2BMOA

The crystal structure of nitrobenzene dioxygenase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
437
structure length
437
Chain Sequence
b'YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
molecule keywords OXYGENASE-ALPHA NBDO
source organism Comamonas sp.
molecule tags Oxidoreductase
total genus 157
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmoA01
1G8KB 2B1XA 4NBEA 2D2CD 4AIVA 1VF5D 4HM0A 1ULIA 3H1IE 1JM1A 3C0DA 4HKVA 2GBWA 4U3FE 4HM3A 1Z03A 4QUQA 1NTME 4HM8A 1BCCE 3N0QA 2YIUC 2YFIA 1SQVE 1WQLA 4PV1D 1KB9E 2HMNA 2DE6A 3H1LE 1EG9A 4QDFB 1Z02A 1O7WA 1FQTA 4QCKA 4EMJB 4NBAD 1SQPE 1O7NA 2HMLA 3GZYA 2I7FA 4H0LD 2XR8A 4NBDA 4QUPA 1NU1E 4NBFA 2XSOA 3EQQA 3VMID 3CX5E 3H1KE 1ZRTE 3VMHD 2NWFA 4NBHD 2NVGA 2YFLA 4NB8D 2IBZE 2NUMA 1UUVA 1Q90C 2FYUE 3H1JE 1SJGA 1SQBE 3L71E 2DE5A 4NBGD 1NYKA 3L74E 2A06E 3AZCA 3GL0A 3GL2A 4NB9D 2Q3WA 2JZAA 2GBXA 3GB4A 1WW9A 4HJLA 4QDDA 1SQQE 2XSHA 3EN1A 4HM4A 3GCEA 3D89A 4HM2A 1P84E 4NBCD 1G8JB 1PPJE 2HMJA 3VCPA 2BMQA 4AAYB 4QDFA 5KLIC 3L72E 4P1BH 3GOBA 1L0NE 2CKFA 2BCCE 4NBBD 3GTSA 1SQXE 4P1CH 3VCAA 1RFSA 3DQYA 3GKQA 1O7HA 2YVJB 4HM5A 2BMRA 3L75E 4NBED 1O7MA 2QJKC 1KYOE 3FOUA 1NDOA 4NBAA 2ZT9D 3L70E 2E4PA 2DE7D 5HL4A 4OGQD 5KKZC 1NTKE 1VCKA 4H44D 4PD4E 5AEUA 2E74D 1Z01A 2E76D 2B24A 3BCCE 4QURA 3H1HE 4H13D 3VMIA 3GZXA 1UUWA 1BE3E 2E75D 4NBHA 1L0LE 1PP9E 2DE6D 4NB8A 3VMHA 4HM6A 2QPZA 1EZVE 2E4QA 3GTEA 2HMKA 2QJYC 3VMGD 5KLVE 3CWBE 4NBDD 2NUKA 2YFJA 4HM1A 2NVEA 4HM7A 3TGUE 2DE7A 4NBGA 4NB9A 4NBFD 2NVFA 2QJPC 1O7PA 2HMMA 1VM9A 5AEWA 1ULJA 2BMOA 3CXHE 5BOKA 1O7GA 4NBCA 2ZYLA 1NTZE 4QDCA 3GCFA 2JO6A 2XRXA 3VMGA 1RIEA 2HMOA 2DE5D 3L73E 5CXMA 4NBBA 3GKEA 2FYNC
chains in the Genus database with same CATH superfamily
1G8KB 2B1XA 4NBEA 2D2CD 4AIVA 1VF5D 4HM0A 1ULIA 3H1IE 1JM1A 3C0DA 4HKVA 2GBWA 4U3FE 4HM3A 1Z03A 4QUQA 1NTME 4HM8A 1BCCE 3N0QA 2YIUC 2YFIA 1SQVE 1WQLA 4PV1D 1KB9E 2HMNA 2DE6A 3H1LE 1EG9A 4QDFB 1Z02A 1O7WA 1FQTA 4QCKA 4EMJB 4NBAD 1SQPE 1O7NA 2HMLA 3GZYA 2I7FA 4H0LD 2XR8A 4NBDA 4QUPA 1NU1E 4NBFA 2XSOA 3EQQA 3VMID 3CX5E 3H1KE 1ZRTE 3VMHD 