2BMRA

The crystal structure of nitrobenzene dioxygenase in complex with 3- nitrotoluene
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
437
structure length
437
Chain Sequence
b'YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords OXYGENASE-ALPHA NBDO
publication title Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
pubmed doi rcsb
source organism Comamonas sp.
molecule tags Oxidoreductase
total genus 158
structure length 437
sequence length 437
ec nomenclature
pdb deposition date 2005-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2bmrA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2bmrA01
4NBCD 4OGQD 2DE7D 4HM5A 1VM9A 1NTME 4NBDA 1RIEA 4H44D 4HM4A 4NBAA 2YFIA 3L74E 1Z02A 3GL0A 1WQLA 3H1KE 4H13D 4HJLA 2JO6A 1SQXE 3N0QA 2DE7A 2NVGA 1SQQE 4NBFD 4AIVA 1L0LE 1ZRTE 2NUKA 2BCCE 2HMKA 2XSOA 1NTZE 4PV1D 1EG9A 3CWBE 3DQYA 2NWFA 4NBDD 1PPJE 1NU1E 3GZYA 4NBAD 3GB4A 4QDCA 4NBEA 2YVJB 3VMIA 1NDOA 4HM2A 1G8JB 2XR8A 4HM7A 3GZXA 2GBXA 4HKVA 1Z01A 2NUMA 2BMQA 4PD4E 1O7GA 2I7FA 2XRXA 2HMOA 1WW9A 4NB8A 2NVEA 4AAYB 2D2CD 1Z03A 1BE3E 2E76D 1JM1A 2Q3WA 2FYUE 1KYOE 2ZYLA 3GKEA 4EMJB 2E4QA 1G8KB 3FOUA 1O7MA 1BCCE 4NBED 5AEUA 3CXHE 3VMID 4NBBD 4HM1A 2DE5A 3BCCE 3L70E 1O7HA 1SQPE 2YFLA 3AZCA 5HL4A 1ULJA 3VMHA 4NB8D 4NBBA 3VCPA 4HM6A 5KLVE 2BMOA 2HMJA 1NYKA 3H1JE 3L75E 2B24A 2HMLA 3L71E 4P1CH 2E4PA 4H0LD 4QDFA 2YFJA 1O7PA 1FQTA 5KLIC 1L0NE 1UUVA 2IBZE 2BMRA 3L72E 5AEWA 3GTEA 2DE5D 3GCFA 3GKQA 3VMGA 1P84E 2FYNC 3GL2A 1VCKA 3H1LE 2HMMA 3EN1A 1EZVE 1SQVE 4NB9A 3VMHD 4HM8A 4U3FE 4QCKA 4NBGA 1KB9E 4QUQA 3GOBA 1PP9E 4QDFB 2QPZA 2DE6A 1VF5D 2YIUC 2B1XA 5KKZC 3GCEA 2HMNA 4QUPA 2E75D 2QJKC 4NBCA 2E74D 1NTKE 1UUWA 4NBHD 3EQQA 2XSHA 1O7WA 3H1HE 4QDDA 3VMGD 1SJGA 1SQBE 2NVFA 3TGUE 4HM3A 3GTSA 4NB9D 4NBGD 4NBHA 1Q90C 2JZAA 4NBFA 3CX5E 3VCAA 4QURA 2GBWA 2QJPC 2CKFA 5CXMA 2ZT9D 2DE6D 1O7NA 3C0DA 1ULIA 2A06E 2QJYC 3H1IE 1RFSA 5BOKA 3L73E 4HM0A 4P1BH 3D89A
chains in the Genus database with same CATH superfamily
