2BMOA

The crystal structure of nitrobenzene dioxygenase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
437
structure length
437
Chain Sequence
b'YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords OXYGENASE-ALPHA NBDO
publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
source organism Comamonas sp.
molecule tags Oxidoreductase
total genus 157
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmoA01
2D2CD 3D89A 2BMQA 1ULJA 1L0NE 2YVJB 1O7MA 2BMRA 3H1HE 1SQPE 4NB9A 1SQQE 3VMHD 4NBFD 1RFSA 1RIEA 3GB4A 3GCEA 4HM6A 3VCAA 4NBAD 2HMOA 3AZCA 4H44D 2XSOA 2QJPC 3L73E 2ZYLA 3GOBA 2YFIA 1VF5D 2HMKA 2XRXA 4NBFA 1PP9E 4NBAA 4HM2A 1Z02A 3N0QA 4NBGD 3GCFA 1O7GA 4H0LD 4QCKA 2XSHA 3VMGD 2FYNC 1G8JB 2QJKC 2YIUC 4QDFA 4OGQD 1UUWA 5KKZC 3L71E 3EQQA 4NB8D 3GKQA 1JM1A 3H1JE 4NBGA 2NVFA 2I7FA 3GTSA 4NBBD 3VMGA 2JZAA 3GZXA 4HJLA 2HMMA 2ZT9D 5KLVE 1NU1E 1BCCE 2E4PA 2DE5D 2Q3WA 3L75E 4HM0A 4NB8A 4HM7A 2HMNA 5CXMA 1Z03A 1ZRTE 4NBBA 2YFJA 3VMHA 4NBCD 1SJGA 2DE7D 2DE5A 2NWFA 3FOUA 4PD4E 1Z01A 1PPJE 5HL4A 4HM4A 4QDCA 3L72E 3GZYA 4HM1A 1VCKA 4QUPA 3CXHE 4HM3A 4NBCA 4AAYB 3DQYA 2DE7A 3H1KE 2GBWA 3GL0A 1NTZE 2HMLA 1G8KB 3L70E 1KB9E 4HM5A 2QJYC 4H13D 4NBDD 4AIVA 1P84E 4EMJB 1WW9A 1WQLA 2XR8A 4NBHD 3VMID 3TGUE 2YFLA 1VM9A 2NUKA 2E75D 1NTKE 3C0DA 4QDFB 4QURA 4NBDA 1FQTA 3GTEA 4NBED 3EN1A 3L74E 2IBZE 4NBHA 3VMIA 2NUMA 2CKFA 3H1IE 2NVGA 2B1XA 1O7WA 4NBEA 4PV1D 1NDOA 2GBXA 2E74D 1L0LE 2DE6D 4P1BH 4P1CH 1SQBE 1EG9A 1O7PA 3GL2A 2BMOA 1Q90C 4HM8A 2FYUE 2DE6A 4HKVA 5AEUA 2NVEA 2BCCE 3CWBE 1ULIA 3GKEA 2E76D 4QDDA 2JO6A 1SQXE 3CX5E 1UUVA 1O7HA 1NYKA 3H1LE 5AEWA 2A06E 2QPZA 2E4QA 1EZVE 5BOKA 2B24A 4QUQA 4NB9D 1BE3E 1KYOE 3BCCE 4U3FE 5KLIC 1NTME 1O7NA 2HMJA 3VCPA 1SQVE
chains in the Genus database with same CATH superfamily
