WNGA 2ED5A 2DXVA 2P6DA 2E8QA 2EJZA 2OWKA 2EGSA 2EH5A 2P9DA 2EKAA 2CBFA 1VHVA 2ED3A 2PCKA 2PCAA 2QBUA 3HH1A 2DSGA 2E15A 2ZVCA 2HUQA 3NUTA 2PB6A 2HUXA 2OWFA 2E08A 2DXWA 2YBOA 2EK4A 2PCIA 2EL1A 2P5FA 2DV5A 1V9AA 1VA0A 2P5CA 2DV4A 2E7RA 2EK7A 2P6IA 2E0NA 2EEQA 2E17A 2E16A 2PB5A 2EK2A 2BB3A 2DXXA 1CBFA 2DSIA 3I4TA 2DSHA 2EH4A 1S4DA 1VCEA 2DV7A 2PCGA 2P2XA 2E8RA
chains in the Genus database with same CATH superfamily
2ZVBA 2E0KA 4N7BA 3KE9A 2ELEA 2EK3A 4MUYA 2KYYA 4MV5A 2OWUA 1VE2A 2PCMA 2DEKA 3DNFA 2OWVA 2EGBA 4H4EA 2EH2A 1WDEA 2PCHA 3UV3A 3ND1A 2EHCA 2EHLA 1WYZA 2NPNA 3NDCA 4E16A 2ELDA 2OWGA 2HR8A 3KEMA 3SZUA 3SZLA 3FQ6A 2E8SA 2EMUA 2HUTA 2Z6RA 2EMRA 2P6LA 1PJQA 3TIXB 1PJTA 2YBQA 2E8HA 2EL0A 2E07A 2E4NA 2DV3A 4MV0A 3LMMA 5HW4A 2EN5A 2EGLA 2PB4A 3KWPA 2EL2A 2EJKA 3FFYA 2EJJA 3KELA 2E4RA 1PJSA 3NEIA 2ENIA 3UTDA 2EL3A 2P6KA 3ZGNA 2HUVA 1WNGA 2ED5A 2DXVA 3URKA 3KEFA 2P6DA 4MUXA 2E8QA 2EJZA 2OWKA 3T0FA 2EGSA 4H4DA 3F7TA 2EH5A 3UV7A 3UTCA 2P9DA 2EKAA 2CBFA 1VHVA 2ED3A 3T0GA 2PCKA 2PCAA 2QBUA 3HH1A 2DSGA 2E15A 2ZVCA 4H4CA 2HUQA 3NUTA 2PB6A 2HUXA 2OWFA 2E08A 2DXWA 2YBOA 2EK4A 3ZGLA 3KE8A 2PCIA 2EL1A 2P5FA 2DV5A 3UV6A 1V9AA 1VA0A 3SZOA 2P5CA 2DV4A 2E7RA 2EK7A 2P6IA 2E0NA 2EEQA 2E17A 2E16A 2PB5A 4EB3A 2EK2A 2BB3A 2DXXA 1CBFA 2DSIA 3I4TA 3UWMA 2DSHA 2EH4A 1S4DA 1VCEA 2DV7A 2PCGA 2P2XA 2E8RA
chains in the Genus database with same CATH topology
2ZVBA 2E0KA 4N7BA 3KE9A 2ELEA 2EK3A 4MUYA 2KYYA 4MV5A 2OWUA 1VE2A 2PCMA 2DEKA 3DNFA 2OWVA 2EGBA 4H4EA 2EH2A 1WDEA 2PCHA 3UV3A 3ND1A 2EHCA 2EHLA 1WYZA 2NPNA 3NDCA 4E16A 2ELDA 2OWGA 2HR8A 3KEMA 3SZUA 3SZLA 3FQ6A 2E8SA 2EMUA 2HUTA 2Z6RA 2EMRA 2P6LA 1PJQA 3TIXB 1PJTA 2YBQA 2E8HA 2EL0A 2E07A 2E4NA 2DV3A 4MV0A 3LMMA 5HW4A 2EN5A 2EGLA 2PB4A 3KWPA 2EL2A 2EJKA 3FFYA 2EJJA 3KELA 2E4RA 1PJSA 3NEIA 2ENIA 3UTDA 2EL3A 2P6KA 3ZGNA 2HUVA 1WNGA 2ED5A 2DXVA 3URKA 3KEFA 2P6DA 4MUXA 2E8QA 2EJZA 2OWKA 3T0FA 2EGSA 4H4DA 3F7TA 2EH5A 3UV7A 3UTCA 2P9DA 2EKAA 2CBFA 1VHVA 2ED3A 3T0GA 2PCKA 2PCAA 2QBUA 3HH1A 2DSGA 2E15A 2ZVCA 4H4CA 2HUQA 3NUTA 2PB6A 2HUXA 2OWFA 2E08A 2DXWA 2YBOA 2EK4A 3ZGLA 3KE8A 2PCIA 2EL1A 2P5FA 2DV5A 