2BS3C

Glu c180 -> gln variant quinol:fumarate reductase from wolinella succinogenes
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
254
structure length
254
Chain Sequence
MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVQLHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTDPNIDYKYFDYKRTH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A
publication title Experimental Support for the E-Pathway Hypothesis of Coupled Transmembrane Electron and Proton Transfer in Dihemic Quinol:Fumarate Reductase
pubmed doi rcsb
total genus 110
structure length 254
sequence length 254
chains with identical sequence F
ec nomenclature
pdb deposition date 2005-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2bs3C00
2H89C 1NEKD 5C3JC 2WDQC 3AE3C 3P4RC 2B76D 3P4SC 3AE6C 3SFDC 1ZP0D 3AE7D 4YTPD 2BS2C 1ZOYD 2BS4C 1NENC 2WS3C 3VR8D 3VR9D 1YQ4D 2WU2C 1NEKC 3AEGD 3AE4D 2B76C 3AEAD 1ZP0C 3AE7C 3AE9D 4YTPC 2BS3C 1ZOYC 4YSZD 2WDRD 3VR8C 3VR9C 1YQ4C 1YQ3D 3AEGC 2WU2D 3AE4C 3VRAD 3AEAC 3AE9C 4YSYD 2ACZD 4YSZC 2WDRC 1YQ3C 4YTND 3P4PD 2H88D 4YTMD 3P4QD 3VRAC 2WU5D 4YSYC 2ACZC 3CIRD 4YXDD 4YTNC 3P4PC 2H88C 4YTMC 3P4QC 1QLBC 2WU5C 2WP9D 2WQYD 3AECD 3AE5D 1L0VD 3CIRC 4YSXD 4YT0D 4YXDC 2WDVD 3AEED 3SFED 1KF6D 3AE1D 3ABVD 2FBWD 2WP9C 2WQYC 3AECC 3AEFD 5C2TD 3AE5C 3AEBD 1L0VC 3AE2D 4YSXC 4YT0C 1KFYD 2WDVC 3AEEC 3SFEC 1KF6C 3AE1C 3AEDD 3AE8D 3ABVC 1E7PC 2FBWC 4KX6D 3AEFC 5C2TC 3AEBC 3VRBD 3AE2C 1KFYC 2H89D 5C3JD 2WDQD 3AE3D 3P4RD 3AEDC 3AE8C 3P4SD 3AE6D 4KX6C 3SFDD 3VRBC 1NEND 2WS3D
chains in the Genus database with same CATH superfamily
4I6LA 2H89C 1NEKD 5C3JC 2WDQC 3AE3C 3P4RC 2B76D 3P4SC 3AE6C 3SFDC 1ZP0D 3AE7D 4YTPD 2BS2C 1ZOYD 2BS4C 1NENC 2WS3C 3VR8D 3VR9D 1YQ4D 2WU2C 1NEKC 3AEGD 3AE4D 2B76C 3AEAD 4FJVA 1ZP0C 3AE7C 3AE9D 4YTPC 4DDIA 2BS3C 1ZOYC 4YSZD 2WDRD 3VR8C 3VR9C 1YQ4C 4DHIB 1YQ3D 3AEGC 2WU2D 3AE4C 3VRAD 3AEAC 3AE9C 4LDTA 4YSYD 2ACZD 4DHJA 2WDRC 4YSZC 1YQ3C 4YTND 3P4PD 2H88D 4YTMD 3P4QD 3VRAC 2WU5D 4YSYC 2ACZC 3CIRD 4DDGA 4YXDD 4YTNC 3P4PC 2H88C 4YTMC 3P4QC 1QLBC 2WU5C 2WP9D 2WQYD 3AECD 3AE5D 1L0VD 3CIRC 4YSXD 4YT0D 4YXDC 2WDVD 3AEED 3SFED 1KF6D 3AE1D 3ABVD 2FBWD 2WP9C 2WQYC 3AECC 3AEFD 5C2TD 3AE5C 3AEBD 1L0VC 3AE2D 4YSXC 4YT0C 1KFYD 2WDVC 3AEEC 3SFEC 1KF6C 3AE1C 3VONA 3AEDD 3AE8D 3ABVC 1E7PC 2FBWC 4KX6D 3AEFC 5C2TC 3AEBC 4DHZA 3VRBD 3AE2C 1KFYC 2ZFYA 2H89D 5C3JD 2WDQD 3AE3D 3P4RD 1TFFA 3AEDC 3AE8C 3P4SD 3AE6D 4KX6C 3SFDD 3VRBC 1NEND 2WS3D
