2BS3C

Glu c180 -> gln variant quinol:fumarate reductase from wolinella succinogenes
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
254
structure length
254
Chain Sequence
MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVQLHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTDPNIDYKYFDYKRTH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Experimental Support for the E-Pathway Hypothesis of Coupled Transmembrane Electron and Proton Transfer in Dihemic Quinol:Fumarate Reductase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A
total genus 110
structure length 254
sequence length 254
chains with identical sequence F
ec nomenclature
pdb deposition date 2005-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2bs3C00
3P4QD 4YT0D 3VR9D 4YTPC 3AE8D 1KF6D 2WS3C 3AEBC 2WU2D 3AEFD 3AE9C 1ZOYD 3SFDC 1YQ4D 3P4RD 2WU5C 2H89D 3AEAC 1ZP0C 3AE7C 2H88C 2WP9C 2FBWD 3AEDD 3AE8C 4YSYC 2WDQC 1ZOYC 2WDVC 3AE2D 4YXDD 3AEED 3VRBC 2B76C 3AECD 3P4PD 3AE5C 1L0VC 3ABVD 2WDRC 2ACZD 4YTMD 5C3JD 1YQ3C 1KFYC 3AEGD 3AE4D 5C2TD 3P4QC 3CIRD 4KX6D 3AE3D 4YT0C 3VR9C 1KF6C 3VR8D 2WU2C 3P4SD 3SFED 3AEFC 2ACZC 4YTMC 4YTND 1YQ4C 3P4RC 2H89C 3AE1D 4YSZD 3VRAD 2FBWC 1NEKD 3AEDC 2BS2C 1E7PC 1NEND 4YTPD 3AE2C 2WS3D 3AEBD 3AE9D 4YXDC 4YSZC 3AEEC 3SFDD 3AECC 3P4PC 2WU5D 4YSXD 2BS4C 3ABVC 3AEAD 1ZP0D 3AE7D 2H88D 2WP9D 5C3JC 1NENC 4YSYD 3AEGC 3AE4C 2BS3C 2WDQD 5C2TC 3AE6D 3CIRC 4KX6C 3AE3C 2WDVD 2WQYD 4YSXC 3VR8C 3P4SC 1QLBC 3SFEC 3VRBD 2B76D 3AE5D 4YTNC 1L0VD 2WDRD 3AE1C 3AE6C 3VRAC 1YQ3D 1KFYD 2WQYC 1NEKC
chains in the Genus database with same CATH superfamily
3P4QD 4YT0D 3VR9D 4DHJA 4YTPC 3AE8D 1KF6D 2WS3C 3AEBC 2WU2D 3AEFD 3AE9C 1ZOYD 3SFDC 1YQ4D 3P4RD 2WU5C 2H89D 3AEAC 1ZP0C 3AE7C 1TFFA 2H88C 2FBWD 2WP9C 3AEDD 3AE8C 4YSYC 2WDQC 1ZOYC 2WDVC 3AE2D 4YXDD 3AEED 3VRBC 2B76C 3AECD 3P4PD 3AE5C 1L0VC 3ABVD 2WDRC 2ACZD 4YTMD 5C3JD 1YQ3C 1KFYC 3AEGD 3AE4D 5C2TD 3P4QC 3CIRD 4KX6D 3AE3D 4YT0C 4FJVA 3VR9C 1KF6C 3VR8D 2WU2C 3P4SD 3SFED 3AEFC 2ACZC 4YTMC 3VONA 4YTND 4I6LA 1YQ4C 3P4RC 2H89C 3AE1D 4YSZD 3VRAD 2FBWC 1NEKD 3AEDC 2BS2C 1E7PC 1NEND 4DHIB 4YTPD 3AE2C 2WS3D 3AEBD 3AE9D 4YXDC 4YSZC 3AEEC 3SFDD 3AECC 4DHZA 3P4PC 2ZFYA 2WU5D 4YSXD 2BS4C 3ABVC 3AEAD 1ZP0D 3AE7D 2H88D 2WP9D 5C3JC 1NENC 4YSYD 3AEGC 3AE4C 2BS3C 2WDQD 5C2TC 4LDTA 3AE6D 3CIRC 4KX6C 3AE3C 2WDVD 2WQYD 4YSXC 3VR8C 3P4SC 1QLBC 3SFEC 3VRBD 2B76D 3AE5D 4YTNC 1L0VD 2WDRD 3AE1C 4DDGA 3AE6C 3VRAC 1YQ3D 1KFYD 2WQYC 1NEKC 4DDIA