3UV6A 1V9AA 1VA0A 3SZOA 2P5CA 2DV4A 2E7RA 2EK7A 2P6IA 2E0NA 2EEQA 2E17A 2E16A 2PB5A 4EB3A 2EK2A 2BB3A 2DXXA 1CBFA 2DSIA 3I4TA 3UWMA 2DSHA 2EH4A 1S4DA 1VCEA 2DV7A 2PCGA 2P2XA 2E8RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZVB A;  2E0K A;  2ELE A;  2EK3 A;  2OWU A;  1VE2 A;  2PCM A;  2DEK A;  2OWV A;  2EGB A;  2EH2 A;  1WDE A;  2PCH A;  3ND1 A;  2EHC A;  2EHL A;  1WYZ A;  2NPN A;  3NDC A;  4E16 A;  2ELD A;  2OWG A;  2HR8 A;  3FQ6 A;  2E8S A;  2EMU A;  2HUT A;  2Z6R A;  2EMR A;  2P6L A;  1PJQ A;  1PJT A;  2YBQ A;  2E8H A;  2EL0 A;  2E07 A;  2E4N A;  2DV3 A;  5HW4 A;  2EN5 A;  2EGL A;  2PB4 A;  3KWP A;  2EL2 A;  2EJK A;  3FFY A;  2EJJ A;  2E4R A;  1PJS A;  3NEI A;  2ENI A;  2EL3 A;  2P6K A;  2HUV A;  1WNG A;  2ED5 A;  2DXV A;  2P6D A;  2E8Q A;  2EJZ A;  2OWK A;  2EGS A;  2EH5 A;  2P9D A;  2EKA A;  2CBF A;  1VHV A;  2ED3 A;  2PCK A;  2PCA A;  2QBU A;  3HH1 A;  2DSG A;  2E15 A;  2ZVC A;  2HUQ A;  3NUT A;  2PB6 A;  2HUX A;  2OWF A;  2E08 A;  2DXW A;  2YBO A;  2EK4 A;  2PCI A;  2EL1 A;  2P5F A;  2DV5 A;  1V9A A;  1VA0 A;  2P5C A;  2DV4 A;  2E7R A;  2EK7 A;  2P6I A;  2E0N A;  2EEQ A;  2E17 A;  2E16 A;  2PB5 A;  2EK2 A;  2BB3 A;  2DXX A;  1CBF A;  2DSI A;  3I4T A;  2DSH A;  2EH4 A;  1S4D A;  1VCE A;  2DV7 A;  2PCG A;  2P2X A;  2E8R A; 
#chains in the Genus database with same CATH topology
 2ZVB A;  2E0K A;  4N7B A;  3KE9 A;  2ELE A;  2EK3 A;  4MUY A;  2KYY A;  4MV5 A;  2OWU A;  1VE2 A;  2PCM A;  2DEK A;  3DNF A;  2OWV A;  2EGB A;  4H4E A;  2EH2 A;  1WDE A;  2PCH A;  3UV3 A;  3ND1 A;  2EHC A;  2EHL A;  1WYZ A;  2NPN A;  3NDC A;  4E16 A;  2ELD A;  2OWG A;  2HR8 A;  3KEM A;  3SZU A;  3SZL A;  3FQ6 A;  2E8S A;  2EMU A;  2HUT A;  2Z6R A;  2EMR A;  2P6L A;  1PJQ A;  3TIX B;  1PJT A;  2YBQ A;  2E8H A;  2EL0 A;  2E07 A;  2E4N A;  2DV3 A;  4MV0 A;  3LMM A;  5HW4 A;  2EN5 A;  2EGL A;  2PB4 A;  3KWP A;  2EL2 A;  2EJK A;  3FFY A;  2EJJ A;  3KEL A;  2E4R A;  1PJS A;  3NEI A;  2ENI A;  3UTD A;  2EL3 A;  2P6K A;  3ZGN A;  2HUV A;  1WNG A;  2ED5 A;  2DXV A;  3URK A;  3KEF A;  2P6D A;  4MUX A;  2E8Q A;  2EJZ A;  2OWK A;  3T0F A;  2EGS A;  