2BMOA

The crystal structure of nitrobenzene dioxygenase
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
437
structure length
437
Chain Sequence
YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords OXYGENASE-ALPHA NBDO
publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
source organism Comamonas sp.
molecule tags Oxidoreductase
total genus 157
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmoA01
2BCCE 1ULIA 3EQQA 1SQQE 1VF5D 3H1HE 4NBFD 2B24A 4AAYB 4NBHD 1Z03A 3L70E 3L73E 2NVGA 3GL2A 3GTSA 3C0DA 1FQTA 1RIEA 1O7MA 2XR8A 4NBDA 1NTKE 4PV1D 1VCKA 3H1IE 2NUMA 1UUWA 2DE7D 3DQYA 4HM7A 4QDDA 2E74D 1O7HA 4NBBA 2GBWA 4NB9D 4NBCA 2DE6D 2HMOA 4NBAD 2DE5D 2FYNC 2QJKC 2YFJA 3H1JE 4HM3A 1SJGA 2CKFA 3GKQA 1ULJA 1EZVE 1JM1A 2E75D 1SQXE 2A06E 2I7FA 4QUQA 2BMOA 2JZAA 3N0QA 4NB8D 1UUVA 5AEWA 4NBEA 4PD4E 2QPZA 1PP9E 4NBFA 4HM6A 1O7PA 4HJLA 4NBHA 1O7GA 1VM9A 3CXHE 2E4QA 4HM4A 3VMGD 4QCKA 1Q90C 1L0LE 4HKVA 4HM0A 4OGQD 4P1BH 1EG9A 5KLIC 2YFLA 1NTZE 2ZYLA 2DE7A 1P84E 4HM8A 3GOBA 3D89A 4H13D 3CX5E 4NB9A 1BE3E 2YVJB 4P1CH 2DE6A 4QURA 2JO6A 4NBAA 2DE5A 2D2CD 3TGUE 2HMMA 3L75E 1BCCE 4HM5A 2NWFA 2XRXA 2HMLA 1NYKA 3EN1A 4HM1A 1RFSA 1SQBE 2E4PA 4NB8A 1G8JB 1KB9E 3VMID 3VMIA 2GBXA 5BOKA 2QJPC 2BMRA 4H0LD 4NBGD 4NBGA 3L74E 3VMGA 1SQVE 3BCCE 5KKZC 2YIUC 5CXMA 2XSHA 3GZYA 3AZCA 2NVFA 5HL4A 5KLVE 1O7WA 3GCEA 1L0NE 4HM2A 4NBED 1Z01A 2B1XA 2HMNA 2XSOA 3VMHD 1NU1E 1SQPE 3L72E 3H1LE 3L71E 2QJYC 2ZT9D 3GTEA 4EMJB 2HMKA 1O7NA 1NDOA 1Z02A 4QDCA 2BMQA 4QDFA 3VCAA 3H1KE 1NTME 2HMJA 4NBDD 1WQLA 3GL0A 4QUPA 4NBBD 3CWBE 3FOUA 4NBCD 4QDFB 2YFIA 3GCFA 1WW9A 4U3FE 3VCPA 3GB4A 3GZXA 2IBZE 3GKEA 2NUKA 5AEUA 4AIVA 2Q3WA 1ZRTE 2E76D 1KYOE 1PPJE 3VMHA 2NVEA 2FYUE 4H44D 1G8KB
chains in the Genus database with same CATH superfamily
