2BM6A

The structure of mfpa (rv3361c, c2221 crystal form). the pentapeptide repeat protein from mycobacterium tuberculosis folds as a right- handed quadrilateral beta-helix.
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
178
structure length
178
Chain Sequence
QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Pentapeptide repeat protein
source organism Mycobacterium tuberculosis
publication title A Fluroquinolone Resistance Protein from Mycobacterium Tuberculosis that Mimics DNA
pubmed doi rcsb
molecule keywords PENTAPEPTIDE REPEAT FAMILY PROTEIN
total genus 76
structure length 178
sequence length 178
ec nomenclature
pdb deposition date 2005-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.100 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 2bm6A00
2F3LA 2G0YA 2J8IA 2W7ZA 4JRAC 2BM7A 2BM6A 5JMCB 3N90A 2BM4A 2BM5A 5JLVC
chains in the Genus database with same CATH superfamily
1QA1A 2F3LA 2NTPA 1CLWA 2NT6A 5DNSA 3B8YA 1CZFA 2Z8GA 3PSSA 2INVA 1O8GA 3SQVA 3N6ZA 4XN0A 1QA2A 4XOTA 1HF2A 3WWGA 1TYXA 1AIRA 2NSPA 4XLCA 2VFNA 4XLHA 3B4NA 1PE9A 5JMCB 2IQ7A 4EW9A 1OFEA 3GQAA 2XTWA 3LMWA 2J8KA 4YZQA 3VSTA 4OJLA 1EA0A 3GQ9A 5AMVA 3TH0A 4OJ6A 5C1CA 2IOUG 1O8DA 4YDTA 4NK8A 1O8LA 3H09A 4OPWA 1QQ1A 4NK6A 1OGMX 1OFLA 1TYUA 4U4BA 4V02C 1OFMA 3KRGA 3LJYA 1O8FA 4Z06A 4YZ0A 1K5CA 1WMRA 1BN8A 4YCQA 2INUA 3DU1X 3ML3A 3VSVA 2W7ZA 3FY3A 1O8MA 3NAWA 3ZSCA 2X85A 2PECA 4W8TA 3SZEA 2O1DA 3SY2A 1JRGA 4Z03A 2O0VA 1WXRA 1KTWA 4W8QA 3B90A 2BM7A 2BX6A 2VFOA 1LLWA 1QJVA 2VFPA 4XKWA 3GRHA 5C1EA 4XLFA 2BSPA 4YC5A 1K8FA 4YELA 2G0YA 3EQOA 3PETA 2O6WA 3EQNA 1IA5A 4KH3A 2PYGA 1H80A 2BM4A 4XQFA 2BM5A 1O8JA 2ODLA 4XKVA 4HWVA 4OJPA 4XLEA 2X6WA 2NSTA 2XT2A 2B0RA 4OJ5A 2O04A 1EZGA 1O8EA 3VSUA 2BM6A 2PYHA 3SYJA 1RMGA 2UVEA 3RIQA 4I84A 2X6YA 3AK5A 4OZZA 2XC1A 2VBEA 4XLAA 2NTQA 2V5IA 4YEJA 3N90A 4XR6A 3VMVA 2NT9A 3T9GA 1K4ZA 1DABA 2J8IA 1XG2A 4Z05A 2QY1A 4AVZA 2VBKA 4YFOA 3UW0A 1DBGA 2X3HA 1O8IA 4OM9A 2QYUA 4URRA 4U49A 1X0CA 1VBLA 1IDKA 1PLUA 2XTXA 2QX3A 2VBMA 2NTBA 4XM3A 4MXNA 4YEIA 4XORA 1QA3A 1JTAA 1HG8A 4OZYA 2X6XA 1DBOA 3NB2A 1IDJA 4C2LA 1QCXA 