2BMOA

The crystal structure of nitrobenzene dioxygenase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
437
structure length
437
Chain Sequence
YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
molecule keywords OXYGENASE-ALPHA NBDO
molecule tags Oxidoreductase
source organism Comamonas sp.
total genus 157
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmoA01
2E4QA 2NUKA 1RIEA 4HM8A 2DE6D 3EN1A 2E74D 1P84E 2XSHA 3VMHD 1Q90C 4U3FE 3N0QA 5CXMA 1WW9A 1NU1E 4HKVA 2NUMA 4AAYB 2D2CD 2YFIA 3L74E 4NBDD 2B24A 1O7NA 1Z01A 4QUQA 1UUWA 3GCFA 2E76D 2GBXA 4NBCA 2DE5D 3L75E 5BOKA 1RFSA 2BCCE 4NBAD 4QCKA 3VMGD 1NTZE 3GCEA 3L72E 2HMOA 1SQVE 1Z02A 2HMJA 4HJLA 4NB9D 3VMGA 1BE3E 1O7GA 4HM5A 1NTKE 2BMOA 1NYKA 4NB8A 4NB9A 4P1CH 1SQXE 3H1IE 3H1HE 1ULIA 1VCKA 2Q3WA 3GZYA 3GZXA 1SQBE 3VCAA 2JO6A 3D89A 4HM2A 4NBFA 3VCPA 3EQQA 2BMQA 3GOBA 1SQPE 4HM3A 2NVEA 4PV1D 3L71E 1VF5D 5KKZC 2E75D 3H1KE 1ZRTE 4NBCD 1JM1A 5KLIC 1O7HA 2XRXA 2ZT9D 2QPZA 3GL0A 4NBEA 1L0NE 3GTSA 1Z03A 4HM7A 2HMKA 2QJKC 4NBHD 4NB8D 4HM1A 4H44D 1NTME 2YIUC 4QURA 2CKFA 3FOUA 3GKQA 4NBHA 2NWFA 4P1BH 5HL4A 3H1LE 3VMIA 4NBFD 2NVGA 4HM4A 2GBWA 2HMLA 3GB4A 4QDFB 2A06E 1G8JB 1O7WA 3L73E 4NBGD 1WQLA 1PP9E 2XR8A 2FYNC 5AEUA 2YFLA 2DE7D 1G8KB 1KB9E 4NBGA 2ZYLA 2DE7A 3H1JE 3DQYA 4NBED 3C0DA 2JZAA 3GTEA 5KLVE 4QDFA 2IBZE 1UUVA 3L70E 3CX5E 5AEWA 2NVFA 2FYUE 1EG9A 2B1XA 2HMNA 4PD4E 3VMID 2BMRA 2HMMA 2DE6A 2XSOA 4NBBD 4H0LD 4EMJB 2YVJB 3TGUE 1ULJA 3VMHA 2I7FA 4NBBA 3GL2A 2E4PA 1KYOE 2YFJA 1NDOA 3CXHE 3GKEA 4QDCA 3BCCE 3CWBE 4HM0A 4H13D 4NBDA 3AZCA 1VM9A 1O7PA 4HM6A 4AIVA 4QDDA 1L0LE 2QJPC 2DE5A 1FQTA 1SQQE 2QJYC 4OGQD 4QUPA 1SJGA 1PPJE 1BCCE 4NBAA 1EZVE 1O7MA
chains in the Genus database with same CATH superfamily
2E4QA 2NUKA 1RIEA 4HM8A 2DE6D 3EN1A 2E74D 1P84E 2XSHA 3VMHD 1Q90C 4U3FE 3N0QA 5CXMA 1WW9A 1NU1E 4HKVA 2NUMA 4AAYB 2D2CD 2YFIA 3L74E 4NBDD 2B24A 1O7NA 1Z01A 4QUQA 1UUWA 3GCFA 2E76D 2GBXA 4NBCA 2DE5D 3L75E 5BOKA 1RFSA 2BCCE 4NBAD 4QCKA 3VMGD 1NTZE 3GCEA 3L72E 2HMOA 1SQVE 1Z02A 2HMJA 4HJLA 4NB9D 3VMGA 1BE3E 1O7GA 4HM5A 1NTKE 2BMOA 1NYKA 4NB8A 