2BB3A

Crystal structure of cobalamin biosynthesis precorrin-6y methylase (cbie) from archaeoglobus fulgidus
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
198
structure length
194
Chain Sequence
SGHMIWIVGSGTCRGQTTERAKEIIERAEVIYGSRRALELAGVVDDSRARILRSFKGDEIRRIMEEGREREVAVISTGDPMVAGLGRVLREIAEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCFDAELTELLKYRHLLILADSHFPLERLGKRRVVLLENLCMEGERIREGNADSIELESDYTIIFVEREV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structure of Cobalamin Biosynthesis Precorrin-6Y Methylase (cbiE) from Archaeoglobus fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
molecule keywords cobalamin biosynthesis precorrin-6Y methylase (cbiE)
total genus 46
structure length 194
sequence length 198
chains with identical sequence B
ec nomenclature ec 2.1.1.-:
pdb deposition date 2005-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2bb3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2bb3A01
2EL2A 2EL3A 2DV7A 2OWGA 2DV5A 1CBFA 3FFYA 2OWFA 3KWPA 2PCHA 2YBOA 4E16A 2DXWA 1PJQA 2E8QA 1VE2A 2PCKA 2EK4A 2BB3A 1VCEA 2ZVCA 2ELDA 2OWKA 2E8RA 1WDEA 2DSHA 2DXVA 3I4TA 2DXXA 2EH4A 2EMRA 2CBFA 2P6DA 3NDCA 3HH1A 2P6LA 2EEQA 2P6IA 2ED3A 2E8HA 2PCGA 2EL1A 3NEIA 2EJZA 2ED5A 2DV3A 2EK2A 2E4RA 2E8SA 2P2XA 2E07A 1S4DA 2EKAA 2DEKA 2EGLA 2OWVA 2Z6RA 1VA0A 1VHVA 2P9DA 2EGSA 2E08A 2PCIA 2NPNA 1WNGA 2YBQA 1PJTA 2E16A 2EJJA 2DV4A 2QBUA 2EH2A 2HR8A 2EMUA 3ND1A 2E4NA 2E7RA 2EK7A 2ELEA 2HUTA 2PCMA 2E17A 2OWUA 2DSIA 2EJKA 2EHCA 1V9AA 2PB5A 2HUVA 2E0NA 2P5CA 2E0KA 2E15A 2P6KA 2HUXA 2EN5A 2DSGA 2ENIA 2EHLA 2P5FA 2EH5A 2PB6A 1WYZA 2PB4A 2ZVBA 3FQ6A 3NUTA 2PCAA 2EK3A 2EL0A 2EGBA 5HW4A 1PJSA 2HUQA
chains in the Genus database with same CATH superfamily
2EL2A 2EL3A 2DV7A 2OWGA 2DV5A 1CBFA 3FFYA 3SZLA 2OWFA 3KWPA 3DNFA 2PCHA 4H4CA 2YBOA 4E16A 4H4DA 3URKA 2DXWA 1PJQA 2E8QA 1VE2A 2PCKA 3T0FA 2EK4A 2BB3A 1VCEA 2ZVCA 2ELDA 2OWKA 3KE8A 2E8RA 1WDEA 2DSHA 2DXVA 3I4TA 2DXXA 2EH4A 2EMRA 2CBFA 2P6DA 3NDCA 3HH1A 2P6LA 2EEQA 2P6IA 4MV5A 2ED3A 2E8HA 2PCGA 3F7TA 3ZGNA 2EL1A 3NEIA 3UV6A 2EJZA 2ED5A 2DV3A 2EK2A 3KEFA 2E4RA 3UV3A 2E8SA 3UWMA 2P2XA 2E07A 1S4DA 3SZUA 2EKAA 2KYYA 2DEKA 2EGLA 2OWVA 3KE9A 2Z6RA 3KEMA 1VA0A 1VHVA 2P9DA 2EGSA 4H4EA 2E08A 2PCIA 2NPNA 1WNGA 2YBQA 1PJTA 2E16A 4N7BA 2EJJA 2DV4A 2QBUA 3LMMA 2EH2A 2HR8A 2EMUA 4EB3A 3ND1A 4MUXA 2E4NA 2E7RA 3UTDA 2EK7A 2ELEA 2HUTA 4MV0A 3ZGLA 2PCMA 2E17A 2OWUA 2DSIA 2EJKA 2EHCA 1V9AA 2PB5A 2HUVA 2E0NA 2P5CA 2E0KA 2E15A 2P6KA 3KELA 2HUXA 2EN5A 2DSGA 2ENIA 2EHLA 2P5FA 2EH5A 2PB6A 3T0GA 1WYZA 2PB4A 2ZVBA 3FQ6A 3NUTA 3SZOA 2PCAA 2EK3A 2EL0A 3TIXB 2EGBA 5HW4A 3UTCA 3UV7A 1PJSA 4MUYA 2HUQA