chains in the Genus database with same CATH topology
3P4QD 4YT0D 3VR9D 4YTPC 3AE8D 1KF6D 2WS3C 3AEBC 2WU2D 3AEFD 3AE9C 1ZOYD 3SFDC 1YQ4D 3P4RD 2WU5C 2H89D 3AEAC 1ZP0C 3AE7C 2H88C 2WP9C 2FBWD 3AEDD 3AE8C 4YSYC 2WDQC 1ZOYC 2WDVC 3AE2D 4YXDD 3AEED 3VRBC 2B76C 3AECD 3P4PD 3AE5C 1L0VC 3ABVD 2WDRC 2ACZD 4YTMD 5C3JD 1YQ3C 1KFYC 3AEGD 3AE4D 5C2TD 3P4QC 3CIRD 4KX6D 3AE3D 4YT0C 3VR9C 1KF6C 3VR8D 2WU2C 3P4SD 3SFED 3AEFC 2ACZC 4YTMC 4YTND 1YQ4C 3P4RC 2H89C 3AE1D 4YSZD 3VRAD 2FBWC 1NEKD 3AEDC 2BS2C 1E7PC 1NEND 4YTPD 3AE2C 2WS3D 3AEBD 3AE9D 4YXDC 4YSZC 3AEEC 3SFDD 3AECC 3P4PC 2WU5D 4YSXD 2BS4C 3ABVC 3AEAD 1ZP0D 3AE7D 2H88D 2WP9D 5C3JC 1NENC 4YSYD 3AEGC 3AE4C 2BS3C 2WDQD 5C2TC 3AE6D 3CIRC 4KX6C 3AE3C 2WDVD 2WQYD 4YSXC 3VR8C 3P4SC 1QLBC 3SFEC 3VRBD 2B76D 3AE5D 4YTNC 1L0VD 2WDRD 3AE1C 3AE6C 3VRAC 1YQ3D 1KFYD 2WQYC 1NEKC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P4Q D;  4YT0 D;  3VR9 D;  4YTP C;  3AE8 D;  1KF6 D;  2WS3 C;  3AEB C;  2WU2 D;  3AEF D;  3AE9 C;  1ZOY D;  3SFD C;  1YQ4 D;  3P4R D;  2WU5 C;  2H89 D;  3AEA C;  1ZP0 C;  3AE7 C;  2H88 C;  2WP9 C;  2FBW D;  3AED D;  3AE8 C;  4YSY C;  2WDQ C;  1ZOY C;  2WDV C;  3AE2 D;  4YXD D;  3AEE D;  3VRB C;  2B76 C;  3AEC D;  3P4P D;  3AE5 C;  1L0V C;  3ABV D;  2WDR C;  2ACZ D;  4YTM D;  5C3J D;  1YQ3 C;  1KFY C;  3AEG D;  3AE4 D;  5C2T D;  3P4Q C;  3CIR D;  4KX6 D;  3AE3 D;  4YT0 C;  3VR9 C;  1KF6 C;  3VR8 D;  2WU2 C;  3P4S D;  3SFE D;  3AEF C;  2ACZ C;  4YTM C;  4YTN D;  1YQ4 C;  3P4R C;  2H89 C;  3AE1 D;  4YSZ D;  3VRA D;  2FBW C;  1NEK D;  3AED C;  2BS2 C;  1E7P C;  1NEN D;  4YTP D;  3AE2 C;  2WS3 D;  3AEB D;  3AE9 D;  4YXD C;  4YSZ C;  3AEE C;  3SFD D;  3AEC C;  3P4P C;  2WU5 D;  4YSX D;  2BS4 C;  3ABV C;  3AEA D;  1ZP0 D;  3AE7 D;  2H88 D;  2WP9 D;  5C3J C;  1NEN C;  4YSY D;  3AEG C;  3AE4 C;  2BS3 C;  2WDQ D;  5C2T C;  3AE6 D;  3CIR C;  4KX6 C;  3AE3 C;  2WDV D;  2WQY D;  4YSX C;  3VR8 C;  3P4S C;  1QLB C;  3SFE C;  3VRB D;  2B76 D;  3AE5 D;  4YTN C;  1L0V D;  2WDR D;  3AE1 C;  3AE6 C;  3VRA C;  1YQ3 D;  1KFY D;  2WQY C;  1NEK C; 
#chains in the Genus database with same CATH topology
