2BDDA

Crystal structure of holo-acp-synthase from plasmodium yoelii
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
162
structure length
127
Chain Sequence
QGHHIIGIGTDILCVNRIYKILEKNINFIKKVLNPFELAEFETQNELKKLAIYVSKKFAAKEAILKSMGRLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEMGIVKIFLSISDEKFIIQAQALAVGSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords ACP-synthase
publication title Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.
pubmed doi rcsb
source organism Plasmodium yoelii yoelii
total genus 39
structure length 127
sequence length 162
ec nomenclature ec 2.7.7.61: Citrate lyase holo-[acyl-carrier protein] synthase.
pdb deposition date 2005-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01648 ACPS 4'-phosphopantetheinyl transferase superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.20 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A 4'-phosphopantetheinyl transferase domain 2bddA00
2WDYA 2C43A 2WDSA 4DXEA 3GWMA 5CXDA 4JM7A 1QR0A 3NE3B 1FTEA 3QMNA 3H7QA 1FTFA 3NE9A 3HQJA 2JCAA 2BDDA 2CG5A 1FTHA 3NFDA 3NE1A 1F7LA 2WASB 4MRTA 2WATA 3HYKA 2QG8A 1F80A 5CMOA 2WDOA 2WASA 2BYDA 4HC6A 1F7TA 2JBZA
chains in the Genus database with same CATH superfamily
1VQ7R 3CCUR 1VQOR 2C43A 4DXEA 1VQ5R 3G6ER 5CXDA 3CCMR 3CCLR 1YJ9R 2ZJRP 5JVHP 5HL7P 1N8RS 1VQ4R 3NE9A 5GAHT 2JCAA 3J7ZS 5GAGT 3CMAR 3G71R 3G4SR 1VQMR 1F7LA 4WFAP 1NBWA 2OTJR 2QG8A 5CMOA 2WDOA 3CMER 2BYDA 1YI2R 2WDYA 2D0PA 5DM7P 2QEXR 1YITR 4JM7A 4U67P 1KC8S 1QR0A 3I56R 3NE3B 3CC7R 4UY8S 3OW2Q 1FTEA 5MLCU 1I4JA 3HQJA 2CG5A 3CCRR 1Q81S 1VQ8R 3CPWQ 5JVGP 3NE1A 1NJIS 1KD1S 4IOAP 1VQ9R 2ZJPP 4IOCP 1W2BQ 1K73S 3PIPP 1KQSQ 5GADT 2OTLR 4IO9P 4WF9P 1M90S 1F7TA 5H1SU 1YHQR 3CD6R 4WCEP 2QA4R 1QVGQ 1K8AS 1QVFQ 1VQPR 1VQ6R 3CF5P 1JJ2Q 1BXEA 1VQKR 1Q82S 3QMNA 3H7QA 1FTFA 3CCQR 3PIOP 3NFDA 1M1KS 3I55R 3CCJR 1S72R 1K9MS 3CC2R 3CCSR 4MRTA 3CXCQ 3CCVR 4HC6A 2ZJQP 3CCER 2WDSA 1Q7YS 3GWMA 1VQNR 1YJWR 3CC4R 3DLLP 2BDDA 1FTHA 5DM6P 1YJNR 3J7YT 2WASB 4V19W 4WFBP 4WFNP 1Q86S 1YIJR 1VQLR 2WATA 3HYKA 5GAET 1F80A 2WASA 2D0OA 2JBZA
chains in the Genus database with same CATH topology
