2BT7A

Structure of the c-terminal receptor-binding domain of avian reovirus fibre sigmac, cd crystal form
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
170
structure length
170
Chain Sequence
SHGLSFSPPLSVADGVVSLDMDPYFCSQRVSLTSYSAEAQLMQFRWMARGTNGSSDTIDMTVNAHCHGRRTDYMMSSTGNLTVTSNVVLLTFDLSDITHIPSDLARLVPSAGFQAASFPVDVSFTRDSATHAYQAYGVYSSSRVFTITFPTGGDGTANIRSLTVRTGIDT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords SIGMA C
publication title Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac
pubmed doi rcsb
source organism Avian orthoreovirus
total genus 35
structure length 170
sequence length 170
ec nomenclature
pdb deposition date 2005-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04582 Reo_sigmaC Reovirus sigma C capsid protein C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.25.20 Mainly Beta Ribbon Laminin reovirus attachment protein sigma1; domain 1 2bt7A01
2.60.90.40 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) 2bt7A02
2BSFA 1QIUA 4GU4A 2BT7A 2VRSA 1KKEA 1V1IA 4GU3A 2BT8A 2JJLA 1V1HA 3S6XA
chains in the Genus database with same CATH superfamily
1G1SA 4JYUL 2YGOA 1NFXB 2BT8A 1LMJA 1XKAL 4YT7L 1UXEA 2BOXA 1WU1B 2NPRA 2WG3C 3QH0A 3H5CB 3GISX 2W2ME 1NQLB 4C16A 1XKBA 1JV2B 4XL8A 4D0FA 4CUDA 2OYEP 4Z6AL 2Y81B 4LMFA 2P3FN 2WPKE 4X8UL 2WPLE 3FCSB 3TH3L 1KIGL 2XC5L 2UWLB 2MHPA 3GCXE 2TGFA 1ADXA 1CCFA 1V1HA 1FF7A 2P94L 1IQKL 2VRSA 4ZAEB 3TK6B 2J2UB 1TOZA 3QMOA 1LMMA 3BPSE 3N8XA 1FE2A 5I46L 3L89A 5JBCE 5JW1A 4Y7AB 2WPME 5IKQA 3QNDA 3O8EA 2PHBB 4E1GA 5IKTA 1IOXA 2P93L 2Y7XB 3N8WB 3N8YA 3P5BL 4NA9L 3LN0A 1HT8A 1G2MB 4CSYA 2XBVL 4BTUA 4JZDL 1KLOA 2VH0B 2VJ3A 1APQA 4O02B 1PGEA 3HO4A 1IQEL 6COXA 1NOBA 1SZBA 1P0SL 1IQLL 1F0RB 4ZHAB 1WHFA 4ZDGA 5K0HB 1GK5A 2WG4B 2GD4A 2Y5HL 4JZEL 5F19A 3ZPEA 3SOQA 1IQFL 2Y7ZB 2BOKL 1FFMA 1NFWB 1UXBA 1P6AA 2ADXA 3SW2A 3Q7DA 2YGQA 4CUFA 4D0EA 1DDXA 1EPHA 2K2SB 4PH9A 2KV4A 1FJSL 2J4IB 5L2ZL 1IQJL 4M11A 4XBMA 3U7UG 1HREA 4BXSA 5JVYA 1HAEA 2VVUL 4D90A 2VTWA 3N8VA 3KCGL 1EZQB 3CENL 2PR3B 1CQEA 1EPJA 4Y6DB 5KN5C 2K2TA 1EGFA 1YO8A 