2BMOA

The crystal structure of nitrobenzene dioxygenase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
437
structure length
437
Chain Sequence
YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Comamonas sp.
publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
molecule keywords OXYGENASE-ALPHA NBDO
total genus 157
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmoA01
1NTME 3EQQA 1NTKE 5AEWA 4NBED 3D89A 2BMOA 2HMKA 2E4PA 1SQBE 2XRXA 2ZT9D 2QPZA 4QDCA 3VCPA 4HM6A 2B1XA 1P84E 2I7FA 4NBGD 2HMJA 1O7MA 3GZYA 1SQXE 4HM2A 1ZRTE 4QUQA 2NVGA 3H1IE 3CX5E 2FYNC 3N0QA 4QUPA 4NBCA 4NB8A 1SJGA 4H44D 1BE3E 3VCAA 1EZVE 2NUMA 4HM5A 1NDOA 4NBDA 2BMQA 4H0LD 2XR8A 2NWFA 5KKZC 2NUKA 1NTZE 3L73E 3L70E 5KLVE 4HM1A 1SQPE 4NBCD 3VMHA 1WQLA 4QURA 4NB8D 4QCKA 1O7HA 2QJYC 4NBHA 4NBDD 2E4QA 2DE6A 3GL0A 3GKEA 1RIEA 3L71E 5KLIC 4NBFA 2A06E 1VM9A 2XSOA 3VMGA 3GCEA 2HMNA 2HMOA 3DQYA 1SQVE 3VMHD 1SQQE 3C0DA 1JM1A 1UUVA 1KB9E 4EMJB 3H1LE 4NBAA 2E75D 2JO6A 2YFJA 4NBHD 3CXHE 2QJKC 2DE6D 2NVFA 3BCCE 1FQTA 3GTSA 3GZXA 3FOUA 2BCCE 1NU1E 1ULJA 2NVEA 3L72E 4NBFD 2E76D 1G8JB 2IBZE 3VMGD 4HM4A 4QDFB 5CXMA 2FYUE 5HL4A 3GTEA 4NBAD 2ZYLA 4HM0A 2D2CD 2Q3WA 2HMMA 3L75E 4NBBA 1O7WA 2E74D 3H1HE 1VCKA 3AZCA 5AEUA 3GB4A 2XSHA 2YFLA 3GOBA 4HM7A 1EG9A 2CKFA 1L0NE 3CWBE 1O7NA 4U3FE 4HM8A 4QDDA 4P1BH 2DE5A 2DE7A 4NBBD 3L74E 3VMIA 1L0LE 4P1CH 3GCFA 2BMRA 1G8KB 1Z03A 2GBWA 1NYKA 1Z01A 4NB9A 1UUWA 1PP9E 1RFSA 2QJPC 2DE5D 4AIVA 4HM3A 2DE7D 4HJLA 4NBEA 1O7GA 1O7PA 1Q90C 4H13D 2YFIA 2HMLA 2YIUC 3VMID 3TGUE 4QDFA 2GBXA 4PV1D 2YVJB 4PD4E 1BCCE 3H1JE 1Z02A 3EN1A 4NBGA 1KYOE 4AAYB 2B24A 1ULIA 1VF5D 3GL2A 2JZAA 3H1KE 4NB9D 1WW9A 4OGQD 3GKQA 1PPJE 4HKVA 5BOKA
chains in the Genus database with same CATH superfamily
1NTME 3EQQA 1NTKE 5AEWA 4NBED 3D89A 2BMOA 2HMKA 2E4PA 1SQBE 2XRXA 2ZT9D 2QPZA 4QDCA 3VCPA 4HM6A 2B1XA 1P84E 2I7FA 4NBGD 2HMJA 1O7MA 3GZYA 1SQXE 4HM2A 1ZRTE 4QUQA 2NVGA 3H1IE 3CX5E 2FYNC 3N0QA 4QUPA 4NBCA 4NB8A 1SJGA 4H44D 1BE3E 3VCAA 1EZVE 2NUMA 4HM5A 1NDOA 4NBDA 2BMQA 4H0LD 2XR8A 2NWFA 5KKZC 2NUKA 1NTZE 3L73E 3L70E 5KLVE 4HM1A 