2BCCE 1ULIA 3EQQA 1SQQE 1VF5D 3H1HE 4NBFD 2B24A 4AAYB 4NBHD 1Z03A 3L70E 3L73E 2NVGA 3GL2A 3GTSA 3C0DA 1FQTA 1RIEA 1O7MA 2XR8A 4NBDA 1NTKE 4PV1D 1VCKA 3H1IE 2NUMA 1UUWA 2DE7D 3DQYA 4HM7A 4QDDA 2E74D 1O7HA 4NBBA 2GBWA 4NB9D 4NBCA 2DE6D 2HMOA 4NBAD 2DE5D 2FYNC 2QJKC 2YFJA 3H1JE 4HM3A 1SJGA 2CKFA 3GKQA 1ULJA 1EZVE 1JM1A 2E75D 1SQXE 2A06E 2I7FA 4QUQA 2BMOA 2JZAA 3N0QA 4NB8D 1UUVA 5AEWA 4NBEA 4PD4E 2QPZA 1PP9E 4NBFA 4HM6A 1O7PA 4HJLA 4NBHA 1O7GA 1VM9A 3CXHE 2E4QA 4HM4A 3VMGD 4QCKA 1Q90C 1L0LE 4HKVA 4HM0A 4OGQD 4P1BH 1EG9A 5KLIC 2YFLA 1NTZE 2ZYLA 2DE7A 1P84E 4HM8A 3GOBA 3D89A 4H13D 3CX5E 4NB9A 1BE3E 2YVJB 4P1CH 2DE6A 4QURA 2JO6A 4NBAA 2DE5A 2D2CD 3TGUE 2HMMA 3L75E 1BCCE 4HM5A 2NWFA 2XRXA 2HMLA 1NYKA 3EN1A 4HM1A 1RFSA 1SQBE 2E4PA 4NB8A 1G8JB 1KB9E 3VMID 3VMIA 2GBXA 5BOKA 2QJPC 2BMRA 4H0LD 4NBGD 4NBGA 3L74E 3VMGA 1SQVE 3BCCE 5KKZC 2YIUC 5CXMA 2XSHA 3GZYA 3AZCA 2NVFA 5HL4A 5KLVE 1O7WA 3GCEA 1L0NE 4HM2A 4NBED 1Z01A 2B1XA 2HMNA 2XSOA 3VMHD 1NU1E 1SQPE 3L72E 3H1LE 3L71E 2QJYC 2ZT9D 3GTEA 4EMJB 2HMKA 1O7NA 1NDOA 1Z02A 4QDCA 2BMQA 4QDFA 3VCAA 3H1KE 1NTME 2HMJA 4NBDD 1WQLA 3GL0A 4QUPA 4NBBD 3CWBE 3FOUA 4NBCD 4QDFB 2YFIA 3GCFA 1WW9A 4U3FE 3VCPA 3GB4A 3GZXA 2IBZE 3GKEA 2NUKA 5AEUA 4AIVA 2Q3WA 1ZRTE 2E76D 1KYOE 1PPJE 3VMHA 2NVEA 2FYUE 4H44D 1G8KB
chains in the Genus database with same CATH topology
2BCCE 1ULIA 3EQQA 1SQQE 1VF5D 3H1HE 4NBFD 2B24A 4AAYB 4NBHD 1Z03A 3L70E 3L73E 2NVGA 3GL2A 3GTSA 3C0DA 1FQTA 1RIEA 1O7MA 2XR8A 4NBDA 1NTKE 4PV1D 1VCKA 3H1IE 2NUMA 1UUWA 2DE7D 3DQYA 4HM7A 4QDDA 2E74D 1O7HA 4NBBA 2GBWA 4NB9D 4NBCA 2DE6D 2HMOA 4NBAD 2DE5D 2FYNC 2QJKC 2YFJA 3H1JE 4HM3A 1SJGA 2CKFA 3GKQA 1ULJA 1EZVE 1JM1A 2E75D 1SQXE 2A06E 2I7FA 4QUQA 2BMOA 2JZAA 3N0QA 4NB8D 1UUVA 5AEWA 4NBEA 4PD4E 2QPZA 1PP9E 4NBFA 4HM6A 1O7PA 4HJLA 4NBHA 1O7GA 1VM9A 3CXHE 2E4QA 4HM4A 3VMGD 4QCKA 1Q90C 1L0LE 4HKVA 4HM0A 4OGQD 4P1BH 1EG9A 5KLIC 2YFLA 1NTZE 2ZYLA 2DE7A 1P84E 4HM8A 3GOBA 3D89A 4H13D 3CX5E 4NB9A 1BE3E 2YVJB 4P1CH 2DE6A 4QURA 2JO6A 4NBAA 2DE5A 2D2CD 3TGUE 2HMMA 3L75E 1BCCE 4HM5A 2NWFA 2XRXA 2HMLA 1NYKA 3EN1A 4HM1A 1RFSA 1SQBE 2E4PA 4NB8A 1G8JB 1KB9E 3VMID 3VMIA 2GBXA 5BOKA 2QJPC 2BMRA 4H0LD 4NBGD 4NBGA 3L74E 3VMGA 1SQVE 3BCCE 5KKZC 2YIUC 5CXMA 2XSHA 3GZYA 3AZCA 2NVFA 5HL4A 5KLVE 1O7WA 3GCEA 1L0NE 4HM2A 4NBED 1Z01A 2B1XA 2HMNA 2XSOA 3VMHD 1NU1E 1SQPE 3L72E 3H1LE 3L71E 2QJYC 2ZT9D 3GTEA 4EMJB 2HMKA 1O7NA 1NDOA 1Z02A 4QDCA 2BMQA 