2BB3A

Crystal structure of cobalamin biosynthesis precorrin-6y methylase (cbie) from archaeoglobus fulgidus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
198
structure length
194
Chain Sequence
b'SGHMIWIVGSGTCRGQTTERAKEIIERAEVIYGSRRALELAGVVDDSRARILRSFKGDEIRRIMEEGREREVAVISTGDPMVAGLGRVLREIAEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCFDAELTELLKYRHLLILADSHFPLERLGKRRVVLLENLCMEGERIREGNADSIELESDYTIIFVEREV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords cobalamin biosynthesis precorrin-6Y methylase (cbiE)
publication title Crystal Structure of Cobalamin Biosynthesis Precorrin-6Y Methylase (cbiE) from Archaeoglobus fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
total genus 46
structure length 194
sequence length 198
chains with identical sequence B
ec nomenclature ec 2.1.1.-:
pdb deposition date 2005-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2bb3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2bb3A01
2PCMA 2PCAA 2E8RA 2NPNA 2ZVBA 2EL3A 1PJQA 2CBFA 2DV5A 2E4RA 2EJJA 2HUVA 2P6KA 5HW4A 3ND1A 1V9AA 3FFYA 2P2XA 1WDEA 2E17A 2OWGA 2DSIA 2EH5A 2E08A 1VHVA 2E0NA 2EK4A 1VA0A 2E7RA 2PCHA 4E16A 2PB6A 1WNGA 2EH2A 2EMRA 2E8HA 2E07A 1WYZA 2HR8A 2YBOA 2DXXA 2EK3A 1PJTA 2ZVCA 1CBFA 2PCIA 2PB5A 2OWKA 2EL1A 2BB3A 2DSHA 2EN5A 2PB4A 1PJSA 2ELDA 1VE2A 2EMUA 2OWVA 2P5FA 2E16A 2EL2A 2P6LA 2DSGA 2E4NA 2EGBA 2EK2A 2ENIA 2EHLA 2ELEA 3NUTA 2HUXA 2E0KA 2P9DA 2DV7A 2PCGA 2EKAA 2DXWA 2EGSA 1VCEA 2P6IA 3FQ6A 2OWUA 2DXVA 2DV4A 3KWPA 2EJZA 3NDCA 2EH4A 1S4DA 2HUQA 3NEIA 2DV3A 2EEQA 2YBQA 2OWFA 2E8SA 2QBUA 2P5CA 2DEKA 2EJKA 2PCKA 2EK7A 2E15A 2EL0A 2ED3A 2ED5A 2Z6RA 3I4TA 3HH1A 2EGLA 2P6DA 2E8QA 2EHCA 2HUTA
chains in the Genus database with same CATH superfamily
2PCMA 2PCAA 2E8RA 2NPNA 2ZVBA 2EL3A 1PJQA 2CBFA 2DV5A 2E4RA 2EJJA 3SZUA 2HUVA 3KELA 2P6KA 5HW4A 3ND1A 1V9AA 4H4EA 3FFYA 2P2XA 3SZOA 1WDEA 2E17A 2OWGA 2DSIA 2EH5A 2E08A 1VHVA 2E0NA 2EK4A 1VA0A 2E7RA 2PCHA 4MUXA 4H4DA 4H4CA 4E16A 2PB6A 1WNGA 2EH2A 2EMRA 2E8HA 4N7BA 2E07A 1WYZA 2HR8A 2YBOA 2DXXA 2EK3A 1PJTA 2ZVCA 1CBFA 3SZLA 2PCIA 2PB5A 2OWKA 2EL1A 2BB3A 2DSHA 3URKA 2EN5A 2PB4A 1PJSA 2ELDA 1VE2A 2EMUA 2OWVA 3UV3A 2P5FA 2E16A 2EL2A 2P6LA 3UV7A 2DSGA 2E4NA 2EGBA 2EK2A 2ENIA 2EHLA 2ELEA 3NUTA 3KE9A 2HUXA 2E0KA 2P9DA 2DV7A 2PCGA 3KEMA 2EKAA 2DXWA 2EGSA 1VCEA 2P6IA 3FQ6A 3T0FA 2OWUA 4MV0A 2DXVA 2DV4A 3KWPA 2EJZA 3NDCA 3UTCA 3ZGNA 2EH4A 1S4DA 2HUQA 3NEIA 3DNFA 3TIXB 2DV3A 2EEQA 2YBQA 3KE8A 3LMMA 3UTDA 2OWFA 2E8SA 3T0GA 4EB3A 2QBUA 4MV5A 3ZGLA 2KYYA 2P5CA 2DEKA 2EJKA 3UWMA 2PCKA 3KEFA 2EK7A 2E15A 2EL0A 2ED3A 2ED5A 2Z6RA 3I4TA 3F7TA 3HH1A 4MUYA 2EGLA 2P6DA 2E8QA 2EHCA 3UV6A 2HUTA