chains in the Genus database with same CATH topology
2EL2A 2EL3A 2DV7A 2OWGA 2DV5A 1CBFA 3FFYA 3SZLA 2OWFA 3KWPA 3DNFA 2PCHA 4H4CA 2YBOA 4E16A 4H4DA 3URKA 2DXWA 1PJQA 2E8QA 1VE2A 2PCKA 3T0FA 2EK4A 2BB3A 1VCEA 2ZVCA 2ELDA 2OWKA 3KE8A 2E8RA 1WDEA 2DSHA 2DXVA 3I4TA 2DXXA 2EH4A 2EMRA 2CBFA 2P6DA 3NDCA 3HH1A 2P6LA 2EEQA 2P6IA 4MV5A 2ED3A 2E8HA 2PCGA 3F7TA 3ZGNA 2EL1A 3NEIA 3UV6A 2EJZA 2ED5A 2DV3A 2EK2A 3KEFA 2E4RA 3UV3A 2E8SA 3UWMA 2P2XA 2E07A 1S4DA 3SZUA 2EKAA 2KYYA 2DEKA 2EGLA 2OWVA 3KE9A 2Z6RA 3KEMA 1VA0A 1VHVA 2P9DA 2EGSA 4H4EA 2E08A 2PCIA 2NPNA 1WNGA 2YBQA 1PJTA 2E16A 4N7BA 2EJJA 2DV4A 2QBUA 3LMMA 2EH2A 2HR8A 2EMUA 4EB3A 3ND1A 4MUXA 2E4NA 2E7RA 3UTDA 2EK7A 2ELEA 2HUTA 4MV0A 3ZGLA 2PCMA 2E17A 2OWUA 2DSIA 2EJKA 2EHCA 1V9AA 2PB5A 2HUVA 2E0NA 2P5CA 2E0KA 2E15A 2P6KA 3KELA 2HUXA 2EN5A 2DSGA 2ENIA 2EHLA 2P5FA 2EH5A 2PB6A 3T0GA 1WYZA 2PB4A 2ZVBA 3FQ6A 3NUTA 3SZOA 2PCAA 2EK3A 2EL0A 3TIXB 2EGBA 5HW4A 3UTCA 3UV7A 1PJSA 4MUYA 2HUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EL2 A;  2EL3 A;  2DV7 A;  2OWG A;  2DV5 A;  1CBF A;  3FFY A;  2OWF A;  3KWP A;  2PCH A;  2YBO A;  4E16 A;  2DXW A;  1PJQ A;  2E8Q A;  1VE2 A;  2PCK A;  2EK4 A;  2BB3 A;  1VCE A;  2ZVC A;  2ELD A;  2OWK A;  2E8R A;  1WDE A;  2DSH A;  2DXV A;  3I4T A;  2DXX A;  2EH4 A;  2EMR A;  2CBF A;  2P6D A;  3NDC A;  3HH1 A;  2P6L A;  2EEQ A;  2P6I A;  2ED3 A;  2E8H A;  2PCG A;  2EL1 A;  3NEI A;  2EJZ A;  2ED5 A;  2DV3 A;  2EK2 A;  2E4R A;  2E8S A;  2P2X A;  2E07 A;  1S4D A;  2EKA A;  2DEK A;  2EGL A;  2OWV A;  2Z6R A;  1VA0 A;  1VHV A;  2P9D A;  2EGS A;  2E08 A;  2PCI A;  2NPN A;  1WNG A;  2YBQ A;  1PJT A;  2E16 A;  2EJJ A;  2DV4 A;  2QBU A;  2EH2 A;  2HR8 A;  2EMU A;  3ND1 A;  2E4N A;  2E7R A;  2EK7 A;  2ELE A;  2HUT A;  2PCM A;  2E17 A;  2OWU A;  2DSI A;  2EJK A;  2EHC A;  1V9A A;  2PB5 A;  2HUV A;  2E0N A;  2P5C A;  2E0K A;  2E15 A;  2P6K A;  2HUX A;  2EN5 A;  2DSG A;  2ENI A;  2EHL A;  2P5F A;  2EH5 A;  2PB6 A;  1WYZ A;  2PB4 A;  2ZVB A;  3FQ6 A;  3NUT A;  2PCA A;  2EK3 A;  2EL0 A;  2EGB A;  5HW4 A;  1PJS A;  2HUQ A; 
#chains in the Genus database with same CATH topology