4NB9A 4P1CH 1SQXE 3H1IE 3H1HE 1ULIA 1VCKA 2Q3WA 3GZYA 3GZXA 1SQBE 3VCAA 2JO6A 3D89A 4HM2A 4NBFA 3VCPA 3EQQA 2BMQA 3GOBA 1SQPE 4HM3A 2NVEA 4PV1D 3L71E 1VF5D 5KKZC 2E75D 3H1KE 1ZRTE 4NBCD 1JM1A 5KLIC 1O7HA 2XRXA 2ZT9D 2QPZA 3GL0A 4NBEA 1L0NE 3GTSA 1Z03A 4HM7A 2HMKA 2QJKC 4NBHD 4NB8D 4HM1A 4H44D 1NTME 2YIUC 4QURA 2CKFA 3FOUA 3GKQA 4NBHA 2NWFA 4P1BH 5HL4A 3H1LE 3VMIA 4NBFD 2NVGA 4HM4A 2GBWA 2HMLA 3GB4A 4QDFB 2A06E 1G8JB 1O7WA 3L73E 4NBGD 1WQLA 1PP9E 2XR8A 2FYNC 5AEUA 2YFLA 2DE7D 1G8KB 1KB9E 4NBGA 2ZYLA 2DE7A 3H1JE 3DQYA 4NBED 3C0DA 2JZAA 3GTEA 5KLVE 4QDFA 2IBZE 1UUVA 3L70E 3CX5E 5AEWA 2NVFA 2FYUE 1EG9A 2B1XA 2HMNA 4PD4E 3VMID 2BMRA 2HMMA 2DE6A 2XSOA 4NBBD 4H0LD 4EMJB 2YVJB 3TGUE 1ULJA 3VMHA 2I7FA 4NBBA 3GL2A 2E4PA 1KYOE 2YFJA 1NDOA 3CXHE 3GKEA 4QDCA 3BCCE 3CWBE 4HM0A 4H13D 4NBDA 3AZCA 1VM9A 1O7PA 4HM6A 4AIVA 4QDDA 1L0LE 2QJPC 2DE5A 1FQTA 1SQQE 2QJYC 4OGQD 4QUPA 1SJGA 1PPJE 1BCCE 4NBAA 1EZVE 1O7MA
chains in the Genus database with same CATH topology
2E4QA 2NUKA 1RIEA 4HM8A 2DE6D 3EN1A 2E74D 1P84E 2XSHA 3VMHD 1Q90C 4U3FE 3N0QA 5CXMA 1WW9A 1NU1E 4HKVA 2NUMA 4AAYB 2D2CD 2YFIA 3L74E 4NBDD 2B24A 1O7NA 1Z01A 4QUQA 1UUWA 3GCFA 2E76D 2GBXA 4NBCA 2DE5D 3L75E 5BOKA 1RFSA 2BCCE 4NBAD 4QCKA 3VMGD 1NTZE 3GCEA 3L72E 2HMOA 1SQVE 1Z02A 2HMJA 4HJLA 4NB9D 3VMGA 1BE3E 1O7GA 4HM5A 1NTKE 2BMOA 1NYKA 4NB8A 4NB9A 4P1CH 1SQXE 3H1IE 3H1HE 1ULIA 1VCKA 2Q3WA 3GZYA 3GZXA 1SQBE 3VCAA 2JO6A 3D89A 4HM2A 4NBFA 3VCPA 3EQQA 2BMQA 3GOBA 1SQPE 4HM3A 2NVEA 4PV1D 3L71E 1VF5D 5KKZC 2E75D 3H1KE 1ZRTE 4NBCD 1JM1A 5KLIC 1O7HA 2XRXA 2ZT9D 2QPZA 3GL0A 4NBEA 1L0NE 3GTSA 1Z03A 4HM7A 2HMKA 2QJKC 4NBHD 4NB8D 4HM1A 4H44D 1NTME 2YIUC 4QURA 2CKFA 3FOUA 3GKQA 4NBHA 2NWFA 4P1BH 5HL4A 3H1LE 3VMIA 4NBFD 2NVGA 4HM4A 2GBWA 2HMLA 3GB4A 4QDFB 2A06E 1G8JB 1O7WA 3L73E 4NBGD 1WQLA 1PP9E 2XR8A 2FYNC 5AEUA 2YFLA 2DE7D 1G8KB 1KB9E 4NBGA 2ZYLA 2DE7A 3H1JE 3DQYA 4NBED 3C0DA 2JZAA 3GTEA 5KLVE 4QDFA 2IBZE 1UUVA 3L70E 3CX5E 5AEWA 2NVFA 2FYUE 1EG9A 2B1XA 2HMNA 4PD4E 3VMID 2BMRA 2HMMA 2DE6A 2XSOA 4NBBD 4H0LD 4EMJB 2YVJB 3TGUE 1ULJA 3VMHA 2I7FA 4NBBA 3GL2A 2E4PA 