3ZPFA 1HT5A 3BT1A 4ISIL 2WGTA 2CJIB 2WPIE 4XL1A 1PTHA 2JJLA 2Q1JB 1HAFA 1B9WA 2OJ6A 2Y5FL 3ASIA 3IJEB 3EXWA 4YZUB 4JZFL 4MMYB 4Y71B 3BT2A 5IKRA 3TZIA 2F9BL 2J12A 1ATDA 4BXWA 1MQ5L 3LTGD 3M37L 1EAIC 2AYLA 3KQDL 1LK9A 1CVWL 5F1AA 3GCWE 1P69A 4GU3A 1TLEA 1YUFA 2MGPA 2FD6A 4RRXA 4Y7BB 1CX2A 1IQIL 1IQHL 4YT6L 2J95B 1L3YA 2WFTA 1QFKL 1LPGA 4CUEA 4XQAA 1AUTL 2I9BA 3KQEL 4ISHL 5L2YL 3NT1A 1U67A 4MMZB 2BZUA 3M36L 1LPKA 3TGFA 2EI7B 1ATBA 3ZYGA 4NGAL 1MQ6L 2G00L 4BDXA 2J34B 4XQBA 1IP0A 5JB8E 3SOVA 2XBXL 3LIWB 3TK5B 4G1MB 1QIUA 4Y79B 2P3FL 1XDTR 2XBWL 4LIYA 3NJPC 2D1JB 1F0SB 2YGPA 2H9EC 3LC3B 3NTBA 3NTGA 1ATAA 4RRYA 4BDWA 1TPGA 3PGHA 1F7EA 2WZPP 1QHVA 3KRKA 1M1XB 1IJQA 2VWLL 2P3UA 2W26B 4M10A 2BQ6A 2IUNA 2WBWA 2WPJE 2HORA 1EQGA 1XFEA 3BQ4A 2J38B 1ATEA 2BZ6L 1N1IA 3N8YB 3HPTA 2W2QE 3KK6A 2UWPB 1URKA 2J94B 3K9XA 2M74A 1H7ZA 1KACA 3L88A 1KLIL 3CA7A 2WYJB 3ZYJB 3KL6B 2Y5GL 5EGMB 2VWMK 3F0YA 4BTTA 1YUGA 4A94C 4JYVL 4ZXXL 1NZIA 3R05A 1V1IA 1EPGA 4ZXYL 5E8DA 3V64C 2OJ5A 2RHPA 4K6WA 3TBDA 1HZ8A 4O1ZA 4CW8A 1CCVA 2OYUP 1YUKB 2KL7A 5CKMA 1HX2A 1N7DA 1UZQA 3EGFA 3HS5A 2FLBL 4Z0KB 1UXAA 3EOYA 1P9JA 1CVUA 1G1QA 1PXXA 3QCWA 1C5MF 2W2OE 5JB9E 1APOA 3LC5B 3CS7L 1BF9A 2BMGA 1RFNB 4GU4A 3ENSA 1Z6CA 1LQDA 1I0UA 1W8BL 4NG9L 4OTYA 2BQ7A 4OTJA 4Y76B 5KIRA 4K6UA 2P26A 3KQBL 3LAQA 1UZKA 1IQGL 1V3XB 4K6VA 2PUQL 1K37A 1YGCL 4RS0A 1FSBA 2VVVL 5CKNA 1COUA 2IUMA 3SOBB 1ZAQA 3IITB 3OLTA 4Z0LA 2W3KB 4FM5A 5IKVA 5JVZA 4D63A 2XC0L 5FDQA 1MOXC 4AQTA 2P28B 3LTFB 3U73A 4D62A 2VWOL 2DDUA 3POYA 2Y38A 3ELAL 2P95L 1U8CB 5JBAE 3CNCA 2FLGA 1A3PA 1O5DL 1L5GB 3RR3A 3LN1A 4RRWA 2P3TA 3Q3KB 1LPZA 2P16L 4X8TL 2RNLA 1W7XL 2KNIA 1X7AL 2EI8B 2MGRA 1IOEL 4XC5A 3S6XA 2BSFA 2WSTA 1EQHA 1KSNB 4A7IA 2BZVA 1Q4GA 4LORA 2RA0L 2W86A 1HRFA 1JBUL 1G1RA 2HOXA 2QLKA 1IGZA 5MHSA 3N8WA 1HCGB 2BOUA 1DQBA 1HJ7A 3F1SB 1EMOA 3FBYA 1DIYA 3HS7A 1J9CL 5CKQA 2W2NE 4TGFA 3OLUA 2WGUA 5COXA 4BTIA 2VWNL 1FAXL 2WYGB 3EXVA 1F7MA 1IGXA 3CFWA 1OB1C 2XC4L 3FFGL 4WYJA 4X8VL 2J1KC 3DEMA 2FLRL 2EI6B 3MDLA 3F6UL 2J2JA 2WFXB 4XLWA 2W9LC 3MQEA 5L30L 4RRZA 1UZPA 4ATZA 2W3IB 2Y82B 1NFUB 