2BMRA

The crystal structure of nitrobenzene dioxygenase in complex with 3- nitrotoluene
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
437
structure length
437
Chain Sequence
YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
source organism Comamonas sp.
molecule tags Oxidoreductase
molecule keywords OXYGENASE-ALPHA NBDO
total genus 158
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmrA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmrA01
1UUWA 2XRXA 2DE5D 2XR8A 2FYUE 4H44D 4NBCD 3CXHE 4QDCA 2NVEA 4EMJB 1O7WA 1NTME 4HM3A 2E4PA 4P1BH 3GZXA 2BMQA 2B1XA 4HM2A 5BOKA 1O7GA 4NBED 1ULIA 4H13D 1WW9A 2NVFA 4NBGD 3L71E 3D89A 1G8KB 5KLVE 3VCAA 2GBXA 3GL0A 3GB4A 2HMNA 3EQQA 5KLIC 3TGUE 4H0LD 1NTKE 2ZT9D 1O7PA 4NBDA 1FQTA 1WQLA 2DE5A 1JM1A 2D2CD 4NBDD 3GCFA 2BMRA 3CX5E 1Z02A 4HM4A 4HM8A 4QDDA 3C0DA 4AAYB 2QJPC 4QURA 4NBHD 2BCCE 4NBHA 2E4QA 3CWBE 2DE7A 3GZYA 3VMID 1BE3E 3H1JE 5AEWA 1P84E 2NVGA 1ULJA 4HJLA 3L74E 2YFIA 4NB8A 1G8JB 4QUPA 1SJGA 1SQQE 3GL2A 3L72E 1NYKA 1UUVA 1O7MA 1PPJE 4QCKA 2YFLA 3H1KE 1VCKA 3GTSA 4PV1D 2QJKC 5KKZC 2DE6D 4NB9A 3GCEA 4NBBD 1Q90C 1NTZE 2YIUC 5CXMA 2NWFA 4NBBA 1EG9A 2B24A 3H1LE 1EZVE 3BCCE 5HL4A 2HMJA 2DE7D 2QJYC 4QDFB 4HM6A 4NB9D 4QDFA 1Z01A 1O7HA 1PP9E 1SQBE 1KYOE 4NBAA 3GKEA 3VMHD 4OGQD 4PD4E 4QUQA 1SQXE 2E76D 2Q3WA 1Z03A 4NBCA 3L73E 2GBWA 4U3FE 2NUMA 2HMOA 1SQPE 2E74D 2DE6A 1L0LE 2CKFA 4NBFD 4HM0A 2HMLA 2A06E 3DQYA 3H1HE 4NB8D 2IBZE 4NBAD 4AIVA 2BMOA 1VF5D 3GKQA 4NBEA 2FYNC 3GOBA 3VMIA 2YFJA 2XSHA 1L0NE 3L75E 4HM5A 2NUKA 1VM9A 3GTEA 3VMGD 3AZCA 2E75D 5AEUA 1SQVE 2I7FA 3VMGA 2HMKA 3VMHA 1O7NA 2YVJB 4NBFA 4HM7A 3EN1A 4HKVA 3FOUA 2XSOA 1NU1E 4NBGA 1RFSA 3L70E 2JZAA 1RIEA 4HM1A 2QPZA 2ZYLA 3H1IE 4P1CH 1BCCE 2HMMA 1NDOA 1KB9E 1ZRTE 3VCPA 3N0QA 2JO6A
chains in the Genus database with same CATH superfamily