1KYOE 2YFJA 1NDOA 3CXHE 3GKEA 4QDCA 3BCCE 3CWBE 4HM0A 4H13D 4NBDA 3AZCA 1VM9A 1O7PA 4HM6A 4AIVA 4QDDA 1L0LE 2QJPC 2DE5A 1FQTA 1SQQE 2QJYC 4OGQD 4QUPA 1SJGA 1PPJE 1BCCE 4NBAA 1EZVE 1O7MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E4Q A;  2NUK A;  1RIE A;  4HM8 A;  2DE6 D;  3EN1 A;  2E74 D;  1P84 E;  2XSH A;  3VMH D;  1Q90 C;  4U3F E;  3N0Q A;  5CXM A;  1WW9 A;  1NU1 E;  4HKV A;  2NUM A;  4AAY B;  2D2C D;  2YFI A;  3L74 E;  4NBD D;  2B24 A;  1O7N A;  1Z01 A;  4QUQ A;  1UUW A;  3GCF A;  2E76 D;  2GBX A;  4NBC A;  2DE5 D;  3L75 E;  5BOK A;  1RFS A;  2BCC E;  4NBA D;  4QCK A;  3VMG D;  1NTZ E;  3GCE A;  3L72 E;  2HMO A;  1SQV E;  1Z02 A;  2HMJ A;  4HJL A;  4NB9 D;  3VMG A;  1BE3 E;  1O7G A;  4HM5 A;  1NTK E;  2BMO A;  1NYK A;  4NB8 A;  4NB9 A;  4P1C H;  1SQX E;  3H1I E;  3H1H E;  1ULI A;  1VCK A;  2Q3W A;  3GZY A;  3GZX A;  1SQB E;  3VCA A;  2JO6 A;  3D89 A;  4HM2 A;  4NBF A;  3VCP A;  3EQQ A;  2BMQ A;  3GOB A;  1SQP E;  4HM3 A;  2NVE A;  4PV1 D;  3L71 E;  1VF5 D;  5KKZ C;  2E75 D;  3H1K E;  1ZRT E;  4NBC D;  1JM1 A;  5KLI C;  1O7H A;  2XRX A;  2ZT9 D;  2QPZ A;  3GL0 A;  4NBE A;  1L0N E;  3GTS A;  1Z03 A;  4HM7 A;  2HMK A;  2QJK C;  4NBH D;  4NB8 D;  4HM1 A;  4H44 D;  1NTM E;  2YIU C;  4QUR A;  2CKF A;  3FOU A;  3GKQ A;  4NBH A;  2NWF A;  4P1B H;  5HL4 A;  3H1L E;  3VMI A;  4NBF D;  2NVG A;  4HM4 A;  2GBW A;  2HML A;  3GB4 A;  4QDF B;  2A06 E;  1G8J B;  1O7W A;  3L73 E;  4NBG D;  1WQL A;  1PP9 E;  2XR8 A;  2FYN C;  5AEU A;  2YFL A;  2DE7 D;  1G8K B;  1KB9 E;  4NBG A;  2ZYL A;  2DE7 A;  3H1J E;  3DQY A;  4NBE D;  3C0D A;  2JZA A;  3GTE A;  5KLV E;  4QDF A;  2IBZ E;  1UUV A;  3L70 E;  3CX5 E;  5AEW A;  2NVF A;  2FYU E;  1EG9 A;  2B1X A;  2HMN A;  4PD4 E;  3VMI D;  2BMR A;  2HMM A;  2DE6 A;  2XSO A;  4NBB D;  4H0L D;  4EMJ B;  2YVJ B;  3TGU E;  1ULJ A;  3VMH A;  2I7F A;  4NBB A;  3GL2 A;  2E4P A;  1KYO E;  2YFJ A;  1NDO A;  3CXH E;  3GKE A;  4QDC A;  3BCC E;  3CWB E;  4HM0 A;  4H13 D;  4NBD A;  3AZC A;  1VM9 A;  1O7P A;  4HM6 A;  4AIV A;  4QDD A;  1L0L E;  2QJP C;  2DE5 A;  1FQT A;  1SQQ E;  2QJY C;  4OGQ D;  4QUP A;  1SJG A;  1PPJ E;  1BCC E;  4NBA A;  1EZV E;  1O7M A; 