chains in the Genus database with same CATH topology
2H89C 1NEKD 5C3JC 2WDQC 3AE3C 3P4RC 2B76D 3P4SC 3AE6C 3SFDC 1ZP0D 3AE7D 4YTPD 2BS2C 1ZOYD 2BS4C 1NENC 2WS3C 3VR8D 3VR9D 1YQ4D 2WU2C 1NEKC 3AEGD 3AE4D 2B76C 3AEAD 1ZP0C 3AE7C 3AE9D 4YTPC 2BS3C 1ZOYC 4YSZD 2WDRD 3VR8C 3VR9C 1YQ4C 1YQ3D 3AEGC 2WU2D 3AE4C 3VRAD 3AEAC 3AE9C 4YSYD 2ACZD 4YSZC 2WDRC 1YQ3C 4YTND 3P4PD 2H88D 4YTMD 3P4QD 3VRAC 2WU5D 4YSYC 2ACZC 3CIRD 4YXDD 4YTNC 3P4PC 2H88C 4YTMC 3P4QC 1QLBC 2WU5C 2WP9D 2WQYD 3AECD 3AE5D 1L0VD 3CIRC 4YSXD 4YT0D 4YXDC 2WDVD 3AEED 3SFED 1KF6D 3AE1D 3ABVD 2FBWD 2WP9C 2WQYC 3AECC 3AEFD 5C2TD 3AE5C 3AEBD 1L0VC 3AE2D 4YSXC 4YT0C 1KFYD 2WDVC 3AEEC 3SFEC 1KF6C 3AE1C 3AEDD 3AE8D 3ABVC 1E7PC 2FBWC 4KX6D 3AEFC 5C2TC 3AEBC 3VRBD 3AE2C 1KFYC 2H89D 5C3JD 2WDQD 3AE3D 3P4RD 3AEDC 3AE8C 3P4SD 3AE6D 4KX6C 3SFDD 3VRBC 1NEND 2WS3D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H89 C;  1NEK D;  5C3J C;  2WDQ C;  3AE3 C;  3P4R C;  2B76 D;  3P4S C;  3AE6 C;  3SFD C;  1ZP0 D;  3AE7 D;  4YTP D;  2BS2 C;  1ZOY D;  2BS4 C;  1NEN C;  2WS3 C;  3VR8 D;  3VR9 D;  1YQ4 D;  2WU2 C;  1NEK C;  3AEG D;  3AE4 D;  2B76 C;  3AEA D;  1ZP0 C;  3AE7 C;  3AE9 D;  4YTP C;  2BS3 C;  1ZOY C;  4YSZ D;  2WDR D;  3VR8 C;  3VR9 C;  1YQ4 C;  1YQ3 D;  3AEG C;  2WU2 D;  3AE4 C;  3VRA D;  3AEA C;  3AE9 C;  4YSY D;  2ACZ D;  4YSZ C;  2WDR C;  1YQ3 C;  4YTN D;  3P4P D;  2H88 D;  4YTM D;  3P4Q D;  3VRA C;  2WU5 D;  4YSY C;  2ACZ C;  3CIR D;  4YXD D;  4YTN C;  3P4P C;  2H88 C;  4YTM C;  3P4Q C;  1QLB C;  2WU5 C;  2WP9 D;  2WQY D;  3AEC D;  3AE5 D;  1L0V D;  3CIR C;  4YSX D;  4YT0 D;  4YXD C;  2WDV D;  3AEE D;  3SFE D;  1KF6 D;  3AE1 D;  3ABV D;  2FBW D;  2WP9 C;  2WQY C;  3AEC C;  3AEF D;  5C2T D;  3AE5 C;  3AEB D;  1L0V C;  3AE2 D;  4YSX C;  4YT0 C;  1KFY D;  2WDV C;  3AEE C;  3SFE C;  1KF6 C;  3AE1 C;  3AED D;  3AE8 D;  3ABV C;  1E7P C;  2FBW C;  4KX6 D;  3AEF C;  5C2T C;  3AEB C;  3VRB D;  3AE2 C;  1KFY C;  2H89 D;  5C3J D;  2WDQ D;  3AE3 D;  3P4R D;  3AED C;  3AE8 C;  3P4S D;  3AE6 D;  4KX6 C;  3SFD D;  3VRB C;  1NEN D;  2WS3 D; 
#chains in the Genus database with same CATH topology
