2BMRA

The crystal structure of nitrobenzene dioxygenase in complex with 3- nitrotoluene
Total Genus 158
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
437
structure length
437
Chain Sequence
YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords OXYGENASE-ALPHA NBDO
publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
source organism Comamonas sp.
molecule tags Oxidoreductase
total genus 158
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmrA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmrA01
2XR8A 3H1HE 3H1LE 3L70E 4NBFD 2DE6D 1Q90C 4HM8A 5AEUA 4HKVA 3N0QA 2QJYC 1BCCE 1EZVE 1NYKA 3GOBA 1G8KB 1O7HA 2FYNC 2YFIA 2FYUE 1SQVE 1O7PA 4NBCD 4H0LD 1WW9A 2YVJB 1JM1A 3VMIA 4NBGD 2JO6A 2NWFA 3BCCE 1UUWA 4AIVA 4NBFA 1PPJE 4OGQD 2XSOA 2E74D 3L73E 1UUVA 3TGUE 3VMHA 5KLIC 2E76D 4NB9D 2I7FA 4HM7A 4PD4E 5BOKA 2DE7D 2HMOA 2XRXA 4QDFA 3CXHE 4NBBD 2BMOA 1SQXE 1L0NE 3GL0A 1RFSA 4NB8D 3L74E 3D89A 5CXMA 1VF5D 3VCAA 3EN1A 1Z02A 4NBDD 3VCPA 3GB4A 4NBHD 1O7GA 4NB9A 1L0LE 2HMNA 3VMGD 4P1BH 2DE7A 2YFJA 5KKZC 4AAYB 3EQQA 1SQBE 3AZCA 4HM1A 2NVGA 5HL4A 2DE6A 4H13D 3GCFA 2BCCE 4H44D 1SQPE 1ULJA 2NVFA 4QDFB 2QPZA 2YFLA 2JZAA 3GKEA 3H1JE 4HM6A 1WQLA 4HJLA 4NBDA 4NBCA 3DQYA 2Q3WA 3H1IE 1VM9A 2ZYLA 1EG9A 3VMGA 2QJKC 3GZYA 1P84E 2A06E 4QUPA 4NBGA 2HMMA 1FQTA 2NUMA 1O7NA 2DE5D 1Z03A 3C0DA 1PP9E 2BMQA 4QDDA 2NVEA 2GBXA 1KB9E 2IBZE 3GCEA 3GZXA 4U3FE 2E4QA 1SQQE 1NTZE 1NTKE 1O7WA 3GKQA 4QDCA 3CX5E 1KYOE 3VMID 1BE3E 2B24A 2D2CD 1RIEA 1VCKA 3L75E 1Z01A 3L72E 4HM5A 1ULIA 4NBBA 1G8JB 4QURA 2XSHA 4NBED 3VMHD 4HM0A 4P1CH 4NB8A 3GL2A 2ZT9D 4NBAD 1NDOA 1O7MA 2QJPC 2DE5A 2B1XA 5AEWA 4NBHA 1NU1E 2YIUC 5KLVE 2HMJA 2HMKA 3H1KE 2GBWA 2HMLA 2NUKA 3GTSA 4HM4A 1ZRTE 1SJGA 3GTEA 2CKFA 4QCKA 4EMJB 3L71E 3FOUA 1NTME 4PV1D 4QUQA 4NBEA 4HM2A 2E4PA 4NBAA 3CWBE 4HM3A 2BMRA 2E75D
chains in the Genus database with same CATH superfamily