2NWFA 4NBHD 2NVGA 2YFLA 4NB8D 2IBZE 2NUMA 1UUVA 1Q90C 2FYUE 3H1JE 1SJGA 1SQBE 3L71E 2DE5A 4NBGD 1NYKA 3L74E 2A06E 3AZCA 3GL0A 3GL2A 4NB9D 2Q3WA 2JZAA 2GBXA 3GB4A 1WW9A 4HJLA 4QDDA 1SQQE 2XSHA 3EN1A 4HM4A 3GCEA 3D89A 4HM2A 1P84E 4NBCD 1G8JB 1PPJE 2HMJA 3VCPA 2BMQA 4AAYB 4QDFA 5KLIC 3L72E 4P1BH 3GOBA 1L0NE 2CKFA 2BCCE 4NBBD 3GTSA 1SQXE 4P1CH 3VCAA 1RFSA 3DQYA 3GKQA 1O7HA 2YVJB 4HM5A 2BMRA 3L75E 4NBED 1O7MA 2QJKC 1KYOE 3FOUA 1NDOA 4NBAA 2ZT9D 3L70E 2E4PA 2DE7D 5HL4A 4OGQD 5KKZC 1NTKE 1VCKA 4H44D 4PD4E 5AEUA 2E74D 1Z01A 2E76D 2B24A 3BCCE 4QURA 3H1HE 4H13D 3VMIA 3GZXA 1UUWA 1BE3E 2E75D 4NBHA 1L0LE 1PP9E 2DE6D 4NB8A 3VMHA 4HM6A 2QPZA 1EZVE 2E4QA 3GTEA 2HMKA 2QJYC 3VMGD 5KLVE 3CWBE 4NBDD 2NUKA 2YFJA 4HM1A 2NVEA 4HM7A 3TGUE 2DE7A 4NBGA 4NB9A 4NBFD 2NVFA 2QJPC 1O7PA 2HMMA 1VM9A 5AEWA 1ULJA 2BMOA 3CXHE 5BOKA 1O7GA 4NBCA 2ZYLA 1NTZE 4QDCA 3GCFA 2JO6A 2XRXA 3VMGA 1RIEA 2HMOA 2DE5D 3L73E 5CXMA 4NBBA 3GKEA 2FYNC
chains in the Genus database with same CATH topology
1G8KB 2B1XA 4NBEA 2D2CD 4AIVA 1VF5D 4HM0A 1ULIA 3H1IE 1JM1A 3C0DA 4HKVA 2GBWA 4U3FE 4HM3A 1Z03A 4QUQA 1NTME 4HM8A 1BCCE 3N0QA 2YIUC 2YFIA 1SQVE 1WQLA 4PV1D 1KB9E 2HMNA 2DE6A 3H1LE 1EG9A 4QDFB 1Z02A 1O7WA 1FQTA 4QCKA 4EMJB 4NBAD 1SQPE 1O7NA 2HMLA 3GZYA 2I7FA 4H0LD 2XR8A 4NBDA 4QUPA 1NU1E 4NBFA 2XSOA 3EQQA 3VMID 3CX5E 3H1KE 1ZRTE 3VMHD 2NWFA 4NBHD 2NVGA 2YFLA 4NB8D 2IBZE 2NUMA 1UUVA 1Q90C 2FYUE 3H1JE 1SJGA 1SQBE 3L71E 2DE5A 4NBGD 1NYKA 3L74E 2A06E 3AZCA 3GL0A 3GL2A 4NB9D 2Q3WA 2JZAA 2GBXA 3GB4A 1WW9A 4HJLA 4QDDA 1SQQE 2XSHA 3EN1A 4HM4A 3GCEA 3D89A 4HM2A 1P84E 4NBCD 1G8JB 1PPJE 2HMJA 3VCPA 2BMQA 4AAYB 4QDFA 5KLIC 3L72E 4P1BH 3GOBA 1L0NE 2CKFA 2BCCE 4NBBD 3GTSA 1SQXE 4P1CH 3VCAA 1RFSA 3DQYA 3GKQA 1O7HA 2YVJB 4HM5A 2BMRA 3L75E 4NBED 1O7MA 2QJKC 1KYOE 3FOUA 1NDOA 4NBAA 2ZT9D 3L70E 2E4PA 2DE7D 5HL4A 4OGQD 5KKZC 1NTKE 1VCKA 4H44D 4PD4E 5AEUA 2E74D 1Z01A 2E76D 2B24A 3BCCE 4QURA 3H1HE 4H13D 3VMIA 3GZXA 1UUWA 1BE3E 2E75D 4NBHA 1L0LE 1PP9E 2DE6D 4NB8A 3VMHA 4HM6A 2QPZA 1EZVE 2E4QA 3GTEA 2HMKA 2QJYC 3VMGD 5KLVE 3CWBE 4NBDD 2NUKA 2YFJA 4HM1A 2NVEA 4HM7A 3TGUE 