1PFXL 5CISA 1IVOC 2VH6B 4K6TA 2O39A 1EPIA 2WPHE 1FAKL 3HO3A 1PRHA 2BO2A 4COXA 1K36A 2WBVA 1WHEA 4RUTA 1JL9A 3ZYIB 3HO5A 1UZJA 1EMNA 1Z6EL 3V65B 2XBYL 1EBVA 4X8SL 2B7DL 1IQNL 3C9AC 1KNBA 1DVAL 2BOHA 4ODBA 1G2LB 1G1TA 2VVCK 2I9AA 2BT7A 1IQML 2JKHL 4MMXB 2FZZL 2UWOB 3N8ZA 1NFYB 1CEJA 1NPEB 3N0IA 4ZH8B 2BQWA 3KQCL 5JBBE 3HS6A 1DX5I 2H9EL 2KB9A 1NT0A 1KKEA 2Y80B 1KLJL 2W2PE
chains in the Genus database with same CATH topology
4GU4A 4D63A 2BT8A 2VTWA 3ZPEA 4CW8A 3S6XA 2BSFA 4D62A 2BT7A 1V1HA 3ZPFA 2VRSA 2IUMA 2IUNA 1KKEA 1V1IA 4GU3A 2JJLA 1QIUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BSF A;  1QIU A;  4GU4 A;  2BT7 A;  2VRS A;  1KKE A;  1V1I A;  4GU3 A;  2BT8 A;  2JJL A;  1V1H A;  3S6X A; 
#chains in the Genus database with same CATH topology
 1G1S A;  4JYU L;  2YGO A;  1NFX B;  2BT8 A;  1LMJ A;  1XKA L;  4YT7 L;  1UXE A;  2BOX A;  1WU1 B;  2NPR A;  2WG3 C;  3QH0 A;  3H5C B;  3GIS X;  2W2M E;  1NQL B;  4C16 A;  1XKB A;  1JV2 B;  4XL8 A;  4D0F A;  4CUD A;  2OYE P;  4Z6A L;  2Y81 B;  4LMF A;  2P3F N;  2WPK E;  4X8U L;  2WPL E;  3FCS B;  3TH3 L;  1KIG L;  2XC5 L;  2UWL B;  2MHP A;  3GCX E;  2TGF A;  1ADX A;  1CCF A;  1V1H A;  1FF7 A;  2P94 L;  1IQK L;  2VRS A;  4ZAE B;  3TK6 B;  2J2U B;  1TOZ A;  3QMO A;  1LMM A;  3BPS E;  3N8X A;  1FE2 A;  5I46 L;  3L89 A;  5JBC E;  5JW1 A;  4Y7A B;  2WPM E;  5IKQ A;  3QND A;  3O8E A;  2PHB B;  4E1G A;  5IKT A;  1IOX A;  2P93 L;  2Y7X B;  3N8W B;  3N8Y A;  3P5B L;  4NA9 L;  3LN0 A;  1HT8 A;  1G2M B;  4CSY A;  2XBV L;  4BTU A;  4JZD L;  1KLO A;  2VH0 B;  2VJ3 A;  1APQ A;  4O02 B;  1PGE A;  3HO4 A;  1IQE L;  6COX A;  1NOB A;  1SZB A;  1P0S L;  1IQL L;  1F0R B;  4ZHA B;  1WHF A;  4ZDG A;  5K0H B;  1GK5 A;  2WG4 B;  2GD4 A;  2Y5H L;  4JZE L;  5F19 A;  3ZPE A;  3SOQ A;  1IQF L;  2Y7Z B;  2BOK L;  1FFM A;  1NFW B;  1UXB A;  1P6A A;  2ADX A;  3SW2 A;  3Q7D A;  2YGQ A;  4CUF A;  4D0E A;  1DDX A;  1EPH A;  2K2S B;  4PH9 A;  2KV4 A;  1FJS L;  2J4I B;  5L2Z L;  1IQJ L;  4M11 A;  4XBM A;  3U7U G;  1HRE A;  4BXS A;  5JVY A;  1HAE A;  2VVU L;  4D90 A;  2VTW A;  