4NBCD 4OGQD 2DE7D 4HM5A 1VM9A 1NTME 4NBDA 1RIEA 4H44D 4HM4A 4NBAA 2YFIA 3L74E 1Z02A 3GL0A 1WQLA 3H1KE 4H13D 4HJLA 2JO6A 1SQXE 3N0QA 2DE7A 2NVGA 1SQQE 4NBFD 4AIVA 1L0LE 1ZRTE 2NUKA 2BCCE 2HMKA 2XSOA 1NTZE 4PV1D 1EG9A 3CWBE 3DQYA 2NWFA 4NBDD 1PPJE 1NU1E 3GZYA 4NBAD 3GB4A 4QDCA 4NBEA 2YVJB 3VMIA 1NDOA 4HM2A 1G8JB 2XR8A 4HM7A 3GZXA 2GBXA 4HKVA 1Z01A 2NUMA 2BMQA 4PD4E 1O7GA 2I7FA 2XRXA 2HMOA 1WW9A 4NB8A 2NVEA 4AAYB 2D2CD 1Z03A 1BE3E 2E76D 1JM1A 2Q3WA 2FYUE 1KYOE 2ZYLA 3GKEA 4EMJB 2E4QA 1G8KB 3FOUA 1O7MA 1BCCE 4NBED 5AEUA 3CXHE 3VMID 4NBBD 4HM1A 2DE5A 3BCCE 3L70E 1O7HA 1SQPE 2YFLA 3AZCA 5HL4A 1ULJA 3VMHA 4NB8D 4NBBA 3VCPA 4HM6A 5KLVE 2BMOA 2HMJA 1NYKA 3H1JE 3L75E 2B24A 2HMLA 3L71E 4P1CH 2E4PA 4H0LD 4QDFA 2YFJA 1O7PA 1FQTA 5KLIC 1L0NE 1UUVA 2IBZE 2BMRA 3L72E 5AEWA 3GTEA 2DE5D 3GCFA 3GKQA 3VMGA 1P84E 2FYNC 3GL2A 1VCKA 3H1LE 2HMMA 3EN1A 1EZVE 1SQVE 4NB9A 3VMHD 4HM8A 4U3FE 4QCKA 4NBGA 1KB9E 4QUQA 3GOBA 1PP9E 4QDFB 2QPZA 2DE6A 1VF5D 2YIUC 2B1XA 5KKZC 3GCEA 2HMNA 4QUPA 2E75D 2QJKC 4NBCA 2E74D 1NTKE 1UUWA 4NBHD 3EQQA 2XSHA 1O7WA 3H1HE 4QDDA 3VMGD 1SJGA 1SQBE 2NVFA 3TGUE 4HM3A 3GTSA 4NB9D 4NBGD 4NBHA 1Q90C 2JZAA 4NBFA 3CX5E 3VCAA 4QURA 2GBWA 2QJPC 2CKFA 5CXMA 2ZT9D 2DE6D 1O7NA 3C0DA 1ULIA 2A06E 2QJYC 3H1IE 1RFSA 5BOKA 3L73E 4HM0A 4P1BH 3D89A
chains in the Genus database with same CATH topology
4NBCD 4OGQD 2DE7D 4HM5A 1VM9A 1NTME 4NBDA 1RIEA 4H44D 4HM4A 4NBAA 2YFIA 3L74E 1Z02A 3GL0A 1WQLA 3H1KE 4H13D 4HJLA 2JO6A 1SQXE 3N0QA 2DE7A 2NVGA 1SQQE 4NBFD 4AIVA 1L0LE 1ZRTE 2NUKA 2BCCE 2HMKA 2XSOA 1NTZE 4PV1D 1EG9A 3CWBE 3DQYA 2NWFA 4NBDD 1PPJE 1NU1E 3GZYA 4NBAD 3GB4A 4QDCA 4NBEA 2YVJB 3VMIA 1NDOA 4HM2A 1G8JB 2XR8A 4HM7A 3GZXA 2GBXA 4HKVA 1Z01A 2NUMA 2BMQA 4PD4E 1O7GA 2I7FA 2XRXA 2HMOA 1WW9A 4NB8A 2NVEA 4AAYB 2D2CD 1Z03A 1BE3E 2E76D 1JM1A 2Q3WA 2FYUE 1KYOE 2ZYLA 3GKEA 4EMJB 2E4QA 1G8KB 3FOUA 1O7MA 1BCCE 4NBED 5AEUA 3CXHE 3VMID 4NBBD 4HM1A 2DE5A 3BCCE 3L70E 1O7HA 1SQPE 2YFLA 3AZCA 5HL4A 1ULJA 3VMHA 4NB8D 4NBBA 3VCPA 4HM6A 5KLVE 2BMOA 2HMJA 1NYKA 3H1JE 3L75E 2B24A 2HMLA 3L71E 4P1CH 2E4PA 4H0LD 4QDFA 2YFJA 1O7PA 1FQTA 5KLIC 1L0NE 1UUVA 2IBZE 2BMRA 3L72E 5AEWA 3GTEA 2DE5D 3GCFA 3GKQA 3VMGA 1P84E 2FYNC 3GL2A 1VCKA 3H1LE 2HMMA 3EN1A 1EZVE 1SQVE 4NB9A 3VMHD 4HM8A 4U3FE 4QCKA 4NBGA 1KB9E 4QUQA 3GOBA 1PP9E 