2DE7A 4NBGA 4NB9A 4NBFD 2NVFA 2QJPC 1O7PA 2HMMA 1VM9A 5AEWA 1ULJA 2BMOA 3CXHE 5BOKA 1O7GA 4NBCA 2ZYLA 1NTZE 4QDCA 3GCFA 2JO6A 2XRXA 3VMGA 1RIEA 2HMOA 2DE5D 3L73E 5CXMA 4NBBA 3GKEA 2FYNC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G8K B;  2B1X A;  4NBE A;  2D2C D;  4AIV A;  1VF5 D;  4HM0 A;  1ULI A;  3H1I E;  1JM1 A;  3C0D A;  4HKV A;  2GBW A;  4U3F E;  4HM3 A;  1Z03 A;  4QUQ A;  1NTM E;  4HM8 A;  1BCC E;  3N0Q A;  2YIU C;  2YFI A;  1SQV E;  1WQL A;  4PV1 D;  1KB9 E;  2HMN A;  2DE6 A;  3H1L E;  1EG9 A;  4QDF B;  1Z02 A;  1O7W A;  1FQT A;  4QCK A;  4EMJ B;  4NBA D;  1SQP E;  1O7N A;  2HML A;  3GZY A;  2I7F A;  4H0L D;  2XR8 A;  4NBD A;  4QUP A;  1NU1 E;  4NBF A;  2XSO A;  3EQQ A;  3VMI D;  3CX5 E;  3H1K E;  1ZRT E;  3VMH D;  2NWF A;  4NBH D;  2NVG A;  2YFL A;  4NB8 D;  2IBZ E;  2NUM A;  1UUV A;  1Q90 C;  2FYU E;  3H1J E;  1SJG A;  1SQB E;  3L71 E;  2DE5 A;  4NBG D;  1NYK A;  3L74 E;  2A06 E;  3AZC A;  3GL0 A;  3GL2 A;  4NB9 D;  2Q3W A;  2JZA A;  2GBX A;  3GB4 A;  1WW9 A;  4HJL A;  4QDD A;  1SQQ E;  2XSH A;  3EN1 A;  4HM4 A;  3GCE A;  3D89 A;  4HM2 A;  1P84 E;  4NBC D;  1G8J B;  1PPJ E;  2HMJ A;  3VCP A;  2BMQ A;  4AAY B;  4QDF A;  5KLI C;  3L72 E;  4P1B H;  3GOB A;  1L0N E;  2CKF A;  2BCC E;  4NBB D;  3GTS A;  1SQX E;  4P1C H;  3VCA A;  1RFS A;  3DQY A;  3GKQ A;  1O7H A;  2YVJ B;  4HM5 A;  2BMR A;  3L75 E;  4NBE D;  1O7M A;  2QJK C;  1KYO E;  3FOU A;  1NDO A;  4NBA A;  2ZT9 D;  3L70 E;  2E4P A;  2DE7 D;  5HL4 A;  4OGQ D;  5KKZ C;  1NTK E;  1VCK A;  4H44 D;  4PD4 E;  5AEU A;  2E74 D;  1Z01 A;  2E76 D;  2B24 A;  3BCC E;  4QUR A;  3H1H E;  4H13 D;  3VMI A;  3GZX A;  1UUW A;  1BE3 E;  2E75 D;  4NBH A;  1L0L E;  1PP9 E;  2DE6 D;  4NB8 A;  3VMH A;  4HM6 A;  2QPZ A;  1EZV E;  2E4Q A;  3GTE A;  2HMK A;  2QJY C;  3VMG D;  5KLV E;  3CWB E;  4NBD D;  2NUK A;  2YFJ A;  4HM1 A;  2NVE A;  4HM7 A;  3TGU E;  2DE7 A;  4NBG A;  4NB9 A;  4NBF D;  2NVF A;  2QJP C;  1O7P A;  2HMM A;  1VM9 A;  5AEW A;  1ULJ A;  2BMO A;  3CXH E;  5BOK A;  1O7G A;  4NBC A;  2ZYL A;  1NTZ E;  4QDC A;  3GCF A;  2JO6 A;  2XRX A;  3VMG A;  1RIE A;  2HMO A;  2DE5 D;  3L73 E;  5CXM A;  4NBB A;  3GKE A;  2FYN C; 