2YUHA 1OOCA 1RWRA 2NZMA 4W8RA 3VMWA 1LLZA 2UVFA 3GQ7A 1PXZA 4XN3A 3ZPPA 1QRBA 2XTYA 3P4GA 2QXZA 1TSPA 1TYWA 3LYCA 1LM1A 4XOPA 3JURA 2VJJA 2O17A 3BH6B 5JLVC 1EE6A 1KCDA 4XNFA 1KCCA 3PSZA 4MR0A 1TYVA 4XL9A 2EWEA 2VFMA 2VFQA 2XT4A 4PMHA 1QRCA 2QZAA 1KQ5A 1O8HA 3BH7B 1O88A 3JX8A 1BHEA 1NHCA 1L1IA 4W8SA 4YZXA 1OFDA 3SUCA 4JRAC 4YZAA 4OJOA 1GQ8A 4XONA 1OGOX 1RU4A 2O0WA 2VJIA 1O8KA 4XMYA 3GQ8A 1IB4A
chains in the Genus database with same CATH topology
1QA1A 2F3LA 3ML3A 1CLWA 2B0RA 2W7ZA 4OJ5A 2BM6A 2YUHA 3SYJA 3SZEA 1QA2A 3N6ZA 3RIQA 1HF2A 3AK5A 1QRBA 2XC1A 3P4GA 1TYXA 3LJYA 1WXRA 2VFNA 2V5IA 1TSPA 2BM7A 5JMCB 1TYWA 3LYCA 3N90A 2BX6A 3BH6B 1K4ZA 2VFOA 2VFPA 4OJLA 2J8IA 1DABA 3TH0A 4OJ6A 1TYVA 4OM9A 2VFMA 2IOUG 2VFQA 1QRCA 1K8FA 1KQ5A 3BH7B 3JX8A 3H09A 4OPWA 1QQ1A 2G0YA 3PETA 4JRAC 4KH3A 4OJOA 1TYUA 4V02C 2BM4A 2BM5A 1QA3A 5JLVC 4OJPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F3L A;  2G0Y A;  2J8I A;  2W7Z A;  4JRA C;  2BM7 A;  2BM6 A;  5JMC B;  3N90 A;  2BM4 A;  2BM5 A;  5JLV C; 
#chains in the Genus database with same CATH topology
 1QA1 A;  2F3L A;  2NTP A;  1CLW A;  2NT6 A;  5DNS A;  3B8Y A;  1CZF A;  2Z8G A;  3PSS A;  2INV A;  1O8G A;  3SQV A;  3N6Z A;  4XN0 A;  1QA2 A;  4XOT A;  1HF2 A;  3WWG A;  1TYX A;  1AIR A;  2NSP A;  4XLC A;  2VFN A;  4XLH A;  3B4N A;  1PE9 A;  5JMC B;  2IQ7 A;  4EW9 A;  1OFE A;  3GQA A;  2XTW A;  3LMW A;  2J8K A;  4YZQ A;  3VST A;  4OJL A;  1EA0 A;  3GQ9 A;  5AMV A;  3TH0 A;  4OJ6 A;  5C1C A;  2IOU G;  1O8D A;  4YDT A;  4NK8 A;  1O8L A;  3H09 A;  4OPW A;  1QQ1 A;  4NK6 A;  1OGM X;  1OFL A;  1TYU A;  4U4B A;  4V02 C;  1OFM A;  3KRG A;  3LJY A;  1O8F A;  4Z06 A;  4YZ0 A;  1K5C A;  1WMR A;  1BN8 A;  4YCQ A;  2INU A;  3DU1 X;  3ML3 A;  3VSV A;  2W7Z A;  3FY3 A;  1O8M A;  3NAW A;  3ZSC A;  2X85 A;  2PEC A;  4W8T A;  3SZE A;  2O1D A;  3SY2 A;  1JRG A;  4Z03 A;  2O0V A;  1WXR A;  1KTW A;  4W8Q A;  3B90 A;  2BM7 A;  2BX6 A;  2VFO A;  1LLW A;  1QJV A;  2VFP A;  4XKW A;  3GRH A;  5C1E A;  4XLF A;  2BSP A;  4YC5 A;  1K8F A;  4YEL A;  2G0Y A;  3EQO A;  3PET A;  2O6W A;  3EQN A;  1IA5 A;  4KH3 A;  