3N8V A;  3KCG L;  1EZQ B;  3CEN L;  2PR3 B;  1CQE A;  1EPJ A;  4Y6D B;  5KN5 C;  2K2T A;  1EGF A;  1YO8 A;  3ZPF A;  1HT5 A;  3BT1 A;  4ISI L;  2WGT A;  2CJI B;  2WPI E;  4XL1 A;  1PTH A;  2JJL A;  2Q1J B;  1HAF A;  1B9W A;  2OJ6 A;  2Y5F L;  3ASI A;  3IJE B;  3EXW A;  4YZU B;  4JZF L;  4MMY B;  4Y71 B;  3BT2 A;  5IKR A;  3TZI A;  2F9B L;  2J12 A;  1ATD A;  4BXW A;  1MQ5 L;  3LTG D;  3M37 L;  1EAI C;  2AYL A;  3KQD L;  1LK9 A;  1CVW L;  5F1A A;  3GCW E;  1P69 A;  4GU3 A;  1TLE A;  1YUF A;  2MGP A;  2FD6 A;  4RRX A;  4Y7B B;  1CX2 A;  1IQI L;  1IQH L;  4YT6 L;  2J95 B;  1L3Y A;  2WFT A;  1QFK L;  1LPG A;  4CUE A;  4XQA A;  1AUT L;  2I9B A;  3KQE L;  4ISH L;  5L2Y L;  3NT1 A;  1U67 A;  4MMZ B;  2BZU A;  3M36 L;  1LPK A;  3TGF A;  2EI7 B;  1ATB A;  3ZYG A;  4NGA L;  1MQ6 L;  2G00 L;  4BDX A;  2J34 B;  4XQB A;  1IP0 A;  5JB8 E;  3SOV A;  2XBX L;  3LIW B;  3TK5 B;  4G1M B;  1QIU A;  4Y79 B;  2P3F L;  1XDT R;  2XBW L;  4LIY A;  3NJP C;  2D1J B;  1F0S B;  2YGP A;  2H9E C;  3LC3 B;  3NTB A;  3NTG A;  1ATA A;  4RRY A;  4BDW A;  1TPG A;  3PGH A;  1F7E A;  2WZP P;  1QHV A;  3KRK A;  1M1X B;  1IJQ A;  2VWL L;  2P3U A;  2W26 B;  4M10 A;  2BQ6 A;  2IUN A;  2WBW A;  2WPJ E;  2HOR A;  1EQG A;  1XFE A;  3BQ4 A;  2J38 B;  1ATE A;  2BZ6 L;  1N1I A;  3N8Y B;  3HPT A;  2W2Q E;  3KK6 A;  2UWP B;  1URK A;  2J94 B;  3K9X A;  2M74 A;  1H7Z A;  1KAC A;  3L88 A;  1KLI L;  3CA7 A;  2WYJ B;  3ZYJ B;  3KL6 B;  2Y5G L;  5EGM B;  2VWM K;  3F0Y A;  4BTT A;  1YUG A;  4A94 C;  4JYV L;  4ZXX L;  1NZI A;  3R05 A;  1V1I A;  1EPG A;  4ZXY L;  5E8D A;  3V64 C;  2OJ5 A;  2RHP A;  4K6W A;  3TBD A;  1HZ8 A;  4O1Z A;  4CW8 A;  1CCV A;  2OYU P;  1YUK B;  2KL7 A;  5CKM A;  1HX2 A;  1N7D A;  1UZQ A;  3EGF A;  3HS5 A;  2FLB L;  4Z0K B;  1UXA A;  3EOY A;  1P9J A;  1CVU A;  1G1Q A;  1PXX A;  3QCW A;  1C5M F;  2W2O E;  5JB9 E;  1APO A;  3LC5 B;  3CS7 L;  1BF9 A;  2BMG A;  1RFN B;  4GU4 A;  3ENS A;  1Z6C A;  1LQD A;  1I0U A;  1W8B L;  4NG9 L;  4OTY A;  2BQ7 A;  4OTJ A;  4Y76 B;  5KIR A;  4K6U A;  2P26 A;  3KQB L;  3LAQ A;  1UZK A;  