4H4D A;  3F7T A;  2EH5 A;  3UV7 A;  3UTC A;  2P9D A;  2EKA A;  2CBF A;  1VHV A;  2ED3 A;  3T0G A;  2PCK A;  2PCA A;  2QBU A;  3HH1 A;  2DSG A;  2E15 A;  2ZVC A;  4H4C A;  2HUQ A;  3NUT A;  2PB6 A;  2HUX A;  2OWF A;  2E08 A;  2DXW A;  2YBO A;  2EK4 A;  3ZGL A;  3KE8 A;  2PCI A;  2EL1 A;  2P5F A;  2DV5 A;  3UV6 A;  1V9A A;  1VA0 A;  3SZO A;  2P5C A;  2DV4 A;  2E7R A;  2EK7 A;  2P6I A;  2E0N A;  2EEQ A;  2E17 A;  2E16 A;  2PB5 A;  4EB3 A;  2EK2 A;  2BB3 A;  2DXX A;  1CBF A;  2DSI A;  3I4T A;  3UWM A;  2DSH A;  2EH4 A;  1S4D A;  1VCE A;  2DV7 A;  2PCG A;  2P2X A;  2E8R A; 
#chains in the Genus database with same CATH homology
 2ZVB A;  2E0K A;  4N7B A;  3KE9 A;  2ELE A;  2EK3 A;  4MUY A;  2KYY A;  4MV5 A;  2OWU A;  1VE2 A;  2PCM A;  2DEK A;  3DNF A;  2OWV A;  2EGB A;  4H4E A;  2EH2 A;  1WDE A;  2PCH A;  3UV3 A;  3ND1 A;  2EHC A;  2EHL A;  1WYZ A;  2NPN A;  3NDC A;  4E16 A;  2ELD A;  2OWG A;  2HR8 A;  3KEM A;  3SZU A;  3SZL A;  3FQ6 A;  2E8S A;  2EMU A;  2HUT A;  2Z6R A;  2EMR A;  2P6L A;  1PJQ A;  3TIX B;  1PJT A;  2YBQ A;  2E8H A;  2EL0 A;  2E07 A;  2E4N A;  2DV3 A;  4MV0 A;  3LMM A;  5HW4 A;  2EN5 A;  2EGL A;  2PB4 A;  3KWP A;  2EL2 A;  2EJK A;  3FFY A;  2EJJ A;  3KEL A;  2E4R A;  1PJS A;  3NEI A;  2ENI A;  3UTD A;  2EL3 A;  2P6K A;  3ZGN A;  2HUV A;  1WNG A;  2ED5 A;  2DXV A;  3URK A;  3KEF A;  2P6D A;  4MUX A;  2E8Q A;  2EJZ A;  2OWK A;  3T0F A;  2EGS A;  4H4D A;  3F7T A;  2EH5 A;  3UV7 A;  3UTC A;  2P9D A;  2EKA A;  2CBF A;  1VHV A;  2ED3 A;  3T0G A;  2PCK A;  2PCA A;  2QBU A;  3HH1 A;  2DSG A;  2E15 A;  2ZVC A;  4H4C A;  2HUQ A;  3NUT A;  2PB6 A;  2HUX A;  2OWF A;  2E08 A;  2DXW A;  2YBO A;  2EK4 A;  3ZGL A;  3KE8 A;  2PCI A;  2EL1 A;  2P5F A;  2DV5 A;  3UV6 A;  1V9A A;  1VA0 A;  3SZO A;  2P5C A;  2DV4 A;  2E7R A;  2EK7 A;  2P6I A;  2E0N A;  2EEQ A;  2E17 A;  2E16 A;  2PB5 A;  4EB3 A;  2EK2 A;  2BB3 A;  2DXX A;  1CBF A;  2DSI A;  3I4T A;  3UWM A;  2DSH A;  2EH4 A;  1S4D A;  1VCE A;  2DV7 A;  2PCG A;  2P2X A;  2E8R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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