chains in the Genus database with same CATH topology
2PCMA 2PCAA 2E8RA 2NPNA 2ZVBA 2EL3A 1PJQA 2CBFA 2DV5A 2E4RA 2EJJA 3SZUA 2HUVA 3KELA 2P6KA 5HW4A 3ND1A 1V9AA 4H4EA 3FFYA 2P2XA 3SZOA 1WDEA 2E17A 2OWGA 2DSIA 2EH5A 2E08A 1VHVA 2E0NA 2EK4A 1VA0A 2E7RA 2PCHA 4MUXA 4H4DA 4H4CA 4E16A 2PB6A 1WNGA 2EH2A 2EMRA 2E8HA 4N7BA 2E07A 1WYZA 2HR8A 2YBOA 2DXXA 2EK3A 1PJTA 2ZVCA 1CBFA 3SZLA 2PCIA 2PB5A 2OWKA 2EL1A 2BB3A 2DSHA 3URKA 2EN5A 2PB4A 1PJSA 2ELDA 1VE2A 2EMUA 2OWVA 3UV3A 2P5FA 2E16A 2EL2A 2P6LA 3UV7A 2DSGA 2E4NA 2EGBA 2EK2A 2ENIA 2EHLA 2ELEA 3NUTA 3KE9A 2HUXA 2E0KA 2P9DA 2DV7A 2PCGA 3KEMA 2EKAA 2DXWA 2EGSA 1VCEA 2P6IA 3FQ6A 3T0FA 2OWUA 4MV0A 2DXVA 2DV4A 3KWPA 2EJZA 3NDCA 3UTCA 3ZGNA 2EH4A 1S4DA 2HUQA 3NEIA 3DNFA 3TIXB 2DV3A 2EEQA 2YBQA 3KE8A 3LMMA 3UTDA 2OWFA 2E8SA 3T0GA 4EB3A 2QBUA 4MV5A 3ZGLA 2KYYA 2P5CA 2DEKA 2EJKA 3UWMA 2PCKA 3KEFA 2EK7A 2E15A 2EL0A 2ED3A 2ED5A 2Z6RA 3I4TA 3F7TA 3HH1A 4MUYA 2EGLA 2P6DA 2E8QA 2EHCA 3UV6A 2HUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCM A;  2PCA A;  2E8R A;  2NPN A;  2ZVB A;  2EL3 A;  1PJQ A;  2CBF A;  2DV5 A;  2E4R A;  2EJJ A;  2HUV A;  2P6K A;  5HW4 A;  3ND1 A;  1V9A A;  3FFY A;  2P2X A;  1WDE A;  2E17 A;  2OWG A;  2DSI A;  2EH5 A;  2E08 A;  1VHV A;  2E0N A;  2EK4 A;  1VA0 A;  2E7R A;  2PCH A;  4E16 A;  2PB6 A;  1WNG A;  2EH2 A;  2EMR A;  2E8H A;  2E07 A;  1WYZ A;  2HR8 A;  2YBO A;  2DXX A;  2EK3 A;  1PJT A;  2ZVC A;  1CBF A;  2PCI A;  2PB5 A;  2OWK A;  2EL1 A;  2BB3 A;  2DSH A;  2EN5 A;  2PB4 A;  1PJS A;  2ELD A;  1VE2 A;  2EMU A;  2OWV A;  2P5F A;  2E16 A;  2EL2 A;  2P6L A;  2DSG A;  2E4N A;  2EGB A;  2EK2 A;  2ENI A;  2EHL A;  2ELE A;  3NUT A;  2HUX A;  2E0K A;  2P9D A;  2DV7 A;  2PCG A;  2EKA A;  2DXW A;  2EGS A;  1VCE A;  2P6I A;  3FQ6 A;  2OWU A;  2DXV A;  2DV4 A;  3KWP A;  2EJZ A;  3NDC A;  2EH4 A;  1S4D A;  2HUQ A;  3NEI A;  2DV3 A;  2EEQ A;  2YBQ A;  2OWF A;  2E8S A;  2QBU A;  2P5C A;  2DEK A;  2EJK A;  2PCK A;  2EK7 A;  2E15 A;  2EL0 A;  2ED3 A;  2ED5 A;  2Z6R A;  3I4T A;  3HH1 A;  2EGL A;  2P6D A;  2E8Q A;  2EHC A;  2HUT A; 
#chains in the Genus database with same CATH topology