#chains in the Genus database with same CATH topology
 1G8K B;  2B1X A;  4NBE A;  2D2C D;  4AIV A;  1VF5 D;  4HM0 A;  1ULI A;  3H1I E;  1JM1 A;  3C0D A;  4HKV A;  2GBW A;  4U3F E;  4HM3 A;  1Z03 A;  4QUQ A;  1NTM E;  4HM8 A;  1BCC E;  3N0Q A;  2YIU C;  2YFI A;  1SQV E;  1WQL A;  4PV1 D;  1KB9 E;  2HMN A;  2DE6 A;  3H1L E;  1EG9 A;  4QDF B;  1Z02 A;  1O7W A;  1FQT A;  4QCK A;  4EMJ B;  4NBA D;  1SQP E;  1O7N A;  2HML A;  3GZY A;  2I7F A;  4H0L D;  2XR8 A;  4NBD A;  4QUP A;  1NU1 E;  4NBF A;  2XSO A;  3EQQ A;  3VMI D;  3CX5 E;  3H1K E;  1ZRT E;  3VMH D;  2NWF A;  4NBH D;  2NVG A;  2YFL A;  4NB8 D;  2IBZ E;  2NUM A;  1UUV A;  1Q90 C;  2FYU E;  3H1J E;  1SJG A;  1SQB E;  3L71 E;  2DE5 A;  4NBG D;  1NYK A;  3L74 E;  2A06 E;  3AZC A;  3GL0 A;  3GL2 A;  4NB9 D;  2Q3W A;  2JZA A;  2GBX A;  3GB4 A;  1WW9 A;  4HJL A;  4QDD A;  1SQQ E;  2XSH A;  3EN1 A;  4HM4 A;  3GCE A;  3D89 A;  4HM2 A;  1P84 E;  4NBC D;  1G8J B;  1PPJ E;  2HMJ A;  3VCP A;  2BMQ A;  4AAY B;  4QDF A;  5KLI C;  3L72 E;  4P1B H;  3GOB A;  1L0N E;  2CKF A;  2BCC E;  4NBB D;  3GTS A;  1SQX E;  4P1C H;  3VCA A;  1RFS A;  3DQY A;  3GKQ A;  1O7H A;  2YVJ B;  4HM5 A;  2BMR A;  3L75 E;  4NBE D;  1O7M A;  2QJK C;  1KYO E;  3FOU A;  1NDO A;  4NBA A;  2ZT9 D;  3L70 E;  2E4P A;  2DE7 D;  5HL4 A;  4OGQ D;  5KKZ C;  1NTK E;  1VCK A;  4H44 D;  4PD4 E;  5AEU A;  2E74 D;  1Z01 A;  2E76 D;  2B24 A;  3BCC E;  4QUR A;  3H1H E;  4H13 D;  3VMI A;  3GZX A;  1UUW A;  1BE3 E;  2E75 D;  4NBH A;  1L0L E;  1PP9 E;  2DE6 D;  4NB8 A;  3VMH A;  4HM6 A;  2QPZ A;  1EZV E;  2E4Q A;  3GTE A;  2HMK A;  2QJY C;  3VMG D;  5KLV E;  3CWB E;  4NBD D;  2NUK A;  2YFJ A;  4HM1 A;  2NVE A;  4HM7 A;  3TGU E;  2DE7 A;  4NBG A;  4NB9 A;  4NBF D;  2NVF A;  2QJP C;  1O7P A;  2HMM A;  1VM9 A;  5AEW A;  1ULJ A;  2BMO A;  3CXH E;  5BOK A;  1O7G A;  4NBC A;  2ZYL A;  1NTZ E;  4QDC A;  3GCF A;  2JO6 A;  2XRX A;  3VMG A;  1RIE A;  2HMO A;  2DE5 D;  3L73 E;  5CXM A;  4NBB A;  3GKE A;  2FYN C; 