1UUWA 2XRXA 2DE5D 2XR8A 2FYUE 4H44D 4NBCD 3CXHE 4QDCA 2NVEA 4EMJB 1O7WA 1NTME 4HM3A 2E4PA 4P1BH 3GZXA 2BMQA 2B1XA 4HM2A 5BOKA 1O7GA 4NBED 1ULIA 4H13D 1WW9A 2NVFA 4NBGD 3L71E 3D89A 1G8KB 5KLVE 3VCAA 2GBXA 3GL0A 3GB4A 2HMNA 3EQQA 5KLIC 3TGUE 4H0LD 1NTKE 2ZT9D 1O7PA 4NBDA 1FQTA 1WQLA 2DE5A 1JM1A 2D2CD 4NBDD 3GCFA 2BMRA 3CX5E 1Z02A 4HM4A 4HM8A 4QDDA 3C0DA 4AAYB 2QJPC 4QURA 4NBHD 2BCCE 4NBHA 2E4QA 3CWBE 2DE7A 3GZYA 3VMID 1BE3E 3H1JE 5AEWA 1P84E 2NVGA 1ULJA 4HJLA 3L74E 2YFIA 4NB8A 1G8JB 4QUPA 1SJGA 1SQQE 3GL2A 3L72E 1NYKA 1UUVA 1O7MA 1PPJE 4QCKA 2YFLA 3H1KE 1VCKA 3GTSA 4PV1D 2QJKC 5KKZC 2DE6D 4NB9A 3GCEA 4NBBD 1Q90C 1NTZE 2YIUC 5CXMA 2NWFA 4NBBA 1EG9A 2B24A 3H1LE 1EZVE 3BCCE 5HL4A 2HMJA 2DE7D 2QJYC 4QDFB 4HM6A 4NB9D 4QDFA 1Z01A 1O7HA 1PP9E 1SQBE 1KYOE 4NBAA 3GKEA 3VMHD 4OGQD 4PD4E 4QUQA 1SQXE 2E76D 2Q3WA 1Z03A 4NBCA 3L73E 2GBWA 4U3FE 2NUMA 2HMOA 1SQPE 2E74D 2DE6A 1L0LE 2CKFA 4NBFD 4HM0A 2HMLA 2A06E 3DQYA 3H1HE 4NB8D 2IBZE 4NBAD 4AIVA 2BMOA 1VF5D 3GKQA 4NBEA 2FYNC 3GOBA 3VMIA 2YFJA 2XSHA 1L0NE 3L75E 4HM5A 2NUKA 1VM9A 3GTEA 3VMGD 3AZCA 2E75D 5AEUA 1SQVE 2I7FA 3VMGA 2HMKA 3VMHA 1O7NA 2YVJB 4NBFA 4HM7A 3EN1A 4HKVA 3FOUA 2XSOA 1NU1E 4NBGA 1RFSA 3L70E 2JZAA 1RIEA 4HM1A 2QPZA 2ZYLA 3H1IE 4P1CH 1BCCE 2HMMA 1NDOA 1KB9E 1ZRTE 3VCPA 3N0QA 2JO6A
chains in the Genus database with same CATH topology
1UUWA 2XRXA 2DE5D 2XR8A 2FYUE 4H44D 4NBCD 3CXHE 4QDCA 2NVEA 4EMJB 1O7WA 1NTME 4HM3A 2E4PA 4P1BH 3GZXA 2BMQA 2B1XA 4HM2A 5BOKA 1O7GA 4NBED 1ULIA 4H13D 1WW9A 2NVFA 4NBGD 3L71E 3D89A 1G8KB 5KLVE 3VCAA 2GBXA 3GL0A 3GB4A 2HMNA 3EQQA 5KLIC 3TGUE 4H0LD 1NTKE 2ZT9D 1O7PA 4NBDA 1FQTA 1WQLA 2DE5A 1JM1A 2D2CD 4NBDD 3GCFA 2BMRA 3CX5E 1Z02A 4HM4A 4HM8A 4QDDA 3C0DA 4AAYB 2QJPC 4QURA 4NBHD 2BCCE 4NBHA 2E4QA 3CWBE 2DE7A 3GZYA 3VMID 1BE3E 3H1JE 5AEWA 1P84E 2NVGA 1ULJA 4HJLA 3L74E 2YFIA 4NB8A 1G8JB 4QUPA 1SJGA 1SQQE 3GL2A 3L72E 1NYKA 1UUVA 1O7MA 1PPJE 4QCKA 2YFLA 3H1KE 1VCKA 3GTSA 4PV1D 2QJKC 5KKZC 2DE6D 4NB9A 3GCEA 4NBBD 1Q90C 1NTZE 2YIUC 5CXMA 2NWFA 4NBBA 1EG9A 2B24A 3H1LE 1EZVE 3BCCE 5HL4A 2HMJA 2DE7D 2QJYC 4QDFB 4HM6A 4NB9D 4QDFA 1Z01A 1O7HA 1PP9E 1SQBE 1KYOE 4NBAA 3GKEA 3VMHD 4OGQD 4PD4E 4QUQA 1SQXE 2E76D 2Q3WA 1Z03A 4NBCA 3L73E 2GBWA 4U3FE 2NUMA 2HMOA 1SQPE 2E74D 2DE6A 1L0LE 2CKFA 4NBFD 4HM0A 2HMLA 2A06E 3DQYA 3H1HE 4NB8D 2IBZE 4NBAD 4AIVA 2BMOA 1VF5D 3GKQA 4NBEA 2FYNC 3GOBA 3VMIA 2YFJA 2XSHA 1L0NE 3L75E 