4QDFA 3VCAA 3H1KE 1NTME 2HMJA 4NBDD 1WQLA 3GL0A 4QUPA 4NBBD 3CWBE 3FOUA 4NBCD 4QDFB 2YFIA 3GCFA 1WW9A 4U3FE 3VCPA 3GB4A 3GZXA 2IBZE 3GKEA 2NUKA 5AEUA 4AIVA 2Q3WA 1ZRTE 2E76D 1KYOE 1PPJE 3VMHA 2NVEA 2FYUE 4H44D 1G8KB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BCC E;  1ULI A;  3EQQ A;  1SQQ E;  1VF5 D;  3H1H E;  4NBF D;  2B24 A;  4AAY B;  4NBH D;  1Z03 A;  3L70 E;  3L73 E;  2NVG A;  3GL2 A;  3GTS A;  3C0D A;  1FQT A;  1RIE A;  1O7M A;  2XR8 A;  4NBD A;  1NTK E;  4PV1 D;  1VCK A;  3H1I E;  2NUM A;  1UUW A;  2DE7 D;  3DQY A;  4HM7 A;  4QDD A;  2E74 D;  1O7H A;  4NBB A;  2GBW A;  4NB9 D;  4NBC A;  2DE6 D;  2HMO A;  4NBA D;  2DE5 D;  2FYN C;  2QJK C;  2YFJ A;  3H1J E;  4HM3 A;  1SJG A;  2CKF A;  3GKQ A;  1ULJ A;  1EZV E;  1JM1 A;  2E75 D;  1SQX E;  2A06 E;  2I7F A;  4QUQ A;  2BMO A;  2JZA A;  3N0Q A;  4NB8 D;  1UUV A;  5AEW A;  4NBE A;  4PD4 E;  2QPZ A;  1PP9 E;  4NBF A;  4HM6 A;  1O7P A;  4HJL A;  4NBH A;  1O7G A;  1VM9 A;  3CXH E;  2E4Q A;  4HM4 A;  3VMG D;  4QCK A;  1Q90 C;  1L0L E;  4HKV A;  4HM0 A;  4OGQ D;  4P1B H;  1EG9 A;  5KLI C;  2YFL A;  1NTZ E;  2ZYL A;  2DE7 A;  1P84 E;  4HM8 A;  3GOB A;  3D89 A;  4H13 D;  3CX5 E;  4NB9 A;  1BE3 E;  2YVJ B;  4P1C H;  2DE6 A;  4QUR A;  2JO6 A;  4NBA A;  2DE5 A;  2D2C D;  3TGU E;  2HMM A;  3L75 E;  1BCC E;  4HM5 A;  2NWF A;  2XRX A;  2HML A;  1NYK A;  3EN1 A;  4HM1 A;  1RFS A;  1SQB E;  2E4P A;  4NB8 A;  1G8J B;  1KB9 E;  3VMI D;  3VMI A;  2GBX A;  5BOK A;  2QJP C;  2BMR A;  4H0L D;  4NBG D;  4NBG A;  3L74 E;  3VMG A;  1SQV E;  3BCC E;  5KKZ C;  2YIU C;  5CXM A;  2XSH A;  3GZY A;  3AZC A;  2NVF A;  5HL4 A;  5KLV E;  1O7W A;  3GCE A;  1L0N E;  4HM2 A;  4NBE D;  1Z01 A;  2B1X A;  2HMN A;  2XSO A;  3VMH D;  1NU1 E;  1SQP E;  3L72 E;  3H1L E;  3L71 E;  2QJY C;  2ZT9 D;  3GTE A;  4EMJ B;  2HMK A;  1O7N A;  1NDO A;  1Z02 A;  4QDC A;  2BMQ A;  4QDF A;  3VCA A;  3H1K E;  1NTM E;  2HMJ A;  4NBD D;  1WQL A;  3GL0 A;  4QUP A;  4NBB D;  3CWB E;  3FOU A;  4NBC D;  4QDF B;  2YFI A;  3GCF A;  1WW9 A;  4U3F E;  3VCP A;  3GB4 A;  3GZX A;  2IBZ E;  3GKE A;  2NUK A;  5AEU A;  4AIV A;  2Q3W A;  1ZRT E;  2E76 D;  1KYO E;  1PPJ E;  3VMH A;  2NVE A;  2FYU E;  4H44 D;  1G8K B; 