#chains in the Genus database with same CATH homology
 1G8K B;  2B1X A;  4NBE A;  2D2C D;  4AIV A;  1VF5 D;  4HM0 A;  1ULI A;  3H1I E;  1JM1 A;  3C0D A;  4HKV A;  2GBW A;  4U3F E;  4HM3 A;  1Z03 A;  4QUQ A;  1NTM E;  4HM8 A;  1BCC E;  3N0Q A;  2YIU C;  2YFI A;  1SQV E;  1WQL A;  4PV1 D;  1KB9 E;  2HMN A;  2DE6 A;  3H1L E;  1EG9 A;  4QDF B;  1Z02 A;  1O7W A;  1FQT A;  4QCK A;  4EMJ B;  4NBA D;  1SQP E;  1O7N A;  2HML A;  3GZY A;  2I7F A;  4H0L D;  2XR8 A;  4NBD A;  4QUP A;  1NU1 E;  4NBF A;  2XSO A;  3EQQ A;  3VMI D;  3CX5 E;  3H1K E;  1ZRT E;  3VMH D;  2NWF A;  4NBH D;  2NVG A;  2YFL A;  4NB8 D;  2IBZ E;  2NUM A;  1UUV A;  1Q90 C;  2FYU E;  3H1J E;  1SJG A;  1SQB E;  3L71 E;  2DE5 A;  4NBG D;  1NYK A;  3L74 E;  2A06 E;  3AZC A;  3GL0 A;  3GL2 A;  4NB9 D;  2Q3W A;  2JZA A;  2GBX A;  3GB4 A;  1WW9 A;  4HJL A;  4QDD A;  1SQQ E;  2XSH A;  3EN1 A;  4HM4 A;  3GCE A;  3D89 A;  4HM2 A;  1P84 E;  4NBC D;  1G8J B;  1PPJ E;  2HMJ A;  3VCP A;  2BMQ A;  4AAY B;  4QDF A;  5KLI C;  3L72 E;  4P1B H;  3GOB A;  1L0N E;  2CKF A;  2BCC E;  4NBB D;  3GTS A;  1SQX E;  4P1C H;  3VCA A;  1RFS A;  3DQY A;  3GKQ A;  1O7H A;  2YVJ B;  4HM5 A;  2BMR A;  3L75 E;  4NBE D;  1O7M A;  2QJK C;  1KYO E;  3FOU A;  1NDO A;  4NBA A;  2ZT9 D;  3L70 E;  2E4P A;  2DE7 D;  5HL4 A;  4OGQ D;  5KKZ C;  1NTK E;  1VCK A;  4H44 D;  4PD4 E;  5AEU A;  2E74 D;  1Z01 A;  2E76 D;  2B24 A;  3BCC E;  4QUR A;  3H1H E;  4H13 D;  3VMI A;  3GZX A;  1UUW A;  1BE3 E;  2E75 D;  4NBH A;  1L0L E;  1PP9 E;  2DE6 D;  4NB8 A;  3VMH A;  4HM6 A;  2QPZ A;  1EZV E;  2E4Q A;  3GTE A;  2HMK A;  2QJY C;  3VMG D;  5KLV E;  3CWB E;  4NBD D;  2NUK A;  2YFJ A;  4HM1 A;  2NVE A;  4HM7 A;  3TGU E;  2DE7 A;  4NBG A;  4NB9 A;  4NBF D;  2NVF A;  2QJP C;  1O7P A;  2HMM A;  1VM9 A;  5AEW A;  1ULJ A;  2BMO A;  3CXH E;  5BOK A;  1O7G A;  4NBC A;  2ZYL A;  1NTZ E;  4QDC A;  3GCF A;  2JO6 A;  2XRX A;  3VMG A;  1RIE A;  2HMO A;  2DE5 D;  3L73 E;  5CXM A;  4NBB A;  3GKE A;  2FYN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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