2D2CD 3D89A 2BMQA 1ULJA 1L0NE 2YVJB 1O7MA 2BMRA 3H1HE 1SQPE 4NB9A 1SQQE 3VMHD 4NBFD 1RFSA 1RIEA 3GB4A 3GCEA 4HM6A 3VCAA 4NBAD 2HMOA 3AZCA 4H44D 2XSOA 2QJPC 3L73E 2ZYLA 3GOBA 2YFIA 1VF5D 2HMKA 2XRXA 4NBFA 1PP9E 4NBAA 4HM2A 1Z02A 3N0QA 4NBGD 3GCFA 1O7GA 4H0LD 4QCKA 2XSHA 3VMGD 2FYNC 1G8JB 2QJKC 2YIUC 4QDFA 4OGQD 1UUWA 5KKZC 3L71E 3EQQA 4NB8D 3GKQA 1JM1A 3H1JE 4NBGA 2NVFA 2I7FA 3GTSA 4NBBD 3VMGA 2JZAA 3GZXA 4HJLA 2HMMA 2ZT9D 5KLVE 1NU1E 1BCCE 2E4PA 2DE5D 2Q3WA 3L75E 4HM0A 4NB8A 4HM7A 2HMNA 5CXMA 1Z03A 1ZRTE 4NBBA 2YFJA 3VMHA 4NBCD 1SJGA 2DE7D 2DE5A 2NWFA 3FOUA 4PD4E 1Z01A 1PPJE 5HL4A 4HM4A 4QDCA 3L72E 3GZYA 4HM1A 1VCKA 4QUPA 3CXHE 4HM3A 4NBCA 4AAYB 3DQYA 2DE7A 3H1KE 2GBWA 3GL0A 1NTZE 2HMLA 1G8KB 3L70E 1KB9E 4HM5A 2QJYC 4H13D 4NBDD 4AIVA 1P84E 4EMJB 1WW9A 1WQLA 2XR8A 4NBHD 3VMID 3TGUE 2YFLA 1VM9A 2NUKA 2E75D 1NTKE 3C0DA 4QDFB 4QURA 4NBDA 1FQTA 3GTEA 4NBED 3EN1A 3L74E 2IBZE 4NBHA 3VMIA 2NUMA 2CKFA 3H1IE 2NVGA 2B1XA 1O7WA 4NBEA 4PV1D 1NDOA 2GBXA 2E74D 1L0LE 2DE6D 4P1BH 4P1CH 1SQBE 1EG9A 1O7PA 3GL2A 2BMOA 1Q90C 4HM8A 2FYUE 2DE6A 4HKVA 5AEUA 2NVEA 2BCCE 3CWBE 1ULIA 3GKEA 2E76D 4QDDA 2JO6A 1SQXE 3CX5E 1UUVA 1O7HA 1NYKA 3H1LE 5AEWA 2A06E 2QPZA 2E4QA 1EZVE 5BOKA 2B24A 4QUQA 4NB9D 1BE3E 1KYOE 3BCCE 4U3FE 5KLIC 1NTME 1O7NA 2HMJA 3VCPA 1SQVE
chains in the Genus database with same CATH topology
2D2CD 3D89A 2BMQA 1ULJA 1L0NE 2YVJB 1O7MA 2BMRA 3H1HE 1SQPE 4NB9A 1SQQE 3VMHD 4NBFD 1RFSA 1RIEA 3GB4A 3GCEA 4HM6A 3VCAA 4NBAD 2HMOA 3AZCA 4H44D 2XSOA 2QJPC 3L73E 2ZYLA 3GOBA 2YFIA 1VF5D 2HMKA 2XRXA 4NBFA 1PP9E 4NBAA 4HM2A 1Z02A 3N0QA 4NBGD 3GCFA 1O7GA 4H0LD 4QCKA 2XSHA 3VMGD 2FYNC 1G8JB 2QJKC 2YIUC 4QDFA 4OGQD 1UUWA 5KKZC 3L71E 3EQQA 4NB8D 3GKQA 1JM1A 3H1JE 4NBGA 2NVFA 2I7FA 3GTSA 4NBBD 3VMGA 2JZAA 3GZXA 4HJLA 2HMMA 2ZT9D 5KLVE 1NU1E 1BCCE 2E4PA 2DE5D 2Q3WA 3L75E 4HM0A 4NB8A 4HM7A 2HMNA 5CXMA 1Z03A 1ZRTE 4NBBA 2YFJA 3VMHA 4NBCD 1SJGA 2DE7D 2DE5A 2NWFA 3FOUA 4PD4E 1Z01A 1PPJE 5HL4A 4HM4A 4QDCA 3L72E 3GZYA 4HM1A 1VCKA 4QUPA 3CXHE 4HM3A 4NBCA 4AAYB 3DQYA 2DE7A 3H1KE 2GBWA 3GL0A 1NTZE 2HMLA 1G8KB 3L70E 1KB9E 4HM5A 2QJYC 4H13D 4NBDD 4AIVA 1P84E 4EMJB 1WW9A 1WQLA 2XR8A 4NBHD 3VMID 3TGUE 2YFLA 1VM9A 2NUKA 2E75D 1NTKE 3C0DA 4QDFB 4QURA 4NBDA 1FQTA 3GTEA 4NBED 3EN1A 3L74E 2IBZE 4NBHA 3VMIA 2NUMA 2CKFA 3H1IE 2NVGA 2B1XA 1O7WA 4NBEA 4PV1D 1NDOA 2GBXA 2E74D 1L0LE 2DE6D 4P1BH 4P1CH 1SQBE 1EG9A 1O7PA 3GL2A 2BMOA 1Q90C 4HM8A 2FYUE 