2XR8A 3H1HE 3H1LE 3L70E 4NBFD 2DE6D 1Q90C 4HM8A 5AEUA 4HKVA 3N0QA 2QJYC 1BCCE 1EZVE 1NYKA 3GOBA 1G8KB 1O7HA 2FYNC 2YFIA 2FYUE 1SQVE 1O7PA 4NBCD 4H0LD 1WW9A 2YVJB 1JM1A 3VMIA 4NBGD 2JO6A 2NWFA 3BCCE 1UUWA 4AIVA 4NBFA 1PPJE 4OGQD 2XSOA 2E74D 3L73E 1UUVA 3TGUE 3VMHA 5KLIC 2E76D 4NB9D 2I7FA 4HM7A 4PD4E 5BOKA 2DE7D 2HMOA 2XRXA 4QDFA 3CXHE 4NBBD 2BMOA 1SQXE 1L0NE 3GL0A 1RFSA 4NB8D 3L74E 3D89A 5CXMA 1VF5D 3VCAA 3EN1A 1Z02A 4NBDD 3VCPA 3GB4A 4NBHD 1O7GA 4NB9A 1L0LE 2HMNA 3VMGD 4P1BH 2DE7A 2YFJA 5KKZC 4AAYB 3EQQA 1SQBE 3AZCA 4HM1A 2NVGA 5HL4A 2DE6A 4H13D 3GCFA 2BCCE 4H44D 1SQPE 1ULJA 2NVFA 4QDFB 2QPZA 2YFLA 2JZAA 3GKEA 3H1JE 4HM6A 1WQLA 4HJLA 4NBDA 4NBCA 3DQYA 2Q3WA 3H1IE 1VM9A 2ZYLA 1EG9A 3VMGA 2QJKC 3GZYA 1P84E 2A06E 4QUPA 4NBGA 2HMMA 1FQTA 2NUMA 1O7NA 2DE5D 1Z03A 3C0DA 1PP9E 2BMQA 4QDDA 2NVEA 2GBXA 1KB9E 2IBZE 3GCEA 3GZXA 4U3FE 2E4QA 1SQQE 1NTZE 1NTKE 1O7WA 3GKQA 4QDCA 3CX5E 1KYOE 3VMID 1BE3E 2B24A 2D2CD 1RIEA 1VCKA 3L75E 1Z01A 3L72E 4HM5A 1ULIA 4NBBA 1G8JB 4QURA 2XSHA 4NBED 3VMHD 4HM0A 4P1CH 4NB8A 3GL2A 2ZT9D 4NBAD 1NDOA 1O7MA 2QJPC 2DE5A 2B1XA 5AEWA 4NBHA 1NU1E 2YIUC 5KLVE 2HMJA 2HMKA 3H1KE 2GBWA 2HMLA 2NUKA 3GTSA 4HM4A 1ZRTE 1SJGA 3GTEA 2CKFA 4QCKA 4EMJB 3L71E 3FOUA 1NTME 4PV1D 4QUQA 4NBEA 4HM2A 2E4PA 4NBAA 3CWBE 4HM3A 2BMRA 2E75D
chains in the Genus database with same CATH topology
2XR8A 3H1HE 3H1LE 3L70E 4NBFD 2DE6D 1Q90C 4HM8A 5AEUA 4HKVA 3N0QA 2QJYC 1BCCE 1EZVE 1NYKA 3GOBA 1G8KB 1O7HA 2FYNC 2YFIA 2FYUE 1SQVE 1O7PA 4NBCD 4H0LD 1WW9A 2YVJB 1JM1A 3VMIA 4NBGD 2JO6A 2NWFA 3BCCE 1UUWA 4AIVA 4NBFA 1PPJE 4OGQD 2XSOA 2E74D 3L73E 1UUVA 3TGUE 3VMHA 5KLIC 2E76D 4NB9D 2I7FA 4HM7A 4PD4E 5BOKA 2DE7D 2HMOA 2XRXA 4QDFA 3CXHE 4NBBD 2BMOA 1SQXE 1L0NE 3GL0A 1RFSA 4NB8D 3L74E 3D89A 5CXMA 1VF5D 3VCAA 3EN1A 1Z02A 4NBDD 3VCPA 3GB4A 4NBHD 1O7GA 4NB9A 1L0LE 2HMNA 3VMGD 4P1BH 2DE7A 2YFJA 5KKZC 4AAYB 3EQQA 1SQBE 3AZCA 4HM1A 2NVGA 5HL4A 2DE6A 4H13D 3GCFA 2BCCE 4H44D 1SQPE 1ULJA 2NVFA 4QDFB 2QPZA 2YFLA 2JZAA 3GKEA 3H1JE 4HM6A 1WQLA 4HJLA 4NBDA 4NBCA 3DQYA 2Q3WA 3H1IE 1VM9A 2ZYLA 1EG9A 3VMGA 2QJKC 3GZYA 1P84E 2A06E 4QUPA 4NBGA 2HMMA 1FQTA 2NUMA 1O7NA 2DE5D 1Z03A 3C0DA 1PP9E 2BMQA 4QDDA 2NVEA 2GBXA 1KB9E 2IBZE 3GCEA 3GZXA 4U3FE 2E4QA 1SQQE 1NTZE 1NTKE 1O7WA 3GKQA 4QDCA 3CX5E 1KYOE 3VMID 1BE3E 2B24A 2D2CD 1RIEA 1VCKA 3L75E 1Z01A 3L72E 4HM5A 1ULIA 