1IQG L;  1V3X B;  4K6V A;  2PUQ L;  1K37 A;  1YGC L;  4RS0 A;  1FSB A;  2VVV L;  5CKN A;  1COU A;  2IUM A;  3SOB B;  1ZAQ A;  3IIT B;  3OLT A;  4Z0L A;  2W3K B;  4FM5 A;  5IKV A;  5JVZ A;  4D63 A;  2XC0 L;  5FDQ A;  1MOX C;  4AQT A;  2P28 B;  3LTF B;  3U73 A;  4D62 A;  2VWO L;  2DDU A;  3POY A;  2Y38 A;  3ELA L;  2P95 L;  1U8C B;  5JBA E;  3CNC A;  2FLG A;  1A3P A;  1O5D L;  1L5G B;  3RR3 A;  3LN1 A;  4RRW A;  2P3T A;  3Q3K B;  1LPZ A;  2P16 L;  4X8T L;  2RNL A;  1W7X L;  2KNI A;  1X7A L;  2EI8 B;  2MGR A;  1IOE L;  4XC5 A;  3S6X A;  2BSF A;  2WST A;  1EQH A;  1KSN B;  4A7I A;  2BZV A;  1Q4G A;  4LOR A;  2RA0 L;  2W86 A;  1HRF A;  1JBU L;  1G1R A;  2HOX A;  2QLK A;  1IGZ A;  5MHS A;  3N8W A;  1HCG B;  2BOU A;  1DQB A;  1HJ7 A;  3F1S B;  1EMO A;  3FBY A;  1DIY A;  3HS7 A;  1J9C L;  5CKQ A;  2W2N E;  4TGF A;  3OLU A;  2WGU A;  5COX A;  4BTI A;  2VWN L;  1FAX L;  2WYG B;  3EXV A;  1F7M A;  1IGX A;  3CFW A;  1OB1 C;  2XC4 L;  3FFG L;  4WYJ A;  4X8V L;  2J1K C;  3DEM A;  2FLR L;  2EI6 B;  3MDL A;  3F6U L;  2J2J A;  2WFX B;  4XLW A;  2W9L C;  3MQE A;  5L30 L;  4RRZ A;  1UZP A;  4ATZ A;  2W3I B;  2Y82 B;  1NFU B;  1PFX L;  5CIS A;  1IVO C;  2VH6 B;  4K6T A;  2O39 A;  1EPI A;  2WPH E;  1FAK L;  3HO3 A;  1PRH A;  2BO2 A;  4COX A;  1K36 A;  2WBV A;  1WHE A;  4RUT A;  1JL9 A;  3ZYI B;  3HO5 A;  1UZJ A;  1EMN A;  1Z6E L;  3V65 B;  2XBY L;  1EBV A;  4X8S L;  2B7D L;  1IQN L;  3C9A C;  1KNB A;  1DVA L;  2BOH A;  4ODB A;  1G2L B;  1G1T A;  2VVC K;  2I9A A;  2BT7 A;  1IQM L;  2JKH L;  4MMX B;  2FZZ L;  2UWO B;  3N8Z A;  1NFY B;  1CEJ A;  1NPE B;  3N0I A;  4ZH8 B;  2BQW A;  3KQC L;  5JBB E;  3HS6 A;  1DX5 I;  2H9E L;  2KB9 A;  1NT0 A;  1KKE A;  2Y80 B;  1KLJ L;  2W2P E; 
#chains in the Genus database with same CATH homology
 4GU4 A;  4D63 A;  2BT8 A;  2VTW A;  3ZPE A;  4CW8 A;  3S6X A;  2BSF A;  4D62 A;  2BT7 A;  1V1H A;  3ZPF A;  2VRS A;  2IUM A;  2IUN A;  1KKE A;  1V1I A;  4GU3 A;  2JJL A;  1QIU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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