 3P4Q D;  4YT0 D;  3VR9 D;  4DHJ A;  4YTP C;  3AE8 D;  1KF6 D;  2WS3 C;  3AEB C;  2WU2 D;  3AEF D;  3AE9 C;  1ZOY D;  3SFD C;  1YQ4 D;  3P4R D;  2WU5 C;  2H89 D;  3AEA C;  1ZP0 C;  3AE7 C;  1TFF A;  2H88 C;  2FBW D;  2WP9 C;  3AED D;  3AE8 C;  4YSY C;  2WDQ C;  1ZOY C;  2WDV C;  3AE2 D;  4YXD D;  3AEE D;  3VRB C;  2B76 C;  3AEC D;  3P4P D;  3AE5 C;  1L0V C;  3ABV D;  2WDR C;  2ACZ D;  4YTM D;  5C3J D;  1YQ3 C;  1KFY C;  3AEG D;  3AE4 D;  5C2T D;  3P4Q C;  3CIR D;  4KX6 D;  3AE3 D;  4YT0 C;  4FJV A;  3VR9 C;  1KF6 C;  3VR8 D;  2WU2 C;  3P4S D;  3SFE D;  3AEF C;  2ACZ C;  4YTM C;  3VON A;  4YTN D;  4I6L A;  1YQ4 C;  3P4R C;  2H89 C;  3AE1 D;  4YSZ D;  3VRA D;  2FBW C;  1NEK D;  3AED C;  2BS2 C;  1E7P C;  1NEN D;  4DHI B;  4YTP D;  3AE2 C;  2WS3 D;  3AEB D;  3AE9 D;  4YXD C;  4YSZ C;  3AEE C;  3SFD D;  3AEC C;  4DHZ A;  3P4P C;  2ZFY A;  2WU5 D;  4YSX D;  2BS4 C;  3ABV C;  3AEA D;  1ZP0 D;  3AE7 D;  2H88 D;  2WP9 D;  5C3J C;  1NEN C;  4YSY D;  3AEG C;  3AE4 C;  2BS3 C;  2WDQ D;  5C2T C;  4LDT A;  3AE6 D;  3CIR C;  4KX6 C;  3AE3 C;  2WDV D;  2WQY D;  4YSX C;  3VR8 C;  3P4S C;  1QLB C;  3SFE C;  3VRB D;  2B76 D;  3AE5 D;  4YTN C;  1L0V D;  2WDR D;  3AE1 C;  4DDG A;  3AE6 C;  3VRA C;  1YQ3 D;  1KFY D;  2WQY C;  1NEK C;  4DDI A; 
#chains in the Genus database with same CATH homology
 3P4Q D;  4YT0 D;  3VR9 D;  4YTP C;  3AE8 D;  1KF6 D;  2WS3 C;  3AEB C;  2WU2 D;  3AEF D;  3AE9 C;  1ZOY D;  3SFD C;  1YQ4 D;  3P4R D;  2WU5 C;  2H89 D;  3AEA C;  1ZP0 C;  3AE7 C;  2H88 C;  2WP9 C;  2FBW D;  3AED D;  3AE8 C;  4YSY C;  2WDQ C;  1ZOY C;  2WDV C;  3AE2 D;  4YXD D;  3AEE D;  3VRB C;  2B76 C;  3AEC D;  3P4P D;  3AE5 C;  1L0V C;  3ABV D;  2WDR C;  2ACZ D;  4YTM D;  5C3J D;  1YQ3 C;  1KFY C;  3AEG D;  3AE4 D;  5C2T D;  3P4Q C;  3CIR D;  4KX6 D;  3AE3 D;  4YT0 C;  3VR9 C;  1KF6 C;  3VR8 D;  2WU2 C;  3P4S D;  3SFE D;  3AEF C;  2ACZ C;  4YTM C;  4YTN D;  1YQ4 C;  3P4R C;  2H89 C;  3AE1 D;  4YSZ D;  3VRA D;  2FBW C;  1NEK D;  3AED C;  2BS2 C;  1E7P C;  1NEN D;  4YTP D;  3AE2 C;  2WS3 D;  3AEB D;  3AE9 D;  4YXD C;  4YSZ C;  3AEE C;  3SFD D;  3AEC C;  3P4P C;  2WU5 D;  4YSX D;  2BS4 C;  3ABV C;  3AEA D;  1ZP0 D;  3AE7 D;  2H88 D;  2WP9 D;  5C3J C;  1NEN C;  4YSY D;  3AEG C;  3AE4 C;  2BS3 C;  2WDQ D;  5C2T C;  3AE6 D;  3CIR C;  4KX6 C;  3AE3 C;  2WDV D;  2WQY D;  4YSX C;  3VR8 C;  3P4S C;  1QLB C;  3SFE C;  3VRB D;  2B76 D;  3AE5 D;  4YTN C;  1L0V D;  2WDR D;  3AE1 C;  3AE6 C;  3VRA C;  1YQ3 D;  1KFY D;  2WQY C;  1NEK C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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