4NBBA 1G8JB 4QURA 2XSHA 4NBED 3VMHD 4HM0A 4P1CH 4NB8A 3GL2A 2ZT9D 4NBAD 1NDOA 1O7MA 2QJPC 2DE5A 2B1XA 5AEWA 4NBHA 1NU1E 2YIUC 5KLVE 2HMJA 2HMKA 3H1KE 2GBWA 2HMLA 2NUKA 3GTSA 4HM4A 1ZRTE 1SJGA 3GTEA 2CKFA 4QCKA 4EMJB 3L71E 3FOUA 1NTME 4PV1D 4QUQA 4NBEA 4HM2A 2E4PA 4NBAA 3CWBE 4HM3A 2BMRA 2E75D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XR8 A;  3H1H E;  3H1L E;  3L70 E;  4NBF D;  2DE6 D;  1Q90 C;  4HM8 A;  5AEU A;  4HKV A;  3N0Q A;  2QJY C;  1BCC E;  1EZV E;  1NYK A;  3GOB A;  1G8K B;  1O7H A;  2FYN C;  2YFI A;  2FYU E;  1SQV E;  1O7P A;  4NBC D;  4H0L D;  1WW9 A;  2YVJ B;  1JM1 A;  3VMI A;  4NBG D;  2JO6 A;  2NWF A;  3BCC E;  1UUW A;  4AIV A;  4NBF A;  1PPJ E;  4OGQ D;  2XSO A;  2E74 D;  3L73 E;  1UUV A;  3TGU E;  3VMH A;  5KLI C;  2E76 D;  4NB9 D;  2I7F A;  4HM7 A;  4PD4 E;  5BOK A;  2DE7 D;  2HMO A;  2XRX A;  4QDF A;  3CXH E;  4NBB D;  2BMO A;  1SQX E;  1L0N E;  3GL0 A;  1RFS A;  4NB8 D;  3L74 E;  3D89 A;  5CXM A;  1VF5 D;  3VCA A;  3EN1 A;  1Z02 A;  4NBD D;  3VCP A;  3GB4 A;  4NBH D;  1O7G A;  4NB9 A;  1L0L E;  2HMN A;  3VMG D;  4P1B H;  2DE7 A;  2YFJ A;  5KKZ C;  4AAY B;  3EQQ A;  1SQB E;  3AZC A;  4HM1 A;  2NVG A;  5HL4 A;  2DE6 A;  4H13 D;  3GCF A;  2BCC E;  4H44 D;  1SQP E;  1ULJ A;  2NVF A;  4QDF B;  2QPZ A;  2YFL A;  2JZA A;  3GKE A;  3H1J E;  4HM6 A;  1WQL A;  4HJL A;  4NBD A;  4NBC A;  3DQY A;  2Q3W A;  3H1I E;  1VM9 A;  2ZYL A;  1EG9 A;  3VMG A;  2QJK C;  3GZY A;  1P84 E;  2A06 E;  4QUP A;  4NBG A;  2HMM A;  1FQT A;  2NUM A;  1O7N A;  2DE5 D;  1Z03 A;  3C0D A;  1PP9 E;  2BMQ A;  4QDD A;  2NVE A;  2GBX A;  1KB9 E;  2IBZ E;  3GCE A;  3GZX A;  4U3F E;  2E4Q A;  1SQQ E;  1NTZ E;  1NTK E;  1O7W A;  3GKQ A;  4QDC A;  3CX5 E;  1KYO E;  3VMI D;  1BE3 E;  2B24 A;  2D2C D;  1RIE A;  1VCK A;  3L75 E;  1Z01 A;  3L72 E;  4HM5 A;  1ULI A;  4NBB A;  1G8J B;  4QUR A;  2XSH A;  4NBE D;  3VMH D;  4HM0 A;  4P1C H;  4NB8 A;  3GL2 A;  2ZT9 D;  4NBA D;  1NDO A;  1O7M A;  2QJP C;  2DE5 A;  2B1X A;  5AEW A;  4NBH A;  1NU1 E;  2YIU C;  5KLV E;  2HMJ A;  2HMK A;  3H1K E;  2GBW A;  2HML A;  2NUK A;  3GTS A;  4HM4 A;  1ZRT E;  1SJG A;  3GTE A;  2CKF A;  4QCK A;  4EMJ B;  3L71 E;  3FOU A;  1NTM E;  4PV1 D;  4QUQ A;  4NBE A;  4HM2 A;  2E4P A;  4NBA A;  3CWB E;  4HM3 A;  2BMR A;  2E75 D; 
