2BPRA

Nmr structure of the substrate binding domain of dnak, 25 structures
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
173
structure length
173
Chain Sequence
SIEGRVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Molecular chaperone
molecule keywords DNAK
publication title NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction.
pubmed doi rcsb
source organism Escherichia coli
total genus 21
structure length 173
sequence length 173
ec nomenclature
pdb deposition date 1998-08-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 2bprA00
4JWDA 4R5LA 1CKRA 1YUWA 3N8EA 4HYBA 4PO2A 4JWCA 4F00A 4EZZA 4FL9A 4R5GA 5E84A 4EZVA 4EZOA 7HSCA 3DPOA 2KHOA 4HY9A 4R5KA 4JWEA 4EZWA 4EZTA 4EZRA 3D2FA 3DPQA 3DQGA 4EZUA 4EZQA 1DKYA 3D2EA 4EZNA 4F01A 4EZYA 4R5IA 2QXLA 1BPRA 1Q5LA 1U00A 3DOBA 1DG4A 5TKYA 2V7YA 4JWIA 3H0XA 4JNFA 3C7NA 3QNJA 4WV5A 4EZXA 2BPRA 4B9QA 4EZPA 4EZSA 4JNEA 4JN4A 3DPPA 3C7NB 4E81A 4WV7A 1DKZA 2OP6A 4R5JA 1DKXA
chains in the Genus database with same CATH superfamily
4JWDA 4R5LA 1CKRA 1YUWA 3N8EA 4HYBA 4PO2A 3SBSA 4JWCA 4F00A 4EZZA 4FL9A 4ILIA 4R5GA 5E84A 4EZVA 4EZOA 4ILGA 7HSCA 3DPOA 2KHOA 4HY9A 4R5KA 4JWEA 4EZWA 4EZTA 4EZRA 3D2FA 3DPQA 3DQGA 4EZUA 4EZQA 1DKYA 3D2EA 4EZNA 4F01A 4EZYA 3SBTB 4R5IA 2QXLA 1BPRA 1Q5LA 1U00A 3DOBA 4ILHB 4I43A 1DG4A 5TKYA 2V7YA 4JWIA 3H0XA 4JNFA 3C7NA 3QNJA 4MQDA 4WV5A 4EZXA 2BPRA 4B9QA 4EZPA 4EZSA 4JNEA 4JN4A 3DPPA 3C7NB 4E81A 3ZEFA 4WV7A 1DKZA 2OP6A 4R5JA 1DKXA
chains in the Genus database with same CATH topology
4JWDA 4R5LA 1CKRA 1YUWA 3N8EA 4HYBA 4PO2A 3SBSA 4JWCA 4F00A 4EZZA 4FL9A 4ILIA 4R5GA 5E84A 4EZVA 4EZOA 4ILGA 7HSCA 3DPOA 2KHOA 4HY9A 4R5KA 4JWEA 4EZWA 4EZTA 4EZRA 3D2FA 3DPQA 3DQGA 4EZUA 4EZQA 1DKYA 3D2EA 4EZNA 4F01A 4EZYA 3SBTB 4R5IA 2QXLA 1BPRA 1Q5LA 1U00A 3DOBA 4ILHB 4I43A 1DG4A 5TKYA 2V7YA 4JWIA 3H0XA 4JNFA 3C7NA 3QNJA 4MQDA 4WV5A 4EZXA 2BPRA 4B9QA 4EZPA 4EZSA 4JNEA 4JN4A 3DPPA 3C7NB 4E81A 3ZEFA 4WV7A 1DKZA 2OP6A 4R5JA 1DKXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JWD A;  4R5L A;  1CKR A;  1YUW A;  3N8E A;  4HYB A;  4PO2 A;  4JWC A;  4F00 A;  4EZZ A;  4FL9 A;  4R5G A;  5E84 A;  4EZV A;  4EZO A;  7HSC A;  3DPO A;  2KHO A;  4HY9 A;  4R5K A;  4JWE A;  4EZW A;  4EZT A;  4EZR A;  3D2F A;  3DPQ A;  3DQG A;  4EZU A;  4EZQ A;  1DKY A;  3D2E A;  4EZN A;  4F01 A;  4EZY A;  4R5I A;  2QXL A;  1BPR A;  1Q5L A;  1U00 A;  3DOB A;  1DG4 A;  5TKY A;  2V7Y A;  4JWI A;  3H0X A;  4JNF A;  3C7N A;  3QNJ A;  4WV5 A;  4EZX A;  2BPR A;  4B9Q A;  4EZP A;  4EZS A;  4JNE A;  4JN4 A;  3DPP A;  3C7N B;  4E81 A;  4WV7 A;  1DKZ A;  2OP6 A;  4R5J A;  1DKX A; 
#chains in the Genus database with same CATH topology
 4JWD A;  4R5L A;  1CKR A;  1YUW A;  3N8E A;  4HYB A;  4PO2 A;  3SBS A;  4JWC A;  4F00 A;  4EZZ A;  4FL9 A;  4ILI A;  4R5G A;  5E84 A;  4EZV A;  4EZO A;  4ILG A;  7HSC A;  3DPO A;  2KHO A;  4HY9 A;  4R5K A;  4JWE A;  4EZW A;  4EZT A;  4EZR A;  3D2F A;  3DPQ A;  3DQG A;  4EZU A;  4EZQ A;  1DKY A;  3D2E A;  4EZN A;  4F01 A;  4EZY A;  3SBT B;  4R5I A;  2QXL A;  1BPR A;  1Q5L A;  1U00 A;  3DOB A;  4ILH B;  4I43 A;  1DG4 A;  5TKY A;  2V7Y A;  4JWI A;  3H0X A;  4JNF A;  3C7N A;  3QNJ A;  4MQD A;  4WV5 A;  4EZX A;  2BPR A;  4B9Q A;  4EZP A;  4EZS A;  4JNE A;  4JN4 A;  3DPP A;  3C7N B;  4E81 A;  3ZEF A;  4WV7 A;  1DKZ A;  2OP6 A;  4R5J A;  1DKX A; 
#chains in the Genus database with same CATH homology
 4JWD A;  4R5L A;  1CKR A;  1YUW A;  3N8E A;  4HYB A;  4PO2 A;  3SBS A;  4JWC A;  4F00 A;  4EZZ A;  4FL9 A;  4ILI A;  4R5G A;  5E84 A;  4EZV A;  4EZO A;  4ILG A;  7HSC A;  3DPO A;  2KHO A;  4HY9 A;  4R5K A;  4JWE A;  4EZW A;  4EZT A;  4EZR A;  3D2F A;  3DPQ A;  3DQG A;  4EZU A;  4EZQ A;  1DKY A;  3D2E A;  4EZN A;  4F01 A;  4EZY A;  3SBT B;  4R5I A;  2QXL A;  1BPR A;  1Q5L A;  1U00 A;  3DOB A;  4ILH B;  4I43 A;  1DG4 A;  5TKY A;  2V7Y A;  4JWI A;  3H0X A;  4JNF A;  3C7N A;  3QNJ A;  4MQD A;  4WV5 A;  4EZX A;  2BPR A;  4B9Q A;  4EZP A;  4EZS A;  4JNE A;  4JN4 A;  3DPP A;  3C7N B;  4E81 A;  3ZEF A;  4WV7 A;  1DKZ A;  2OP6 A;  4R5J A;  1DKX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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