#chains in the Genus database with same CATH topology
 2BCC E;  1ULI A;  3EQQ A;  1SQQ E;  1VF5 D;  3H1H E;  4NBF D;  2B24 A;  4AAY B;  4NBH D;  1Z03 A;  3L70 E;  3L73 E;  2NVG A;  3GL2 A;  3GTS A;  3C0D A;  1FQT A;  1RIE A;  1O7M A;  2XR8 A;  4NBD A;  1NTK E;  4PV1 D;  1VCK A;  3H1I E;  2NUM A;  1UUW A;  2DE7 D;  3DQY A;  4HM7 A;  4QDD A;  2E74 D;  1O7H A;  4NBB A;  2GBW A;  4NB9 D;  4NBC A;  2DE6 D;  2HMO A;  4NBA D;  2DE5 D;  2FYN C;  2QJK C;  2YFJ A;  3H1J E;  4HM3 A;  1SJG A;  2CKF A;  3GKQ A;  1ULJ A;  1EZV E;  1JM1 A;  2E75 D;  1SQX E;  2A06 E;  2I7F A;  4QUQ A;  2BMO A;  2JZA A;  3N0Q A;  4NB8 D;  1UUV A;  5AEW A;  4NBE A;  4PD4 E;  2QPZ A;  1PP9 E;  4NBF A;  4HM6 A;  1O7P A;  4HJL A;  4NBH A;  1O7G A;  1VM9 A;  3CXH E;  2E4Q A;  4HM4 A;  3VMG D;  4QCK A;  1Q90 C;  1L0L E;  4HKV A;  4HM0 A;  4OGQ D;  4P1B H;  1EG9 A;  5KLI C;  2YFL A;  1NTZ E;  2ZYL A;  2DE7 A;  1P84 E;  4HM8 A;  3GOB A;  3D89 A;  4H13 D;  3CX5 E;  4NB9 A;  1BE3 E;  2YVJ B;  4P1C H;  2DE6 A;  4QUR A;  2JO6 A;  4NBA A;  2DE5 A;  2D2C D;  3TGU E;  2HMM A;  3L75 E;  1BCC E;  4HM5 A;  2NWF A;  2XRX A;  2HML A;  1NYK A;  3EN1 A;  4HM1 A;  1RFS A;  1SQB E;  2E4P A;  4NB8 A;  1G8J B;  1KB9 E;  3VMI D;  3VMI A;  2GBX A;  5BOK A;  2QJP C;  2BMR A;  4H0L D;  4NBG D;  4NBG A;  3L74 E;  3VMG A;  1SQV E;  3BCC E;  5KKZ C;  2YIU C;  5CXM A;  2XSH A;  3GZY A;  3AZC A;  2NVF A;  5HL4 A;  5KLV E;  1O7W A;  3GCE A;  1L0N E;  4HM2 A;  4NBE D;  1Z01 A;  2B1X A;  2HMN A;  2XSO A;  3VMH D;  1NU1 E;  1SQP E;  3L72 E;  3H1L E;  3L71 E;  2QJY C;  2ZT9 D;  3GTE A;  4EMJ B;  2HMK A;  1O7N A;  1NDO A;  1Z02 A;  4QDC A;  2BMQ A;  4QDF A;  3VCA A;  3H1K E;  1NTM E;  2HMJ A;  4NBD D;  1WQL A;  3GL0 A;  4QUP A;  4NBB D;  3CWB E;  3FOU A;  4NBC D;  4QDF B;  2YFI A;  3GCF A;  1WW9 A;  4U3F E;  3VCP A;  3GB4 A;  3GZX A;  2IBZ E;  3GKE A;  2NUK A;  5AEU A;  4AIV A;  2Q3W A;  1ZRT E;  2E76 D;  1KYO E;  1PPJ E;  3VMH A;  2NVE A;  2FYU E;  4H44 D;  1G8K B; 