4QDFB 2QPZA 2DE6A 1VF5D 2YIUC 2B1XA 5KKZC 3GCEA 2HMNA 4QUPA 2E75D 2QJKC 4NBCA 2E74D 1NTKE 1UUWA 4NBHD 3EQQA 2XSHA 1O7WA 3H1HE 4QDDA 3VMGD 1SJGA 1SQBE 2NVFA 3TGUE 4HM3A 3GTSA 4NB9D 4NBGD 4NBHA 1Q90C 2JZAA 4NBFA 3CX5E 3VCAA 4QURA 2GBWA 2QJPC 2CKFA 5CXMA 2ZT9D 2DE6D 1O7NA 3C0DA 1ULIA 2A06E 2QJYC 3H1IE 1RFSA 5BOKA 3L73E 4HM0A 4P1BH 3D89A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NBC D;  4OGQ D;  2DE7 D;  4HM5 A;  1VM9 A;  1NTM E;  4NBD A;  1RIE A;  4H44 D;  4HM4 A;  4NBA A;  2YFI A;  3L74 E;  1Z02 A;  3GL0 A;  1WQL A;  3H1K E;  4H13 D;  4HJL A;  2JO6 A;  1SQX E;  3N0Q A;  2DE7 A;  2NVG A;  1SQQ E;  4NBF D;  4AIV A;  1L0L E;  1ZRT E;  2NUK A;  2BCC E;  2HMK A;  2XSO A;  1NTZ E;  4PV1 D;  1EG9 A;  3CWB E;  3DQY A;  2NWF A;  4NBD D;  1PPJ E;  1NU1 E;  3GZY A;  4NBA D;  3GB4 A;  4QDC A;  4NBE A;  2YVJ B;  3VMI A;  1NDO A;  4HM2 A;  1G8J B;  2XR8 A;  4HM7 A;  3GZX A;  2GBX A;  4HKV A;  1Z01 A;  2NUM A;  2BMQ A;  4PD4 E;  1O7G A;  2I7F A;  2XRX A;  2HMO A;  1WW9 A;  4NB8 A;  2NVE A;  4AAY B;  2D2C D;  1Z03 A;  1BE3 E;  2E76 D;  1JM1 A;  2Q3W A;  2FYU E;  1KYO E;  2ZYL A;  3GKE A;  4EMJ B;  2E4Q A;  1G8K B;  3FOU A;  1O7M A;  1BCC E;  4NBE D;  5AEU A;  3CXH E;  3VMI D;  4NBB D;  4HM1 A;  2DE5 A;  3BCC E;  3L70 E;  1O7H A;  1SQP E;  2YFL A;  3AZC A;  5HL4 A;  1ULJ A;  3VMH A;  4NB8 D;  4NBB A;  3VCP A;  4HM6 A;  5KLV E;  2BMO A;  2HMJ A;  1NYK A;  3H1J E;  3L75 E;  2B24 A;  2HML A;  3L71 E;  4P1C H;  2E4P A;  4H0L D;  4QDF A;  2YFJ A;  1O7P A;  1FQT A;  5KLI C;  1L0N E;  1UUV A;  2IBZ E;  2BMR A;  3L72 E;  5AEW A;  3GTE A;  2DE5 D;  3GCF A;  3GKQ A;  3VMG A;  1P84 E;  2FYN C;  3GL2 A;  1VCK A;  3H1L E;  2HMM A;  3EN1 A;  1EZV E;  1SQV E;  4NB9 A;  3VMH D;  4HM8 A;  4U3F E;  4QCK A;  4NBG A;  1KB9 E;  4QUQ A;  3GOB A;  1PP9 E;  4QDF B;  2QPZ A;  2DE6 A;  1VF5 D;  2YIU C;  2B1X A;  5KKZ C;  3GCE A;  2HMN A;  4QUP A;  2E75 D;  2QJK C;  4NBC A;  2E74 D;  1NTK E;  1UUW A;  4NBH D;  3EQQ A;  2XSH A;  1O7W A;  3H1H E;  4QDD A;  3VMG D;  1SJG A;  1SQB E;  2NVF A;  3TGU E;  4HM3 A;  3GTS A;  4NB9 D;  4NBG D;  4NBH A;  1Q90 C;  2JZA A;  4NBF A;  3CX5 E;  3VCA A;  4QUR A;  2GBW A;  2QJP C;  2CKF A;  5CXM A;  2ZT9 D;  2DE6 D;  1O7N A;  3C0D A;  1ULI A;  2A06 E;  2QJY C;  3H1I E;  1RFS A;  5BOK A;  3L73 E;  4HM0 A;  4P1B H;  3D89 A; 