1SQPE 4NBCD 3VMHA 1WQLA 4QURA 4NB8D 4QCKA 1O7HA 2QJYC 4NBHA 4NBDD 2E4QA 2DE6A 3GL0A 3GKEA 1RIEA 3L71E 5KLIC 4NBFA 2A06E 1VM9A 2XSOA 3VMGA 3GCEA 2HMNA 2HMOA 3DQYA 1SQVE 3VMHD 1SQQE 3C0DA 1JM1A 1UUVA 1KB9E 4EMJB 3H1LE 4NBAA 2E75D 2JO6A 2YFJA 4NBHD 3CXHE 2QJKC 2DE6D 2NVFA 3BCCE 1FQTA 3GTSA 3GZXA 3FOUA 2BCCE 1NU1E 1ULJA 2NVEA 3L72E 4NBFD 2E76D 1G8JB 2IBZE 3VMGD 4HM4A 4QDFB 5CXMA 2FYUE 5HL4A 3GTEA 4NBAD 2ZYLA 4HM0A 2D2CD 2Q3WA 2HMMA 3L75E 4NBBA 1O7WA 2E74D 3H1HE 1VCKA 3AZCA 5AEUA 3GB4A 2XSHA 2YFLA 3GOBA 4HM7A 1EG9A 2CKFA 1L0NE 3CWBE 1O7NA 4U3FE 4HM8A 4QDDA 4P1BH 2DE5A 2DE7A 4NBBD 3L74E 3VMIA 1L0LE 4P1CH 3GCFA 2BMRA 1G8KB 1Z03A 2GBWA 1NYKA 1Z01A 4NB9A 1UUWA 1PP9E 1RFSA 2QJPC 2DE5D 4AIVA 4HM3A 2DE7D 4HJLA 4NBEA 1O7GA 1O7PA 1Q90C 4H13D 2YFIA 2HMLA 2YIUC 3VMID 3TGUE 4QDFA 2GBXA 4PV1D 2YVJB 4PD4E 1BCCE 3H1JE 1Z02A 3EN1A 4NBGA 1KYOE 4AAYB 2B24A 1ULIA 1VF5D 3GL2A 2JZAA 3H1KE 4NB9D 1WW9A 4OGQD 3GKQA 1PPJE 4HKVA 5BOKA
chains in the Genus database with same CATH topology
1NTME 3EQQA 1NTKE 5AEWA 4NBED 3D89A 2BMOA 2HMKA 2E4PA 1SQBE 2XRXA 2ZT9D 2QPZA 4QDCA 3VCPA 4HM6A 2B1XA 1P84E 2I7FA 4NBGD 2HMJA 1O7MA 3GZYA 1SQXE 4HM2A 1ZRTE 4QUQA 2NVGA 3H1IE 3CX5E 2FYNC 3N0QA 4QUPA 4NBCA 4NB8A 1SJGA 4H44D 1BE3E 3VCAA 1EZVE 2NUMA 4HM5A 1NDOA 4NBDA 2BMQA 4H0LD 2XR8A 2NWFA 5KKZC 2NUKA 1NTZE 3L73E 3L70E 5KLVE 4HM1A 1SQPE 4NBCD 3VMHA 1WQLA 4QURA 4NB8D 4QCKA 1O7HA 2QJYC 4NBHA 4NBDD 2E4QA 2DE6A 3GL0A 3GKEA 1RIEA 3L71E 5KLIC 4NBFA 2A06E 1VM9A 2XSOA 3VMGA 3GCEA 2HMNA 2HMOA 3DQYA 1SQVE 3VMHD 1SQQE 3C0DA 1JM1A 1UUVA 1KB9E 4EMJB 3H1LE 4NBAA 2E75D 2JO6A 2YFJA 4NBHD 3CXHE 2QJKC 2DE6D 2NVFA 3BCCE 1FQTA 3GTSA 3GZXA 3FOUA 2BCCE 1NU1E 1ULJA 2NVEA 3L72E 4NBFD 2E76D 1G8JB 2IBZE 3VMGD 4HM4A 4QDFB 5CXMA 2FYUE 5HL4A 3GTEA 4NBAD 2ZYLA 4HM0A 2D2CD 2Q3WA 2HMMA 3L75E 4NBBA 1O7WA 2E74D 3H1HE 1VCKA 3AZCA 5AEUA 3GB4A 2XSHA 2YFLA 3GOBA 4HM7A 1EG9A 2CKFA 1L0NE 3CWBE 1O7NA 4U3FE 4HM8A 4QDDA 4P1BH 2DE5A 2DE7A 4NBBD 3L74E 3VMIA 1L0LE 4P1CH 3GCFA 2BMRA 1G8KB 1Z03A 2GBWA 1NYKA 1Z01A 4NB9A 1UUWA 1PP9E 1RFSA 2QJPC 2DE5D 4AIVA 4HM3A 2DE7D 4HJLA 4NBEA 1O7GA 