4HM5A 2NUKA 1VM9A 3GTEA 3VMGD 3AZCA 2E75D 5AEUA 1SQVE 2I7FA 3VMGA 2HMKA 3VMHA 1O7NA 2YVJB 4NBFA 4HM7A 3EN1A 4HKVA 3FOUA 2XSOA 1NU1E 4NBGA 1RFSA 3L70E 2JZAA 1RIEA 4HM1A 2QPZA 2ZYLA 3H1IE 4P1CH 1BCCE 2HMMA 1NDOA 1KB9E 1ZRTE 3VCPA 3N0QA 2JO6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UUW A;  2XRX A;  2DE5 D;  2XR8 A;  2FYU E;  4H44 D;  4NBC D;  3CXH E;  4QDC A;  2NVE A;  4EMJ B;  1O7W A;  1NTM E;  4HM3 A;  2E4P A;  4P1B H;  3GZX A;  2BMQ A;  2B1X A;  4HM2 A;  5BOK A;  1O7G A;  4NBE D;  1ULI A;  4H13 D;  1WW9 A;  2NVF A;  4NBG D;  3L71 E;  3D89 A;  1G8K B;  5KLV E;  3VCA A;  2GBX A;  3GL0 A;  3GB4 A;  2HMN A;  3EQQ A;  5KLI C;  3TGU E;  4H0L D;  1NTK E;  2ZT9 D;  1O7P A;  4NBD A;  1FQT A;  1WQL A;  2DE5 A;  1JM1 A;  2D2C D;  4NBD D;  3GCF A;  2BMR A;  3CX5 E;  1Z02 A;  4HM4 A;  4HM8 A;  4QDD A;  3C0D A;  4AAY B;  2QJP C;  4QUR A;  4NBH D;  2BCC E;  4NBH A;  2E4Q A;  3CWB E;  2DE7 A;  3GZY A;  3VMI D;  1BE3 E;  3H1J E;  5AEW A;  1P84 E;  2NVG A;  1ULJ A;  4HJL A;  3L74 E;  2YFI A;  4NB8 A;  1G8J B;  4QUP A;  1SJG A;  1SQQ E;  3GL2 A;  3L72 E;  1NYK A;  1UUV A;  1O7M A;  1PPJ E;  4QCK A;  2YFL A;  3H1K E;  1VCK A;  3GTS A;  4PV1 D;  2QJK C;  5KKZ C;  2DE6 D;  4NB9 A;  3GCE A;  4NBB D;  1Q90 C;  1NTZ E;  2YIU C;  5CXM A;  2NWF A;  4NBB A;  1EG9 A;  2B24 A;  3H1L E;  1EZV E;  3BCC E;  5HL4 A;  2HMJ A;  2DE7 D;  2QJY C;  4QDF B;  4HM6 A;  4NB9 D;  4QDF A;  1Z01 A;  1O7H A;  1PP9 E;  1SQB E;  1KYO E;  4NBA A;  3GKE A;  3VMH D;  4OGQ D;  4PD4 E;  4QUQ A;  1SQX E;  2E76 D;  2Q3W A;  1Z03 A;  4NBC A;  3L73 E;  2GBW A;  4U3F E;  2NUM A;  2HMO A;  1SQP E;  2E74 D;  2DE6 A;  1L0L E;  2CKF A;  4NBF D;  4HM0 A;  2HML A;  2A06 E;  3DQY A;  3H1H E;  4NB8 D;  2IBZ E;  4NBA D;  4AIV A;  2BMO A;  1VF5 D;  3GKQ A;  4NBE A;  2FYN C;  3GOB A;  3VMI A;  2YFJ A;  2XSH A;  1L0N E;  3L75 E;  4HM5 A;  2NUK A;  1VM9 A;  3GTE A;  3VMG D;  3AZC A;  2E75 D;  5AEU A;  1SQV E;  2I7F A;  3VMG A;  2HMK A;  3VMH A;  1O7N A;  2YVJ B;  4NBF A;  4HM7 A;  3EN1 A;  4HKV A;  3FOU A;  2XSO A;  1NU1 E;  4NBG A;  1RFS A;  3L70 E;  2JZA A;  1RIE A;  4HM1 A;  2QPZ A;  2ZYL A;  3H1I E;  4P1C H;  1BCC E;  2HMM A;  1NDO A;  1KB9 E;  1ZRT E;  3VCP A;  3N0Q A;  2JO6 A; 