2DE6A 4HKVA 5AEUA 2NVEA 2BCCE 3CWBE 1ULIA 3GKEA 2E76D 4QDDA 2JO6A 1SQXE 3CX5E 1UUVA 1O7HA 1NYKA 3H1LE 5AEWA 2A06E 2QPZA 2E4QA 1EZVE 5BOKA 2B24A 4QUQA 4NB9D 1BE3E 1KYOE 3BCCE 4U3FE 5KLIC 1NTME 1O7NA 2HMJA 3VCPA 1SQVE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D2C D;  3D89 A;  2BMQ A;  1ULJ A;  1L0N E;  2YVJ B;  1O7M A;  2BMR A;  3H1H E;  1SQP E;  4NB9 A;  1SQQ E;  3VMH D;  4NBF D;  1RFS A;  1RIE A;  3GB4 A;  3GCE A;  4HM6 A;  3VCA A;  4NBA D;  2HMO A;  3AZC A;  4H44 D;  2XSO A;  2QJP C;  3L73 E;  2ZYL A;  3GOB A;  2YFI A;  1VF5 D;  2HMK A;  2XRX A;  4NBF A;  1PP9 E;  4NBA A;  4HM2 A;  1Z02 A;  3N0Q A;  4NBG D;  3GCF A;  1O7G A;  4H0L D;  4QCK A;  2XSH A;  3VMG D;  2FYN C;  1G8J B;  2QJK C;  2YIU C;  4QDF A;  4OGQ D;  1UUW A;  5KKZ C;  3L71 E;  3EQQ A;  4NB8 D;  3GKQ A;  1JM1 A;  3H1J E;  4NBG A;  2NVF A;  2I7F A;  3GTS A;  4NBB D;  3VMG A;  2JZA A;  3GZX A;  4HJL A;  2HMM A;  2ZT9 D;  5KLV E;  1NU1 E;  1BCC E;  2E4P A;  2DE5 D;  2Q3W A;  3L75 E;  4HM0 A;  4NB8 A;  4HM7 A;  2HMN A;  5CXM A;  1Z03 A;  1ZRT E;  4NBB A;  2YFJ A;  3VMH A;  4NBC D;  1SJG A;  2DE7 D;  2DE5 A;  2NWF A;  3FOU A;  4PD4 E;  1Z01 A;  1PPJ E;  5HL4 A;  4HM4 A;  4QDC A;  3L72 E;  3GZY A;  4HM1 A;  1VCK A;  4QUP A;  3CXH E;  4HM3 A;  4NBC A;  4AAY B;  3DQY A;  2DE7 A;  3H1K E;  2GBW A;  3GL0 A;  1NTZ E;  2HML A;  1G8K B;  3L70 E;  1KB9 E;  4HM5 A;  2QJY C;  4H13 D;  4NBD D;  4AIV A;  1P84 E;  4EMJ B;  1WW9 A;  1WQL A;  2XR8 A;  4NBH D;  3VMI D;  3TGU E;  2YFL A;  1VM9 A;  2NUK A;  2E75 D;  1NTK E;  3C0D A;  4QDF B;  4QUR A;  4NBD A;  1FQT A;  3GTE A;  4NBE D;  3EN1 A;  3L74 E;  2IBZ E;  4NBH A;  3VMI A;  2NUM A;  2CKF A;  3H1I E;  2NVG A;  2B1X A;  1O7W A;  4NBE A;  4PV1 D;  1NDO A;  2GBX A;  2E74 D;  1L0L E;  2DE6 D;  4P1B H;  4P1C H;  1SQB E;  1EG9 A;  1O7P A;  3GL2 A;  2BMO A;  1Q90 C;  4HM8 A;  2FYU E;  2DE6 A;  4HKV A;  5AEU A;  2NVE A;  2BCC E;  3CWB E;  1ULI A;  3GKE A;  2E76 D;  4QDD A;  2JO6 A;  1SQX E;  3CX5 E;  1UUV A;  1O7H A;  1NYK A;  3H1L E;  5AEW A;  2A06 E;  2QPZ A;  2E4Q A;  1EZV E;  5BOK A;  2B24 A;  4QUQ A;  4NB9 D;  1BE3 E;  1KYO E;  3BCC E;  4U3F E;  5KLI C;  1NTM E;  1O7N A;  2HMJ A;  3VCP A;  1SQV E; 