1O7PA 1Q90C 4H13D 2YFIA 2HMLA 2YIUC 3VMID 3TGUE 4QDFA 2GBXA 4PV1D 2YVJB 4PD4E 1BCCE 3H1JE 1Z02A 3EN1A 4NBGA 1KYOE 4AAYB 2B24A 1ULIA 1VF5D 3GL2A 2JZAA 3H1KE 4NB9D 1WW9A 4OGQD 3GKQA 1PPJE 4HKVA 5BOKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NTM E;  3EQQ A;  1NTK E;  5AEW A;  4NBE D;  3D89 A;  2BMO A;  2HMK A;  2E4P A;  1SQB E;  2XRX A;  2ZT9 D;  2QPZ A;  4QDC A;  3VCP A;  4HM6 A;  2B1X A;  1P84 E;  2I7F A;  4NBG D;  2HMJ A;  1O7M A;  3GZY A;  1SQX E;  4HM2 A;  1ZRT E;  4QUQ A;  2NVG A;  3H1I E;  3CX5 E;  2FYN C;  3N0Q A;  4QUP A;  4NBC A;  4NB8 A;  1SJG A;  4H44 D;  1BE3 E;  3VCA A;  1EZV E;  2NUM A;  4HM5 A;  1NDO A;  4NBD A;  2BMQ A;  4H0L D;  2XR8 A;  2NWF A;  5KKZ C;  2NUK A;  1NTZ E;  3L73 E;  3L70 E;  5KLV E;  4HM1 A;  1SQP E;  4NBC D;  3VMH A;  1WQL A;  4QUR A;  4NB8 D;  4QCK A;  1O7H A;  2QJY C;  4NBH A;  4NBD D;  2E4Q A;  2DE6 A;  3GL0 A;  3GKE A;  1RIE A;  3L71 E;  5KLI C;  4NBF A;  2A06 E;  1VM9 A;  2XSO A;  3VMG A;  3GCE A;  2HMN A;  2HMO A;  3DQY A;  1SQV E;  3VMH D;  1SQQ E;  3C0D A;  1JM1 A;  1UUV A;  1KB9 E;  4EMJ B;  3H1L E;  4NBA A;  2E75 D;  2JO6 A;  2YFJ A;  4NBH D;  3CXH E;  2QJK C;  2DE6 D;  2NVF A;  3BCC E;  1FQT A;  3GTS A;  3GZX A;  3FOU A;  2BCC E;  1NU1 E;  1ULJ A;  2NVE A;  3L72 E;  4NBF D;  2E76 D;  1G8J B;  2IBZ E;  3VMG D;  4HM4 A;  4QDF B;  5CXM A;  2FYU E;  5HL4 A;  3GTE A;  4NBA D;  2ZYL A;  4HM0 A;  2D2C D;  2Q3W A;  2HMM A;  3L75 E;  4NBB A;  1O7W A;  2E74 D;  3H1H E;  1VCK A;  3AZC A;  5AEU A;  3GB4 A;  2XSH A;  2YFL A;  3GOB A;  4HM7 A;  1EG9 A;  2CKF A;  1L0N E;  3CWB E;  1O7N A;  4U3F E;  4HM8 A;  4QDD A;  4P1B H;  2DE5 A;  2DE7 A;  4NBB D;  3L74 E;  3VMI A;  1L0L E;  4P1C H;  3GCF A;  2BMR A;  1G8K B;  1Z03 A;  2GBW A;  1NYK A;  1Z01 A;  4NB9 A;  1UUW A;  1PP9 E;  1RFS A;  2QJP C;  2DE5 D;  4AIV A;  4HM3 A;  2DE7 D;  4HJL A;  4NBE A;  1O7G A;  1O7P A;  1Q90 C;  4H13 D;  2YFI A;  2HML A;  2YIU C;  3VMI D;  3TGU E;  4QDF A;  2GBX A;  4PV1 D;  2YVJ B;  4PD4 E;  1BCC E;  3H1J E;  1Z02 A;  3EN1 A;  4NBG A;  1KYO E;  4AAY B;  2B24 A;  1ULI A;  1VF5 D;  3GL2 A;  2JZA A;  3H1K E;  4NB9 D;  1WW9 A;  4OGQ D;  3GKQ A;  1PPJ E;  4HKV A;  5BOK A; 