#chains in the Genus database with same CATH topology
 2XR8 A;  3H1H E;  3H1L E;  3L70 E;  4NBF D;  2DE6 D;  1Q90 C;  4HM8 A;  5AEU A;  4HKV A;  3N0Q A;  2QJY C;  1BCC E;  1EZV E;  1NYK A;  3GOB A;  1G8K B;  1O7H A;  2FYN C;  2YFI A;  2FYU E;  1SQV E;  1O7P A;  4NBC D;  4H0L D;  1WW9 A;  2YVJ B;  1JM1 A;  3VMI A;  4NBG D;  2JO6 A;  2NWF A;  3BCC E;  1UUW A;  4AIV A;  4NBF A;  1PPJ E;  4OGQ D;  2XSO A;  2E74 D;  3L73 E;  1UUV A;  3TGU E;  3VMH A;  5KLI C;  2E76 D;  4NB9 D;  2I7F A;  4HM7 A;  4PD4 E;  5BOK A;  2DE7 D;  2HMO A;  2XRX A;  4QDF A;  3CXH E;  4NBB D;  2BMO A;  1SQX E;  1L0N E;  3GL0 A;  1RFS A;  4NB8 D;  3L74 E;  3D89 A;  5CXM A;  1VF5 D;  3VCA A;  3EN1 A;  1Z02 A;  4NBD D;  3VCP A;  3GB4 A;  4NBH D;  1O7G A;  4NB9 A;  1L0L E;  2HMN A;  3VMG D;  4P1B H;  2DE7 A;  2YFJ A;  5KKZ C;  4AAY B;  3EQQ A;  1SQB E;  3AZC A;  4HM1 A;  2NVG A;  5HL4 A;  2DE6 A;  4H13 D;  3GCF A;  2BCC E;  4H44 D;  1SQP E;  1ULJ A;  2NVF A;  4QDF B;  2QPZ A;  2YFL A;  2JZA A;  3GKE A;  3H1J E;  4HM6 A;  1WQL A;  4HJL A;  4NBD A;  4NBC A;  3DQY A;  2Q3W A;  3H1I E;  1VM9 A;  2ZYL A;  1EG9 A;  3VMG A;  2QJK C;  3GZY A;  1P84 E;  2A06 E;  4QUP A;  4NBG A;  2HMM A;  1FQT A;  2NUM A;  1O7N A;  2DE5 D;  1Z03 A;  3C0D A;  1PP9 E;  2BMQ A;  4QDD A;  2NVE A;  2GBX A;  1KB9 E;  2IBZ E;  3GCE A;  3GZX A;  4U3F E;  2E4Q A;  1SQQ E;  1NTZ E;  1NTK E;  1O7W A;  3GKQ A;  4QDC A;  3CX5 E;  1KYO E;  3VMI D;  1BE3 E;  2B24 A;  2D2C D;  1RIE A;  1VCK A;  3L75 E;  1Z01 A;  3L72 E;  4HM5 A;  1ULI A;  4NBB A;  1G8J B;  4QUR A;  2XSH A;  4NBE D;  3VMH D;  4HM0 A;  4P1C H;  4NB8 A;  3GL2 A;  2ZT9 D;  4NBA D;  1NDO A;  1O7M A;  2QJP C;  2DE5 A;  2B1X A;  5AEW A;  4NBH A;  1NU1 E;  2YIU C;  5KLV E;  2HMJ A;  2HMK A;  3H1K E;  2GBW A;  2HML A;  2NUK A;  3GTS A;  4HM4 A;  1ZRT E;  1SJG A;  3GTE A;  2CKF A;  4QCK A;  4EMJ B;  3L71 E;  3FOU A;  1NTM E;  4PV1 D;  4QUQ A;  4NBE A;  4HM2 A;  2E4P A;  4NBA A;  3CWB E;  4HM3 A;  2BMR A;  2E75 D; 