#chains in the Genus database with same CATH topology
 2D2C D;  3D89 A;  2BMQ A;  1ULJ A;  1L0N E;  2YVJ B;  1O7M A;  2BMR A;  3H1H E;  1SQP E;  4NB9 A;  1SQQ E;  3VMH D;  4NBF D;  1RFS A;  1RIE A;  3GB4 A;  3GCE A;  4HM6 A;  3VCA A;  4NBA D;  2HMO A;  3AZC A;  4H44 D;  2XSO A;  2QJP C;  3L73 E;  2ZYL A;  3GOB A;  2YFI A;  1VF5 D;  2HMK A;  2XRX A;  4NBF A;  1PP9 E;  4NBA A;  4HM2 A;  1Z02 A;  3N0Q A;  4NBG D;  3GCF A;  1O7G A;  4H0L D;  4QCK A;  2XSH A;  3VMG D;  2FYN C;  1G8J B;  2QJK C;  2YIU C;  4QDF A;  4OGQ D;  1UUW A;  5KKZ C;  3L71 E;  3EQQ A;  4NB8 D;  3GKQ A;  1JM1 A;  3H1J E;  4NBG A;  2NVF A;  2I7F A;  3GTS A;  4NBB D;  3VMG A;  2JZA A;  3GZX A;  4HJL A;  2HMM A;  2ZT9 D;  5KLV E;  1NU1 E;  1BCC E;  2E4P A;  2DE5 D;  2Q3W A;  3L75 E;  4HM0 A;  4NB8 A;  4HM7 A;  2HMN A;  5CXM A;  1Z03 A;  1ZRT E;  4NBB A;  2YFJ A;  3VMH A;  4NBC D;  1SJG A;  2DE7 D;  2DE5 A;  2NWF A;  3FOU A;  4PD4 E;  1Z01 A;  1PPJ E;  5HL4 A;  4HM4 A;  4QDC A;  3L72 E;  3GZY A;  4HM1 A;  1VCK A;  4QUP A;  3CXH E;  4HM3 A;  4NBC A;  4AAY B;  3DQY A;  2DE7 A;  3H1K E;  2GBW A;  3GL0 A;  1NTZ E;  2HML A;  1G8K B;  3L70 E;  1KB9 E;  4HM5 A;  2QJY C;  4H13 D;  4NBD D;  4AIV A;  1P84 E;  4EMJ B;  1WW9 A;  1WQL A;  2XR8 A;  4NBH D;  3VMI D;  3TGU E;  2YFL A;  1VM9 A;  2NUK A;  2E75 D;  1NTK E;  3C0D A;  4QDF B;  4QUR A;  4NBD A;  1FQT A;  3GTE A;  4NBE D;  3EN1 A;  3L74 E;  2IBZ E;  4NBH A;  3VMI A;  2NUM A;  2CKF A;  3H1I E;  2NVG A;  2B1X A;  1O7W A;  4NBE A;  4PV1 D;  1NDO A;  2GBX A;  2E74 D;  1L0L E;  2DE6 D;  4P1B H;  4P1C H;  1SQB E;  1EG9 A;  1O7P A;  3GL2 A;  2BMO A;  1Q90 C;  4HM8 A;  2FYU E;  2DE6 A;  4HKV A;  5AEU A;  2NVE A;  2BCC E;  3CWB E;  1ULI A;  3GKE A;  2E76 D;  4QDD A;  2JO6 A;  1SQX E;  3CX5 E;  1UUV A;  1O7H A;  1NYK A;  3H1L E;  5AEW A;  2A06 E;  2QPZ A;  2E4Q A;  1EZV E;  5BOK A;  2B24 A;  4QUQ A;  4NB9 D;  1BE3 E;  1KYO E;  3BCC E;  4U3F E;  5KLI C;  1NTM E;  1O7N A;  2HMJ A;  3VCP A;  1SQV E; 