#chains in the Genus database with same CATH topology
 4NBC D;  4OGQ D;  2DE7 D;  4HM5 A;  1VM9 A;  1NTM E;  4NBD A;  1RIE A;  4H44 D;  4HM4 A;  4NBA A;  2YFI A;  3L74 E;  1Z02 A;  3GL0 A;  1WQL A;  3H1K E;  4H13 D;  4HJL A;  2JO6 A;  1SQX E;  3N0Q A;  2DE7 A;  2NVG A;  1SQQ E;  4NBF D;  4AIV A;  1L0L E;  1ZRT E;  2NUK A;  2BCC E;  2HMK A;  2XSO A;  1NTZ E;  4PV1 D;  1EG9 A;  3CWB E;  3DQY A;  2NWF A;  4NBD D;  1PPJ E;  1NU1 E;  3GZY A;  4NBA D;  3GB4 A;  4QDC A;  4NBE A;  2YVJ B;  3VMI A;  1NDO A;  4HM2 A;  1G8J B;  2XR8 A;  4HM7 A;  3GZX A;  2GBX A;  4HKV A;  1Z01 A;  2NUM A;  2BMQ A;  4PD4 E;  1O7G A;  2I7F A;  2XRX A;  2HMO A;  1WW9 A;  4NB8 A;  2NVE A;  4AAY B;  2D2C D;  1Z03 A;  1BE3 E;  2E76 D;  1JM1 A;  2Q3W A;  2FYU E;  1KYO E;  2ZYL A;  3GKE A;  4EMJ B;  2E4Q A;  1G8K B;  3FOU A;  1O7M A;  1BCC E;  4NBE D;  5AEU A;  3CXH E;  3VMI D;  4NBB D;  4HM1 A;  2DE5 A;  3BCC E;  3L70 E;  1O7H A;  1SQP E;  2YFL A;  3AZC A;  5HL4 A;  1ULJ A;  3VMH A;  4NB8 D;  4NBB A;  3VCP A;  4HM6 A;  5KLV E;  2BMO A;  2HMJ A;  1NYK A;  3H1J E;  3L75 E;  2B24 A;  2HML A;  3L71 E;  4P1C H;  2E4P A;  4H0L D;  4QDF A;  2YFJ A;  1O7P A;  1FQT A;  5KLI C;  1L0N E;  1UUV A;  2IBZ E;  2BMR A;  3L72 E;  5AEW A;  3GTE A;  2DE5 D;  3GCF A;  3GKQ A;  3VMG A;  1P84 E;  2FYN C;  3GL2 A;  1VCK A;  3H1L E;  2HMM A;  3EN1 A;  1EZV E;  1SQV E;  4NB9 A;  3VMH D;  4HM8 A;  4U3F E;  4QCK A;  4NBG A;  1KB9 E;  4QUQ A;  3GOB A;  1PP9 E;  4QDF B;  2QPZ A;  2DE6 A;  1VF5 D;  2YIU C;  2B1X A;  5KKZ C;  3GCE A;  2HMN A;  4QUP A;  2E75 D;  2QJK C;  4NBC A;  2E74 D;  1NTK E;  1UUW A;  4NBH D;  3EQQ A;  2XSH A;  1O7W A;  3H1H E;  4QDD A;  3VMG D;  1SJG A;  1SQB E;  2NVF A;  3TGU E;  4HM3 A;  3GTS A;  4NB9 D;  4NBG D;  4NBH A;  1Q90 C;  2JZA A;  4NBF A;  3CX5 E;  3VCA A;  4QUR A;  2GBW A;  2QJP C;  2CKF A;  5CXM A;  2ZT9 D;  2DE6 D;  1O7N A;  3C0D A;  1ULI A;  2A06 E;  2QJY C;  3H1I E;  1RFS A;  5BOK A;  3L73 E;  4HM0 A;  4P1B H;  3D89 A; 