#chains in the Genus database with same CATH topology
 2E4Q A;  2NUK A;  1RIE A;  4HM8 A;  2DE6 D;  3EN1 A;  2E74 D;  1P84 E;  2XSH A;  3VMH D;  1Q90 C;  4U3F E;  3N0Q A;  5CXM A;  1WW9 A;  1NU1 E;  4HKV A;  2NUM A;  4AAY B;  2D2C D;  2YFI A;  3L74 E;  4NBD D;  2B24 A;  1O7N A;  1Z01 A;  4QUQ A;  1UUW A;  3GCF A;  2E76 D;  2GBX A;  4NBC A;  2DE5 D;  3L75 E;  5BOK A;  1RFS A;  2BCC E;  4NBA D;  4QCK A;  3VMG D;  1NTZ E;  3GCE A;  3L72 E;  2HMO A;  1SQV E;  1Z02 A;  2HMJ A;  4HJL A;  4NB9 D;  3VMG A;  1BE3 E;  1O7G A;  4HM5 A;  1NTK E;  2BMO A;  1NYK A;  4NB8 A;  4NB9 A;  4P1C H;  1SQX E;  3H1I E;  3H1H E;  1ULI A;  1VCK A;  2Q3W A;  3GZY A;  3GZX A;  1SQB E;  3VCA A;  2JO6 A;  3D89 A;  4HM2 A;  4NBF A;  3VCP A;  3EQQ A;  2BMQ A;  3GOB A;  1SQP E;  4HM3 A;  2NVE A;  4PV1 D;  3L71 E;  1VF5 D;  5KKZ C;  2E75 D;  3H1K E;  1ZRT E;  4NBC D;  1JM1 A;  5KLI C;  1O7H A;  2XRX A;  2ZT9 D;  2QPZ A;  3GL0 A;  4NBE A;  1L0N E;  3GTS A;  1Z03 A;  4HM7 A;  2HMK A;  2QJK C;  4NBH D;  4NB8 D;  4HM1 A;  4H44 D;  1NTM E;  2YIU C;  4QUR A;  2CKF A;  3FOU A;  3GKQ A;  4NBH A;  2NWF A;  4P1B H;  5HL4 A;  3H1L E;  3VMI A;  4NBF D;  2NVG A;  4HM4 A;  2GBW A;  2HML A;  3GB4 A;  4QDF B;  2A06 E;  1G8J B;  1O7W A;  3L73 E;  4NBG D;  1WQL A;  1PP9 E;  2XR8 A;  2FYN C;  5AEU A;  2YFL A;  2DE7 D;  1G8K B;  1KB9 E;  4NBG A;  2ZYL A;  2DE7 A;  3H1J E;  3DQY A;  4NBE D;  3C0D A;  2JZA A;  3GTE A;  5KLV E;  4QDF A;  2IBZ E;  1UUV A;  3L70 E;  3CX5 E;  5AEW A;  2NVF A;  2FYU E;  1EG9 A;  2B1X A;  2HMN A;  4PD4 E;  3VMI D;  2BMR A;  2HMM A;  2DE6 A;  2XSO A;  4NBB D;  4H0L D;  4EMJ B;  2YVJ B;  3TGU E;  1ULJ A;  3VMH A;  2I7F A;  4NBB A;  3GL2 A;  2E4P A;  1KYO E;  2YFJ A;  1NDO A;  3CXH E;  3GKE A;  4QDC A;  3BCC E;  3CWB E;  4HM0 A;  4H13 D;  4NBD A;  3AZC A;  1VM9 A;  1O7P A;  4HM6 A;  4AIV A;  4QDD A;  1L0L E;  2QJP C;  2DE5 A;  1FQT A;  1SQQ E;  2QJY C;  4OGQ D;  4QUP A;  1SJG A;  1PPJ E;  1BCC E;  4NBA A;  1EZV E;  1O7M A; 