#chains in the Genus database with same CATH homology
 2BCC E;  1ULI A;  3EQQ A;  1SQQ E;  1VF5 D;  3H1H E;  4NBF D;  2B24 A;  4AAY B;  4NBH D;  1Z03 A;  3L70 E;  3L73 E;  2NVG A;  3GL2 A;  3GTS A;  3C0D A;  1FQT A;  1RIE A;  1O7M A;  2XR8 A;  4NBD A;  1NTK E;  4PV1 D;  1VCK A;  3H1I E;  2NUM A;  1UUW A;  2DE7 D;  3DQY A;  4HM7 A;  4QDD A;  2E74 D;  1O7H A;  4NBB A;  2GBW A;  4NB9 D;  4NBC A;  2DE6 D;  2HMO A;  4NBA D;  2DE5 D;  2FYN C;  2QJK C;  2YFJ A;  3H1J E;  4HM3 A;  1SJG A;  2CKF A;  3GKQ A;  1ULJ A;  1EZV E;  1JM1 A;  2E75 D;  1SQX E;  2A06 E;  2I7F A;  4QUQ A;  2BMO A;  2JZA A;  3N0Q A;  4NB8 D;  1UUV A;  5AEW A;  4NBE A;  4PD4 E;  2QPZ A;  1PP9 E;  4NBF A;  4HM6 A;  1O7P A;  4HJL A;  4NBH A;  1O7G A;  1VM9 A;  3CXH E;  2E4Q A;  4HM4 A;  3VMG D;  4QCK A;  1Q90 C;  1L0L E;  4HKV A;  4HM0 A;  4OGQ D;  4P1B H;  1EG9 A;  5KLI C;  2YFL A;  1NTZ E;  2ZYL A;  2DE7 A;  1P84 E;  4HM8 A;  3GOB A;  3D89 A;  4H13 D;  3CX5 E;  4NB9 A;  1BE3 E;  2YVJ B;  4P1C H;  2DE6 A;  4QUR A;  2JO6 A;  4NBA A;  2DE5 A;  2D2C D;  3TGU E;  2HMM A;  3L75 E;  1BCC E;  4HM5 A;  2NWF A;  2XRX A;  2HML A;  1NYK A;  3EN1 A;  4HM1 A;  1RFS A;  1SQB E;  2E4P A;  4NB8 A;  1G8J B;  1KB9 E;  3VMI D;  3VMI A;  2GBX A;  5BOK A;  2QJP C;  2BMR A;  4H0L D;  4NBG D;  4NBG A;  3L74 E;  3VMG A;  1SQV E;  3BCC E;  5KKZ C;  2YIU C;  5CXM A;  2XSH A;  3GZY A;  3AZC A;  2NVF A;  5HL4 A;  5KLV E;  1O7W A;  3GCE A;  1L0N E;  4HM2 A;  4NBE D;  1Z01 A;  2B1X A;  2HMN A;  2XSO A;  3VMH D;  1NU1 E;  1SQP E;  3L72 E;  3H1L E;  3L71 E;  2QJY C;  2ZT9 D;  3GTE A;  4EMJ B;  2HMK A;  1O7N A;  1NDO A;  1Z02 A;  4QDC A;  2BMQ A;  4QDF A;  3VCA A;  3H1K E;  1NTM E;  2HMJ A;  4NBD D;  1WQL A;  3GL0 A;  4QUP A;  4NBB D;  3CWB E;  3FOU A;  4NBC D;  4QDF B;  2YFI A;  3GCF A;  1WW9 A;  4U3F E;  3VCP A;  3GB4 A;  3GZX A;  2IBZ E;  3GKE A;  2NUK A;  5AEU A;  4AIV A;  2Q3W A;  1ZRT E;  2E76 D;  1KYO E;  1PPJ E;  3VMH A;  2NVE A;  2FYU E;  4H44 D;  1G8K B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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