#chains in the Genus database with same CATH homology
 2XR8 A;  3H1H E;  3H1L E;  3L70 E;  4NBF D;  2DE6 D;  1Q90 C;  4HM8 A;  5AEU A;  4HKV A;  3N0Q A;  2QJY C;  1BCC E;  1EZV E;  1NYK A;  3GOB A;  1G8K B;  1O7H A;  2FYN C;  2YFI A;  2FYU E;  1SQV E;  1O7P A;  4NBC D;  4H0L D;  1WW9 A;  2YVJ B;  1JM1 A;  3VMI A;  4NBG D;  2JO6 A;  2NWF A;  3BCC E;  1UUW A;  4AIV A;  4NBF A;  1PPJ E;  4OGQ D;  2XSO A;  2E74 D;  3L73 E;  1UUV A;  3TGU E;  3VMH A;  5KLI C;  2E76 D;  4NB9 D;  2I7F A;  4HM7 A;  4PD4 E;  5BOK A;  2DE7 D;  2HMO A;  2XRX A;  4QDF A;  3CXH E;  4NBB D;  2BMO A;  1SQX E;  1L0N E;  3GL0 A;  1RFS A;  4NB8 D;  3L74 E;  3D89 A;  5CXM A;  1VF5 D;  3VCA A;  3EN1 A;  1Z02 A;  4NBD D;  3VCP A;  3GB4 A;  4NBH D;  1O7G A;  4NB9 A;  1L0L E;  2HMN A;  3VMG D;  4P1B H;  2DE7 A;  2YFJ A;  5KKZ C;  4AAY B;  3EQQ A;  1SQB E;  3AZC A;  4HM1 A;  2NVG A;  5HL4 A;  2DE6 A;  4H13 D;  3GCF A;  2BCC E;  4H44 D;  1SQP E;  1ULJ A;  2NVF A;  4QDF B;  2QPZ A;  2YFL A;  2JZA A;  3GKE A;  3H1J E;  4HM6 A;  1WQL A;  4HJL A;  4NBD A;  4NBC A;  3DQY A;  2Q3W A;  3H1I E;  1VM9 A;  2ZYL A;  1EG9 A;  3VMG A;  2QJK C;  3GZY A;  1P84 E;  2A06 E;  4QUP A;  4NBG A;  2HMM A;  1FQT A;  2NUM A;  1O7N A;  2DE5 D;  1Z03 A;  3C0D A;  1PP9 E;  2BMQ A;  4QDD A;  2NVE A;  2GBX A;  1KB9 E;  2IBZ E;  3GCE A;  3GZX A;  4U3F E;  2E4Q A;  1SQQ E;  1NTZ E;  1NTK E;  1O7W A;  3GKQ A;  4QDC A;  3CX5 E;  1KYO E;  3VMI D;  1BE3 E;  2B24 A;  2D2C D;  1RIE A;  1VCK A;  3L75 E;  1Z01 A;  3L72 E;  4HM5 A;  1ULI A;  4NBB A;  1G8J B;  4QUR A;  2XSH A;  4NBE D;  3VMH D;  4HM0 A;  4P1C H;  4NB8 A;  3GL2 A;  2ZT9 D;  4NBA D;  1NDO A;  1O7M A;  2QJP C;  2DE5 A;  2B1X A;  5AEW A;  4NBH A;  1NU1 E;  2YIU C;  5KLV E;  2HMJ A;  2HMK A;  3H1K E;  2GBW A;  2HML A;  2NUK A;  3GTS A;  4HM4 A;  1ZRT E;  1SJG A;  3GTE A;  2CKF A;  4QCK A;  4EMJ B;  3L71 E;  3FOU A;  1NTM E;  4PV1 D;  4QUQ A;  4NBE A;  4HM2 A;  2E4P A;  4NBA A;  3CWB E;  4HM3 A;  2BMR A;  2E75 D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...