#chains in the Genus database with same CATH homology
 4NBC D;  4OGQ D;  2DE7 D;  4HM5 A;  1VM9 A;  1NTM E;  4NBD A;  1RIE A;  4H44 D;  4HM4 A;  4NBA A;  2YFI A;  3L74 E;  1Z02 A;  3GL0 A;  1WQL A;  3H1K E;  4H13 D;  4HJL A;  2JO6 A;  1SQX E;  3N0Q A;  2DE7 A;  2NVG A;  1SQQ E;  4NBF D;  4AIV A;  1L0L E;  1ZRT E;  2NUK A;  2BCC E;  2HMK A;  2XSO A;  1NTZ E;  4PV1 D;  1EG9 A;  3CWB E;  3DQY A;  2NWF A;  4NBD D;  1PPJ E;  1NU1 E;  3GZY A;  4NBA D;  3GB4 A;  4QDC A;  4NBE A;  2YVJ B;  3VMI A;  1NDO A;  4HM2 A;  1G8J B;  2XR8 A;  4HM7 A;  3GZX A;  2GBX A;  4HKV A;  1Z01 A;  2NUM A;  2BMQ A;  4PD4 E;  1O7G A;  2I7F A;  2XRX A;  2HMO A;  1WW9 A;  4NB8 A;  2NVE A;  4AAY B;  2D2C D;  1Z03 A;  1BE3 E;  2E76 D;  1JM1 A;  2Q3W A;  2FYU E;  1KYO E;  2ZYL A;  3GKE A;  4EMJ B;  2E4Q A;  1G8K B;  3FOU A;  1O7M A;  1BCC E;  4NBE D;  5AEU A;  3CXH E;  3VMI D;  4NBB D;  4HM1 A;  2DE5 A;  3BCC E;  3L70 E;  1O7H A;  1SQP E;  2YFL A;  3AZC A;  5HL4 A;  1ULJ A;  3VMH A;  4NB8 D;  4NBB A;  3VCP A;  4HM6 A;  5KLV E;  2BMO A;  2HMJ A;  1NYK A;  3H1J E;  3L75 E;  2B24 A;  2HML A;  3L71 E;  4P1C H;  2E4P A;  4H0L D;  4QDF A;  2YFJ A;  1O7P A;  1FQT A;  5KLI C;  1L0N E;  1UUV A;  2IBZ E;  2BMR A;  3L72 E;  5AEW A;  3GTE A;  2DE5 D;  3GCF A;  3GKQ A;  3VMG A;  1P84 E;  2FYN C;  3GL2 A;  1VCK A;  3H1L E;  2HMM A;  3EN1 A;  1EZV E;  1SQV E;  4NB9 A;  3VMH D;  4HM8 A;  4U3F E;  4QCK A;  4NBG A;  1KB9 E;  4QUQ A;  3GOB A;  1PP9 E;  4QDF B;  2QPZ A;  2DE6 A;  1VF5 D;  2YIU C;  2B1X A;  5KKZ C;  3GCE A;  2HMN A;  4QUP A;  2E75 D;  2QJK C;  4NBC A;  2E74 D;  1NTK E;  1UUW A;  4NBH D;  3EQQ A;  2XSH A;  1O7W A;  3H1H E;  4QDD A;  3VMG D;  1SJG A;  1SQB E;  2NVF A;  3TGU E;  4HM3 A;  3GTS A;  4NB9 D;  4NBG D;  4NBH A;  1Q90 C;  2JZA A;  4NBF A;  3CX5 E;  3VCA A;  4QUR A;  2GBW A;  2QJP C;  2CKF A;  5CXM A;  2ZT9 D;  2DE6 D;  1O7N A;  3C0D A;  1ULI A;  2A06 E;  2QJY C;  3H1I E;  1RFS A;  5BOK A;  3L73 E;  4HM0 A;  4P1B H;  3D89 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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