#chains in the Genus database with same CATH topology
 1UUW A;  2XRX A;  2DE5 D;  2XR8 A;  2FYU E;  4H44 D;  4NBC D;  3CXH E;  4QDC A;  2NVE A;  4EMJ B;  1O7W A;  1NTM E;  4HM3 A;  2E4P A;  4P1B H;  3GZX A;  2BMQ A;  2B1X A;  4HM2 A;  5BOK A;  1O7G A;  4NBE D;  1ULI A;  4H13 D;  1WW9 A;  2NVF A;  4NBG D;  3L71 E;  3D89 A;  1G8K B;  5KLV E;  3VCA A;  2GBX A;  3GL0 A;  3GB4 A;  2HMN A;  3EQQ A;  5KLI C;  3TGU E;  4H0L D;  1NTK E;  2ZT9 D;  1O7P A;  4NBD A;  1FQT A;  1WQL A;  2DE5 A;  1JM1 A;  2D2C D;  4NBD D;  3GCF A;  2BMR A;  3CX5 E;  1Z02 A;  4HM4 A;  4HM8 A;  4QDD A;  3C0D A;  4AAY B;  2QJP C;  4QUR A;  4NBH D;  2BCC E;  4NBH A;  2E4Q A;  3CWB E;  2DE7 A;  3GZY A;  3VMI D;  1BE3 E;  3H1J E;  5AEW A;  1P84 E;  2NVG A;  1ULJ A;  4HJL A;  3L74 E;  2YFI A;  4NB8 A;  1G8J B;  4QUP A;  1SJG A;  1SQQ E;  3GL2 A;  3L72 E;  1NYK A;  1UUV A;  1O7M A;  1PPJ E;  4QCK A;  2YFL A;  3H1K E;  1VCK A;  3GTS A;  4PV1 D;  2QJK C;  5KKZ C;  2DE6 D;  4NB9 A;  3GCE A;  4NBB D;  1Q90 C;  1NTZ E;  2YIU C;  5CXM A;  2NWF A;  4NBB A;  1EG9 A;  2B24 A;  3H1L E;  1EZV E;  3BCC E;  5HL4 A;  2HMJ A;  2DE7 D;  2QJY C;  4QDF B;  4HM6 A;  4NB9 D;  4QDF A;  1Z01 A;  1O7H A;  1PP9 E;  1SQB E;  1KYO E;  4NBA A;  3GKE A;  3VMH D;  4OGQ D;  4PD4 E;  4QUQ A;  1SQX E;  2E76 D;  2Q3W A;  1Z03 A;  4NBC A;  3L73 E;  2GBW A;  4U3F E;  2NUM A;  2HMO A;  1SQP E;  2E74 D;  2DE6 A;  1L0L E;  2CKF A;  4NBF D;  4HM0 A;  2HML A;  2A06 E;  3DQY A;  3H1H E;  4NB8 D;  2IBZ E;  4NBA D;  4AIV A;  2BMO A;  1VF5 D;  3GKQ A;  4NBE A;  2FYN C;  3GOB A;  3VMI A;  2YFJ A;  2XSH A;  1L0N E;  3L75 E;  4HM5 A;  2NUK A;  1VM9 A;  3GTE A;  3VMG D;  3AZC A;  2E75 D;  5AEU A;  1SQV E;  2I7F A;  3VMG A;  2HMK A;  3VMH A;  1O7N A;  2YVJ B;  4NBF A;  4HM7 A;  3EN1 A;  4HKV A;  3FOU A;  2XSO A;  1NU1 E;  4NBG A;  1RFS A;  3L70 E;  2JZA A;  1RIE A;  4HM1 A;  2QPZ A;  2ZYL A;  3H1I E;  4P1C H;  1BCC E;  2HMM A;  1NDO A;  1KB9 E;  1ZRT E;  3VCP A;  3N0Q A;  2JO6 A; 