 2PCM A;  2PCA A;  2E8R A;  2NPN A;  2ZVB A;  2EL3 A;  1PJQ A;  2CBF A;  2DV5 A;  2E4R A;  2EJJ A;  3SZU A;  2HUV A;  3KEL A;  2P6K A;  5HW4 A;  3ND1 A;  1V9A A;  4H4E A;  3FFY A;  2P2X A;  3SZO A;  1WDE A;  2E17 A;  2OWG A;  2DSI A;  2EH5 A;  2E08 A;  1VHV A;  2E0N A;  2EK4 A;  1VA0 A;  2E7R A;  2PCH A;  4MUX A;  4H4D A;  4H4C A;  4E16 A;  2PB6 A;  1WNG A;  2EH2 A;  2EMR A;  2E8H A;  4N7B A;  2E07 A;  1WYZ A;  2HR8 A;  2YBO A;  2DXX A;  2EK3 A;  1PJT A;  2ZVC A;  1CBF A;  3SZL A;  2PCI A;  2PB5 A;  2OWK A;  2EL1 A;  2BB3 A;  2DSH A;  3URK A;  2EN5 A;  2PB4 A;  1PJS A;  2ELD A;  1VE2 A;  2EMU A;  2OWV A;  3UV3 A;  2P5F A;  2E16 A;  2EL2 A;  2P6L A;  3UV7 A;  2DSG A;  2E4N A;  2EGB A;  2EK2 A;  2ENI A;  2EHL A;  2ELE A;  3NUT A;  3KE9 A;  2HUX A;  2E0K A;  2P9D A;  2DV7 A;  2PCG A;  3KEM A;  2EKA A;  2DXW A;  2EGS A;  1VCE A;  2P6I A;  3FQ6 A;  3T0F A;  2OWU A;  4MV0 A;  2DXV A;  2DV4 A;  3KWP A;  2EJZ A;  3NDC A;  3UTC A;  3ZGN A;  2EH4 A;  1S4D A;  2HUQ A;  3NEI A;  3DNF A;  3TIX B;  2DV3 A;  2EEQ A;  2YBQ A;  3KE8 A;  3LMM A;  3UTD A;  2OWF A;  2E8S A;  3T0G A;  4EB3 A;  2QBU A;  4MV5 A;  3ZGL A;  2KYY A;  2P5C A;  2DEK A;  2EJK A;  3UWM A;  2PCK A;  3KEF A;  2EK7 A;  2E15 A;  2EL0 A;  2ED3 A;  2ED5 A;  2Z6R A;  3I4T A;  3F7T A;  3HH1 A;  4MUY A;  2EGL A;  2P6D A;  2E8Q A;  2EHC A;  3UV6 A;  2HUT A; 
#chains in the Genus database with same CATH homology
 2PCM A;  2PCA A;  2E8R A;  2NPN A;  2ZVB A;  2EL3 A;  1PJQ A;  2CBF A;  2DV5 A;  2E4R A;  2EJJ A;  3SZU A;  2HUV A;  3KEL A;  2P6K A;  5HW4 A;  3ND1 A;  1V9A A;  4H4E A;  3FFY A;  2P2X A;  3SZO A;  1WDE A;  2E17 A;  2OWG A;  2DSI A;  2EH5 A;  2E08 A;  1VHV A;  2E0N A;  2EK4 A;  1VA0 A;  2E7R A;  2PCH A;  4MUX A;  4H4D A;  4H4C A;  4E16 A;  2PB6 A;  1WNG A;  2EH2 A;  2EMR A;  2E8H A;  4N7B A;  2E07 A;  1WYZ A;  2HR8 A;  2YBO A;  2DXX A;  2EK3 A;  1PJT A;  2ZVC A;  1CBF A;  3SZL A;  2PCI A;  2PB5 A;  2OWK A;  2EL1 A;  2BB3 A;  2DSH A;  3URK A;  2EN5 A;  2PB4 A;  1PJS A;  2ELD A;  1VE2 A;  2EMU A;  2OWV A;  3UV3 A;  2P5F A;  2E16 A;  2EL2 A;  2P6L A;  3UV7 A;  2DSG A;  2E4N A;  2EGB A;  2EK2 A;  2ENI A;  2EHL A;  2ELE A;  3NUT A;  3KE9 A;  2HUX A;  2E0K A;  2P9D A;  2DV7 A;  2PCG A;  3KEM A;  2EKA A;  2DXW A;  2EGS A;  1VCE A;  2P6I A;  3FQ6 A;  3T0F A;  2OWU A;  4MV0 A;  2DXV A;  2DV4 A;  3KWP A;  2EJZ A;  3NDC A;  3UTC A;  3ZGN A;  2EH4 A;  1S4D A;  2HUQ A;  3NEI A;  3DNF A;  3TIX B;  2DV3 A;  2EEQ A;  2YBQ A;  3KE8 A;  3LMM A;  3UTD A;  2OWF A;  2E8S A;  3T0G A;  4EB3 A;  2QBU A;  4MV5 A;  3ZGL A;  2KYY A;  2P5C A;  2DEK A;  2EJK A;  3UWM A;  2PCK A;  3KEF A;  2EK7 A;  2E15 A;  2EL0 A;  2ED3 A;  2ED5 A;  2Z6R A;  3I4T A;  3F7T A;  3HH1 A;  4MUY A;  2EGL A;  2P6D A;  2E8Q A;  2EHC A;  3UV6 A;  2HUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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