 4I6L A;  2H89 C;  1NEK D;  5C3J C;  2WDQ C;  3AE3 C;  3P4R C;  2B76 D;  3P4S C;  3AE6 C;  3SFD C;  1ZP0 D;  3AE7 D;  4YTP D;  2BS2 C;  1ZOY D;  2BS4 C;  1NEN C;  2WS3 C;  3VR8 D;  3VR9 D;  1YQ4 D;  2WU2 C;  1NEK C;  3AEG D;  3AE4 D;  2B76 C;  3AEA D;  4FJV A;  1ZP0 C;  3AE7 C;  3AE9 D;  4YTP C;  4DDI A;  2BS3 C;  1ZOY C;  4YSZ D;  2WDR D;  3VR8 C;  3VR9 C;  1YQ4 C;  4DHI B;  1YQ3 D;  3AEG C;  2WU2 D;  3AE4 C;  3VRA D;  3AEA C;  3AE9 C;  4LDT A;  4YSY D;  2ACZ D;  4DHJ A;  2WDR C;  4YSZ C;  1YQ3 C;  4YTN D;  3P4P D;  2H88 D;  4YTM D;  3P4Q D;  3VRA C;  2WU5 D;  4YSY C;  2ACZ C;  3CIR D;  4DDG A;  4YXD D;  4YTN C;  3P4P C;  2H88 C;  4YTM C;  3P4Q C;  1QLB C;  2WU5 C;  2WP9 D;  2WQY D;  3AEC D;  3AE5 D;  1L0V D;  3CIR C;  4YSX D;  4YT0 D;  4YXD C;  2WDV D;  3AEE D;  3SFE D;  1KF6 D;  3AE1 D;  3ABV D;  2FBW D;  2WP9 C;  2WQY C;  3AEC C;  3AEF D;  5C2T D;  3AE5 C;  3AEB D;  1L0V C;  3AE2 D;  4YSX C;  4YT0 C;  1KFY D;  2WDV C;  3AEE C;  3SFE C;  1KF6 C;  3AE1 C;  3VON A;  3AED D;  3AE8 D;  3ABV C;  1E7P C;  2FBW C;  4KX6 D;  3AEF C;  5C2T C;  3AEB C;  4DHZ A;  3VRB D;  3AE2 C;  1KFY C;  2ZFY A;  2H89 D;  5C3J D;  2WDQ D;  3AE3 D;  3P4R D;  1TFF A;  3AED C;  3AE8 C;  3P4S D;  3AE6 D;  4KX6 C;  3SFD D;  3VRB C;  1NEN D;  2WS3 D; 
#chains in the Genus database with same CATH homology
 2H89 C;  1NEK D;  5C3J C;  2WDQ C;  3AE3 C;  3P4R C;  2B76 D;  3P4S C;  3AE6 C;  3SFD C;  1ZP0 D;  3AE7 D;  4YTP D;  2BS2 C;  1ZOY D;  2BS4 C;  1NEN C;  2WS3 C;  3VR8 D;  3VR9 D;  1YQ4 D;  2WU2 C;  1NEK C;  3AEG D;  3AE4 D;  2B76 C;  3AEA D;  1ZP0 C;  3AE7 C;  3AE9 D;  4YTP C;  2BS3 C;  1ZOY C;  4YSZ D;  2WDR D;  3VR8 C;  3VR9 C;  1YQ4 C;  1YQ3 D;  3AEG C;  2WU2 D;  3AE4 C;  3VRA D;  3AEA C;  3AE9 C;  4YSY D;  2ACZ D;  4YSZ C;  2WDR C;  1YQ3 C;  4YTN D;  3P4P D;  2H88 D;  4YTM D;  3P4Q D;  3VRA C;  2WU5 D;  4YSY C;  2ACZ C;  3CIR D;  4YXD D;  4YTN C;  3P4P C;  2H88 C;  4YTM C;  3P4Q C;  1QLB C;  2WU5 C;  2WP9 D;  2WQY D;  3AEC D;  3AE5 D;  1L0V D;  3CIR C;  4YSX D;  4YT0 D;  4YXD C;  2WDV D;  3AEE D;  3SFE D;  1KF6 D;  3AE1 D;  3ABV D;  2FBW D;  2WP9 C;  2WQY C;  3AEC C;  3AEF D;  5C2T D;  3AE5 C;  3AEB D;  1L0V C;  3AE2 D;  4YSX C;  4YT0 C;  1KFY D;  2WDV C;  3AEE C;  3SFE C;  1KF6 C;  3AE1 C;  3AED D;  3AE8 D;  3ABV C;  1E7P C;  2FBW C;  4KX6 D;  3AEF C;  5C2T C;  3AEB C;  3VRB D;  3AE2 C;  1KFY C;  2H89 D;  5C3J D;  2WDQ D;  3AE3 D;  3P4R D;  3AED C;  3AE8 C;  3P4S D;  3AE6 D;  4KX6 C;  3SFD D;  3VRB C;  1NEN D;  2WS3 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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