#chains in the Genus database with same CATH homology
 1UUW A;  2XRX A;  2DE5 D;  2XR8 A;  2FYU E;  4H44 D;  4NBC D;  3CXH E;  4QDC A;  2NVE A;  4EMJ B;  1O7W A;  1NTM E;  4HM3 A;  2E4P A;  4P1B H;  3GZX A;  2BMQ A;  2B1X A;  4HM2 A;  5BOK A;  1O7G A;  4NBE D;  1ULI A;  4H13 D;  1WW9 A;  2NVF A;  4NBG D;  3L71 E;  3D89 A;  1G8K B;  5KLV E;  3VCA A;  2GBX A;  3GL0 A;  3GB4 A;  2HMN A;  3EQQ A;  5KLI C;  3TGU E;  4H0L D;  1NTK E;  2ZT9 D;  1O7P A;  4NBD A;  1FQT A;  1WQL A;  2DE5 A;  1JM1 A;  2D2C D;  4NBD D;  3GCF A;  2BMR A;  3CX5 E;  1Z02 A;  4HM4 A;  4HM8 A;  4QDD A;  3C0D A;  4AAY B;  2QJP C;  4QUR A;  4NBH D;  2BCC E;  4NBH A;  2E4Q A;  3CWB E;  2DE7 A;  3GZY A;  3VMI D;  1BE3 E;  3H1J E;  5AEW A;  1P84 E;  2NVG A;  1ULJ A;  4HJL A;  3L74 E;  2YFI A;  4NB8 A;  1G8J B;  4QUP A;  1SJG A;  1SQQ E;  3GL2 A;  3L72 E;  1NYK A;  1UUV A;  1O7M A;  1PPJ E;  4QCK A;  2YFL A;  3H1K E;  1VCK A;  3GTS A;  4PV1 D;  2QJK C;  5KKZ C;  2DE6 D;  4NB9 A;  3GCE A;  4NBB D;  1Q90 C;  1NTZ E;  2YIU C;  5CXM A;  2NWF A;  4NBB A;  1EG9 A;  2B24 A;  3H1L E;  1EZV E;  3BCC E;  5HL4 A;  2HMJ A;  2DE7 D;  2QJY C;  4QDF B;  4HM6 A;  4NB9 D;  4QDF A;  1Z01 A;  1O7H A;  1PP9 E;  1SQB E;  1KYO E;  4NBA A;  3GKE A;  3VMH D;  4OGQ D;  4PD4 E;  4QUQ A;  1SQX E;  2E76 D;  2Q3W A;  1Z03 A;  4NBC A;  3L73 E;  2GBW A;  4U3F E;  2NUM A;  2HMO A;  1SQP E;  2E74 D;  2DE6 A;  1L0L E;  2CKF A;  4NBF D;  4HM0 A;  2HML A;  2A06 E;  3DQY A;  3H1H E;  4NB8 D;  2IBZ E;  4NBA D;  4AIV A;  2BMO A;  1VF5 D;  3GKQ A;  4NBE A;  2FYN C;  3GOB A;  3VMI A;  2YFJ A;  2XSH A;  1L0N E;  3L75 E;  4HM5 A;  2NUK A;  1VM9 A;  3GTE A;  3VMG D;  3AZC A;  2E75 D;  5AEU A;  1SQV E;  2I7F A;  3VMG A;  2HMK A;  3VMH A;  1O7N A;  2YVJ B;  4NBF A;  4HM7 A;  3EN1 A;  4HKV A;  3FOU A;  2XSO A;  1NU1 E;  4NBG A;  1RFS A;  3L70 E;  2JZA A;  1RIE A;  4HM1 A;  2QPZ A;  2ZYL A;  3H1I E;  4P1C H;  1BCC E;  2HMM A;  1NDO A;  1KB9 E;  1ZRT E;  3VCP A;  3N0Q A;  2JO6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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