2PYG A;  1H80 A;  2BM4 A;  4XQF A;  2BM5 A;  1O8J A;  2ODL A;  4XKV A;  4HWV A;  4OJP A;  4XLE A;  2X6W A;  2NST A;  2XT2 A;  2B0R A;  4OJ5 A;  2O04 A;  1EZG A;  1O8E A;  3VSU A;  2BM6 A;  2PYH A;  3SYJ A;  1RMG A;  2UVE A;  3RIQ A;  4I84 A;  2X6Y A;  3AK5 A;  4OZZ A;  2XC1 A;  2VBE A;  4XLA A;  2NTQ A;  2V5I A;  4YEJ A;  3N90 A;  4XR6 A;  3VMV A;  2NT9 A;  3T9G A;  1K4Z A;  1DAB A;  2J8I A;  1XG2 A;  4Z05 A;  2QY1 A;  4AVZ A;  2VBK A;  4YFO A;  3UW0 A;  1DBG A;  2X3H A;  1O8I A;  4OM9 A;  2QYU A;  4URR A;  4U49 A;  1X0C A;  1VBL A;  1IDK A;  1PLU A;  2XTX A;  2QX3 A;  2VBM A;  2NTB A;  4XM3 A;  4MXN A;  4YEI A;  4XOR A;  1QA3 A;  1JTA A;  1HG8 A;  4OZY A;  2X6X A;  1DBO A;  3NB2 A;  1IDJ A;  4C2L A;  1QCX A;  2YUH A;  1OOC A;  1RWR A;  2NZM A;  4W8R A;  3VMW A;  1LLZ A;  2UVF A;  3GQ7 A;  1PXZ A;  4XN3 A;  3ZPP A;  1QRB A;  2XTY A;  3P4G A;  2QXZ A;  1TSP A;  1TYW A;  3LYC A;  1LM1 A;  4XOP A;  3JUR A;  2VJJ A;  2O17 A;  3BH6 B;  5JLV C;  1EE6 A;  1KCD A;  4XNF A;  1KCC A;  3PSZ A;  4MR0 A;  1TYV A;  4XL9 A;  2EWE A;  2VFM A;  2VFQ A;  2XT4 A;  4PMH A;  1QRC A;  2QZA A;  1KQ5 A;  1O8H A;  3BH7 B;  1O88 A;  3JX8 A;  1BHE A;  1NHC A;  1L1I A;  4W8S A;  4YZX A;  1OFD A;  3SUC A;  4JRA C;  4YZA A;  4OJO A;  1GQ8 A;  4XON A;  1OGO X;  1RU4 A;  2O0W A;  2VJI A;  1O8K A;  4XMY A;  3GQ8 A;  1IB4 A; 
#chains in the Genus database with same CATH homology
 1QA1 A;  2F3L A;  3ML3 A;  1CLW A;  2B0R A;  2W7Z A;  4OJ5 A;  2BM6 A;  2YUH A;  3SYJ A;  3SZE A;  1QA2 A;  3N6Z A;  3RIQ A;  1HF2 A;  3AK5 A;  1QRB A;  2XC1 A;  3P4G A;  1TYX A;  3LJY A;  1WXR A;  2VFN A;  2V5I A;  1TSP A;  2BM7 A;  5JMC B;  1TYW A;  3LYC A;  3N90 A;  2BX6 A;  3BH6 B;  1K4Z A;  2VFO A;  2VFP A;  4OJL A;  2J8I A;  1DAB A;  3TH0 A;  4OJ6 A;  1TYV A;  4OM9 A;  2VFM A;  2IOU G;  2VFQ A;  1QRC A;  1K8F A;  1KQ5 A;  3BH7 B;  3JX8 A;  3H09 A;  4OPW A;  1QQ1 A;  2G0Y A;  3PET A;  4JRA C;  4KH3 A;  4OJO A;  1TYU A;  4V02 C;  2BM4 A;  2BM5 A;  1QA3 A;  5JLV C;  4OJP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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