#chains in the Genus database with same CATH topology
 1NTM E;  3EQQ A;  1NTK E;  5AEW A;  4NBE D;  3D89 A;  2BMO A;  2HMK A;  2E4P A;  1SQB E;  2XRX A;  2ZT9 D;  2QPZ A;  4QDC A;  3VCP A;  4HM6 A;  2B1X A;  1P84 E;  2I7F A;  4NBG D;  2HMJ A;  1O7M A;  3GZY A;  1SQX E;  4HM2 A;  1ZRT E;  4QUQ A;  2NVG A;  3H1I E;  3CX5 E;  2FYN C;  3N0Q A;  4QUP A;  4NBC A;  4NB8 A;  1SJG A;  4H44 D;  1BE3 E;  3VCA A;  1EZV E;  2NUM A;  4HM5 A;  1NDO A;  4NBD A;  2BMQ A;  4H0L D;  2XR8 A;  2NWF A;  5KKZ C;  2NUK A;  1NTZ E;  3L73 E;  3L70 E;  5KLV E;  4HM1 A;  1SQP E;  4NBC D;  3VMH A;  1WQL A;  4QUR A;  4NB8 D;  4QCK A;  1O7H A;  2QJY C;  4NBH A;  4NBD D;  2E4Q A;  2DE6 A;  3GL0 A;  3GKE A;  1RIE A;  3L71 E;  5KLI C;  4NBF A;  2A06 E;  1VM9 A;  2XSO A;  3VMG A;  3GCE A;  2HMN A;  2HMO A;  3DQY A;  1SQV E;  3VMH D;  1SQQ E;  3C0D A;  1JM1 A;  1UUV A;  1KB9 E;  4EMJ B;  3H1L E;  4NBA A;  2E75 D;  2JO6 A;  2YFJ A;  4NBH D;  3CXH E;  2QJK C;  2DE6 D;  2NVF A;  3BCC E;  1FQT A;  3GTS A;  3GZX A;  3FOU A;  2BCC E;  1NU1 E;  1ULJ A;  2NVE A;  3L72 E;  4NBF D;  2E76 D;  1G8J B;  2IBZ E;  3VMG D;  4HM4 A;  4QDF B;  5CXM A;  2FYU E;  5HL4 A;  3GTE A;  4NBA D;  2ZYL A;  4HM0 A;  2D2C D;  2Q3W A;  2HMM A;  3L75 E;  4NBB A;  1O7W A;  2E74 D;  3H1H E;  1VCK A;  3AZC A;  5AEU A;  3GB4 A;  2XSH A;  2YFL A;  3GOB A;  4HM7 A;  1EG9 A;  2CKF A;  1L0N E;  3CWB E;  1O7N A;  4U3F E;  4HM8 A;  4QDD A;  4P1B H;  2DE5 A;  2DE7 A;  4NBB D;  3L74 E;  3VMI A;  1L0L E;  4P1C H;  3GCF A;  2BMR A;  1G8K B;  1Z03 A;  2GBW A;  1NYK A;  1Z01 A;  4NB9 A;  1UUW A;  1PP9 E;  1RFS A;  2QJP C;  2DE5 D;  4AIV A;  4HM3 A;  2DE7 D;  4HJL A;  4NBE A;  1O7G A;  1O7P A;  1Q90 C;  4H13 D;  2YFI A;  2HML A;  2YIU C;  3VMI D;  3TGU E;  4QDF A;  2GBX A;  4PV1 D;  2YVJ B;  4PD4 E;  1BCC E;  3H1J E;  1Z02 A;  3EN1 A;  4NBG A;  1KYO E;  4AAY B;  2B24 A;  1ULI A;  1VF5 D;  3GL2 A;  2JZA A;  3H1K E;  4NB9 D;  1WW9 A;  4OGQ D;  3GKQ A;  1PPJ E;  4HKV A;  5BOK A; 