#chains in the Genus database with same CATH homology
 2D2C D;  3D89 A;  2BMQ A;  1ULJ A;  1L0N E;  2YVJ B;  1O7M A;  2BMR A;  3H1H E;  1SQP E;  4NB9 A;  1SQQ E;  3VMH D;  4NBF D;  1RFS A;  1RIE A;  3GB4 A;  3GCE A;  4HM6 A;  3VCA A;  4NBA D;  2HMO A;  3AZC A;  4H44 D;  2XSO A;  2QJP C;  3L73 E;  2ZYL A;  3GOB A;  2YFI A;  1VF5 D;  2HMK A;  2XRX A;  4NBF A;  1PP9 E;  4NBA A;  4HM2 A;  1Z02 A;  3N0Q A;  4NBG D;  3GCF A;  1O7G A;  4H0L D;  4QCK A;  2XSH A;  3VMG D;  2FYN C;  1G8J B;  2QJK C;  2YIU C;  4QDF A;  4OGQ D;  1UUW A;  5KKZ C;  3L71 E;  3EQQ A;  4NB8 D;  3GKQ A;  1JM1 A;  3H1J E;  4NBG A;  2NVF A;  2I7F A;  3GTS A;  4NBB D;  3VMG A;  2JZA A;  3GZX A;  4HJL A;  2HMM A;  2ZT9 D;  5KLV E;  1NU1 E;  1BCC E;  2E4P A;  2DE5 D;  2Q3W A;  3L75 E;  4HM0 A;  4NB8 A;  4HM7 A;  2HMN A;  5CXM A;  1Z03 A;  1ZRT E;  4NBB A;  2YFJ A;  3VMH A;  4NBC D;  1SJG A;  2DE7 D;  2DE5 A;  2NWF A;  3FOU A;  4PD4 E;  1Z01 A;  1PPJ E;  5HL4 A;  4HM4 A;  4QDC A;  3L72 E;  3GZY A;  4HM1 A;  1VCK A;  4QUP A;  3CXH E;  4HM3 A;  4NBC A;  4AAY B;  3DQY A;  2DE7 A;  3H1K E;  2GBW A;  3GL0 A;  1NTZ E;  2HML A;  1G8K B;  3L70 E;  1KB9 E;  4HM5 A;  2QJY C;  4H13 D;  4NBD D;  4AIV A;  1P84 E;  4EMJ B;  1WW9 A;  1WQL A;  2XR8 A;  4NBH D;  3VMI D;  3TGU E;  2YFL A;  1VM9 A;  2NUK A;  2E75 D;  1NTK E;  3C0D A;  4QDF B;  4QUR A;  4NBD A;  1FQT A;  3GTE A;  4NBE D;  3EN1 A;  3L74 E;  2IBZ E;  4NBH A;  3VMI A;  2NUM A;  2CKF A;  3H1I E;  2NVG A;  2B1X A;  1O7W A;  4NBE A;  4PV1 D;  1NDO A;  2GBX A;  2E74 D;  1L0L E;  2DE6 D;  4P1B H;  4P1C H;  1SQB E;  1EG9 A;  1O7P A;  3GL2 A;  2BMO A;  1Q90 C;  4HM8 A;  2FYU E;  2DE6 A;  4HKV A;  5AEU A;  2NVE A;  2BCC E;  3CWB E;  1ULI A;  3GKE A;  2E76 D;  4QDD A;  2JO6 A;  1SQX E;  3CX5 E;  1UUV A;  1O7H A;  1NYK A;  3H1L E;  5AEW A;  2A06 E;  2QPZ A;  2E4Q A;  1EZV E;  5BOK A;  2B24 A;  4QUQ A;  4NB9 D;  1BE3 E;  1KYO E;  3BCC E;  4U3F E;  5KLI C;  1NTM E;  1O7N A;  2HMJ A;  3VCP A;  1SQV E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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