 2EL2 A;  2EL3 A;  2DV7 A;  2OWG A;  2DV5 A;  1CBF A;  3FFY A;  3SZL A;  2OWF A;  3KWP A;  3DNF A;  2PCH A;  4H4C A;  2YBO A;  4E16 A;  4H4D A;  3URK A;  2DXW A;  1PJQ A;  2E8Q A;  1VE2 A;  2PCK A;  3T0F A;  2EK4 A;  2BB3 A;  1VCE A;  2ZVC A;  2ELD A;  2OWK A;  3KE8 A;  2E8R A;  1WDE A;  2DSH A;  2DXV A;  3I4T A;  2DXX A;  2EH4 A;  2EMR A;  2CBF A;  2P6D A;  3NDC A;  3HH1 A;  2P6L A;  2EEQ A;  2P6I A;  4MV5 A;  2ED3 A;  2E8H A;  2PCG A;  3F7T A;  3ZGN A;  2EL1 A;  3NEI A;  3UV6 A;  2EJZ A;  2ED5 A;  2DV3 A;  2EK2 A;  3KEF A;  2E4R A;  3UV3 A;  2E8S A;  3UWM A;  2P2X A;  2E07 A;  1S4D A;  3SZU A;  2EKA A;  2KYY A;  2DEK A;  2EGL A;  2OWV A;  3KE9 A;  2Z6R A;  3KEM A;  1VA0 A;  1VHV A;  2P9D A;  2EGS A;  4H4E A;  2E08 A;  2PCI A;  2NPN A;  1WNG A;  2YBQ A;  1PJT A;  2E16 A;  4N7B A;  2EJJ A;  2DV4 A;  2QBU A;  3LMM A;  2EH2 A;  2HR8 A;  2EMU A;  4EB3 A;  3ND1 A;  4MUX A;  2E4N A;  2E7R A;  3UTD A;  2EK7 A;  2ELE A;  2HUT A;  4MV0 A;  3ZGL A;  2PCM A;  2E17 A;  2OWU A;  2DSI A;  2EJK A;  2EHC A;  1V9A A;  2PB5 A;  2HUV A;  2E0N A;  2P5C A;  2E0K A;  2E15 A;  2P6K A;  3KEL A;  2HUX A;  2EN5 A;  2DSG A;  2ENI A;  2EHL A;  2P5F A;  2EH5 A;  2PB6 A;  3T0G A;  1WYZ A;  2PB4 A;  2ZVB A;  3FQ6 A;  3NUT A;  3SZO A;  2PCA A;  2EK3 A;  2EL0 A;  3TIX B;  2EGB A;  5HW4 A;  3UTC A;  3UV7 A;  1PJS A;  4MUY A;  2HUQ A; 
#chains in the Genus database with same CATH homology
 2EL2 A;  2EL3 A;  2DV7 A;  2OWG A;  2DV5 A;  1CBF A;  3FFY A;  3SZL A;  2OWF A;  3KWP A;  3DNF A;  2PCH A;  4H4C A;  2YBO A;  4E16 A;  4H4D A;  3URK A;  2DXW A;  1PJQ A;  2E8Q A;  1VE2 A;  2PCK A;  3T0F A;  2EK4 A;  2BB3 A;  1VCE A;  2ZVC A;  2ELD A;  2OWK A;  3KE8 A;  2E8R A;  1WDE A;  2DSH A;  2DXV A;  3I4T A;  2DXX A;  2EH4 A;  2EMR A;  2CBF A;  2P6D A;  3NDC A;  3HH1 A;  2P6L A;  2EEQ A;  2P6I A;  4MV5 A;  2ED3 A;  2E8H A;  2PCG A;  3F7T A;  3ZGN A;  2EL1 A;  3NEI A;  3UV6 A;  2EJZ A;  2ED5 A;  2DV3 A;  2EK2 A;  3KEF A;  2E4R A;  3UV3 A;  2E8S A;  3UWM A;  2P2X A;  2E07 A;  1S4D A;  3SZU A;  2EKA A;  2KYY A;  2DEK A;  2EGL A;  2OWV A;  3KE9 A;  2Z6R A;  3KEM A;  1VA0 A;  1VHV A;  2P9D A;  2EGS A;  4H4E A;  2E08 A;  2PCI A;  2NPN A;  1WNG A;  2YBQ A;  1PJT A;  2E16 A;  4N7B A;  2EJJ A;  2DV4 A;  2QBU A;  3LMM A;  2EH2 A;  2HR8 A;  2EMU A;  4EB3 A;  3ND1 A;  4MUX A;  2E4N A;  2E7R A;  3UTD A;  2EK7 A;  2ELE A;  2HUT A;  4MV0 A;  3ZGL A;  2PCM A;  2E17 A;  2OWU A;  2DSI A;  2EJK A;  2EHC A;  1V9A A;  2PB5 A;  2HUV A;  2E0N A;  2P5C A;  2E0K A;  2E15 A;  2P6K A;  3KEL A;  2HUX A;  2EN5 A;  2DSG A;  2ENI A;  2EHL A;  2P5F A;  2EH5 A;  2PB6 A;  3T0G A;  1WYZ A;  2PB4 A;  2ZVB A;  3FQ6 A;  3NUT A;  3SZO A;  2PCA A;  2EK3 A;  2EL0 A;  3TIX B;  2EGB A;  5HW4 A;  3UTC A;  3UV7 A;  1PJS A;  4MUY A;  2HUQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...