#chains in the Genus database with same CATH homology
 1NTM E;  3EQQ A;  1NTK E;  5AEW A;  4NBE D;  3D89 A;  2BMO A;  2HMK A;  2E4P A;  1SQB E;  2XRX A;  2ZT9 D;  2QPZ A;  4QDC A;  3VCP A;  4HM6 A;  2B1X A;  1P84 E;  2I7F A;  4NBG D;  2HMJ A;  1O7M A;  3GZY A;  1SQX E;  4HM2 A;  1ZRT E;  4QUQ A;  2NVG A;  3H1I E;  3CX5 E;  2FYN C;  3N0Q A;  4QUP A;  4NBC A;  4NB8 A;  1SJG A;  4H44 D;  1BE3 E;  3VCA A;  1EZV E;  2NUM A;  4HM5 A;  1NDO A;  4NBD A;  2BMQ A;  4H0L D;  2XR8 A;  2NWF A;  5KKZ C;  2NUK A;  1NTZ E;  3L73 E;  3L70 E;  5KLV E;  4HM1 A;  1SQP E;  4NBC D;  3VMH A;  1WQL A;  4QUR A;  4NB8 D;  4QCK A;  1O7H A;  2QJY C;  4NBH A;  4NBD D;  2E4Q A;  2DE6 A;  3GL0 A;  3GKE A;  1RIE A;  3L71 E;  5KLI C;  4NBF A;  2A06 E;  1VM9 A;  2XSO A;  3VMG A;  3GCE A;  2HMN A;  2HMO A;  3DQY A;  1SQV E;  3VMH D;  1SQQ E;  3C0D A;  1JM1 A;  1UUV A;  1KB9 E;  4EMJ B;  3H1L E;  4NBA A;  2E75 D;  2JO6 A;  2YFJ A;  4NBH D;  3CXH E;  2QJK C;  2DE6 D;  2NVF A;  3BCC E;  1FQT A;  3GTS A;  3GZX A;  3FOU A;  2BCC E;  1NU1 E;  1ULJ A;  2NVE A;  3L72 E;  4NBF D;  2E76 D;  1G8J B;  2IBZ E;  3VMG D;  4HM4 A;  4QDF B;  5CXM A;  2FYU E;  5HL4 A;  3GTE A;  4NBA D;  2ZYL A;  4HM0 A;  2D2C D;  2Q3W A;  2HMM A;  3L75 E;  4NBB A;  1O7W A;  2E74 D;  3H1H E;  1VCK A;  3AZC A;  5AEU A;  3GB4 A;  2XSH A;  2YFL A;  3GOB A;  4HM7 A;  1EG9 A;  2CKF A;  1L0N E;  3CWB E;  1O7N A;  4U3F E;  4HM8 A;  4QDD A;  4P1B H;  2DE5 A;  2DE7 A;  4NBB D;  3L74 E;  3VMI A;  1L0L E;  4P1C H;  3GCF A;  2BMR A;  1G8K B;  1Z03 A;  2GBW A;  1NYK A;  1Z01 A;  4NB9 A;  1UUW A;  1PP9 E;  1RFS A;  2QJP C;  2DE5 D;  4AIV A;  4HM3 A;  2DE7 D;  4HJL A;  4NBE A;  1O7G A;  1O7P A;  1Q90 C;  4H13 D;  2YFI A;  2HML A;  2YIU C;  3VMI D;  3TGU E;  4QDF A;  2GBX A;  4PV1 D;  2YVJ B;  4PD4 E;  1BCC E;  3H1J E;  1Z02 A;  3EN1 A;  4NBG A;  1KYO E;  4AAY B;  2B24 A;  1ULI A;  1VF5 D;  3GL2 A;  2JZA A;  3H1K E;  4NB9 D;  1WW9 A;  4OGQ D;  3GKQ A;  1PPJ E;  4HKV A;  5BOK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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