#chains in the Genus database with same CATH homology
 2E4Q A;  2NUK A;  1RIE A;  4HM8 A;  2DE6 D;  3EN1 A;  2E74 D;  1P84 E;  2XSH A;  3VMH D;  1Q90 C;  4U3F E;  3N0Q A;  5CXM A;  1WW9 A;  1NU1 E;  4HKV A;  2NUM A;  4AAY B;  2D2C D;  2YFI A;  3L74 E;  4NBD D;  2B24 A;  1O7N A;  1Z01 A;  4QUQ A;  1UUW A;  3GCF A;  2E76 D;  2GBX A;  4NBC A;  2DE5 D;  3L75 E;  5BOK A;  1RFS A;  2BCC E;  4NBA D;  4QCK A;  3VMG D;  1NTZ E;  3GCE A;  3L72 E;  2HMO A;  1SQV E;  1Z02 A;  2HMJ A;  4HJL A;  4NB9 D;  3VMG A;  1BE3 E;  1O7G A;  4HM5 A;  1NTK E;  2BMO A;  1NYK A;  4NB8 A;  4NB9 A;  4P1C H;  1SQX E;  3H1I E;  3H1H E;  1ULI A;  1VCK A;  2Q3W A;  3GZY A;  3GZX A;  1SQB E;  3VCA A;  2JO6 A;  3D89 A;  4HM2 A;  4NBF A;  3VCP A;  3EQQ A;  2BMQ A;  3GOB A;  1SQP E;  4HM3 A;  2NVE A;  4PV1 D;  3L71 E;  1VF5 D;  5KKZ C;  2E75 D;  3H1K E;  1ZRT E;  4NBC D;  1JM1 A;  5KLI C;  1O7H A;  2XRX A;  2ZT9 D;  2QPZ A;  3GL0 A;  4NBE A;  1L0N E;  3GTS A;  1Z03 A;  4HM7 A;  2HMK A;  2QJK C;  4NBH D;  4NB8 D;  4HM1 A;  4H44 D;  1NTM E;  2YIU C;  4QUR A;  2CKF A;  3FOU A;  3GKQ A;  4NBH A;  2NWF A;  4P1B H;  5HL4 A;  3H1L E;  3VMI A;  4NBF D;  2NVG A;  4HM4 A;  2GBW A;  2HML A;  3GB4 A;  4QDF B;  2A06 E;  1G8J B;  1O7W A;  3L73 E;  4NBG D;  1WQL A;  1PP9 E;  2XR8 A;  2FYN C;  5AEU A;  2YFL A;  2DE7 D;  1G8K B;  1KB9 E;  4NBG A;  2ZYL A;  2DE7 A;  3H1J E;  3DQY A;  4NBE D;  3C0D A;  2JZA A;  3GTE A;  5KLV E;  4QDF A;  2IBZ E;  1UUV A;  3L70 E;  3CX5 E;  5AEW A;  2NVF A;  2FYU E;  1EG9 A;  2B1X A;  2HMN A;  4PD4 E;  3VMI D;  2BMR A;  2HMM A;  2DE6 A;  2XSO A;  4NBB D;  4H0L D;  4EMJ B;  2YVJ B;  3TGU E;  1ULJ A;  3VMH A;  2I7F A;  4NBB A;  3GL2 A;  2E4P A;  1KYO E;  2YFJ A;  1NDO A;  3CXH E;  3GKE A;  4QDC A;  3BCC E;  3CWB E;  4HM0 A;  4H13 D;  4NBD A;  3AZC A;  1VM9 A;  1O7P A;  4HM6 A;  4AIV A;  4QDD A;  1L0L E;  2QJP C;  2DE5 A;  1FQT A;  1SQQ E;  2QJY C;  4OGQ D;  4QUP A;  1SJG A;  1PPJ E;  1BCC E;  4NBA A;  1EZV E;  1O7M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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