2WDYA 2C43A 2WDSA 4DXEA 3GWMA 5CXDA 4JM7A 1QR0A 3NE3B 1FTEA 3QMNA 3H7QA 1FTFA 3NE9A 3HQJA 2JCAA 2BDDA 2CG5A 1FTHA 3NFDA 3NE1A 1F7LA 2WASB 4MRTA 2WATA 3HYKA 2QG8A 1F80A 5CMOA 2WDOA 2WASA 2BYDA 4HC6A 1F7TA 2JBZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDY A;  2C43 A;  2WDS A;  4DXE A;  3GWM A;  5CXD A;  4JM7 A;  1QR0 A;  3NE3 B;  1FTE A;  3QMN A;  3H7Q A;  1FTF A;  3NE9 A;  3HQJ A;  2JCA A;  2BDD A;  2CG5 A;  1FTH A;  3NFD A;  3NE1 A;  1F7L A;  2WAS B;  4MRT A;  2WAT A;  3HYK A;  2QG8 A;  1F80 A;  5CMO A;  2WDO A;  2WAS A;  2BYD A;  4HC6 A;  1F7T A;  2JBZ A; 
#chains in the Genus database with same CATH topology
 1VQ7 R;  3CCU R;  1VQO R;  2C43 A;  4DXE A;  1VQ5 R;  3G6E R;  5CXD A;  3CCM R;  3CCL R;  1YJ9 R;  2ZJR P;  5JVH P;  5HL7 P;  1N8R S;  1VQ4 R;  3NE9 A;  5GAH T;  2JCA A;  3J7Z S;  5GAG T;  3CMA R;  3G71 R;  3G4S R;  1VQM R;  1F7L A;  4WFA P;  1NBW A;  2OTJ R;  2QG8 A;  5CMO A;  2WDO A;  3CME R;  2BYD A;  1YI2 R;  2WDY A;  2D0P A;  5DM7 P;  2QEX R;  1YIT R;  4JM7 A;  4U67 P;  1KC8 S;  1QR0 A;  3I56 R;  3NE3 B;  3CC7 R;  4UY8 S;  3OW2 Q;  1FTE A;  5MLC U;  1I4J A;  3HQJ A;  2CG5 A;  3CCR R;  1Q81 S;  1VQ8 R;  3CPW Q;  5JVG P;  3NE1 A;  1NJI S;  1KD1 S;  4IOA P;  1VQ9 R;  2ZJP P;  4IOC P;  1W2B Q;  1K73 S;  3PIP P;  1KQS Q;  5GAD T;  2OTL R;  4IO9 P;  4WF9 P;  1M90 S;  1F7T A;  5H1S U;  1YHQ R;  3CD6 R;  4WCE P;  2QA4 R;  1QVG Q;  1K8A S;  1QVF Q;  1VQP R;  1VQ6 R;  3CF5 P;  1JJ2 Q;  1BXE A;  1VQK R;  1Q82 S;  3QMN A;  3H7Q A;  1FTF A;  3CCQ R;  3PIO P;  3NFD A;  1M1K S;  3I55 R;  3CCJ R;  1S72 R;  1K9M S;  3CC2 R;  3CCS R;  4MRT A;  3CXC Q;  3CCV R;  4HC6 A;  2ZJQ P;  3CCE R;  2WDS A;  1Q7Y S;  3GWM A;  1VQN R;  1YJW R;  3CC4 R;  3DLL P;  2BDD A;  1FTH A;  5DM6 P;  1YJN R;  3J7Y T;  2WAS B;  4V19 W;  4WFB P;  4WFN P;  1Q86 S;  1YIJ R;  1VQL R;  2WAT A;  3HYK A;  5GAE T;  1F80 A;  2WAS A;  2D0O A;  2JBZ A; 
#chains in the Genus database with same CATH homology
 2WDY A;  2C43 A;  2WDS A;  4DXE A;  3GWM A;  5CXD A;  4JM7 A;  1QR0 A;  3NE3 B;  1FTE A;  3QMN A;  3H7Q A;  1FTF A;  3NE9 A;  3HQJ A;  2JCA A;  2BDD A;  2CG5 A;  1FTH A;  3NFD A;  3NE1 A;  1F7L A;  2WAS B;  4MRT A;  2WAT A;  3HYK A;  2QG8 A;  1F80 A;  5CMO A;  2WDO A;  2WAS A;  2BYD A;  4HC6 A;  1F7T A;  2JBZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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