2BURA

Crystal structure of wild-type protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 in complex with 4-hydroxybenzoate
Total Genus 42
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
202
structure length
202
Chain Sequence
ELKETPSQTGGPYVHIGLLPKQANIEVFEHNLDNNLVQDNTQGQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPGRKGSTQAPHISLIIFARGINIGLHTRVYFDDEAEANAKDPVLNSIEWATRRQTLVAKREERDGEVVYRFDIRIQGENETVFFDI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
publication title Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase
pubmed doi rcsb
source organism Acinetobacter calcoaceticus
total genus 42
structure length 202
sequence length 202
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2005-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 2burA00
2BUWA 3PCEA 4WHSA 2BUYA 3I4YA 2BUWB 1EO2A 1S9AA 2BUYB 2BUUA 4WHOA 2BUMA 1EO2B 3HJQA 2BUUB 2BV0A 2BUZA 4WHOB 3LMXM 3LMXA 3PCAM 3HKPA 1YKKA 1DLQA 2XSUA 3HJ8A 3PCAA 4WHQA 3PCGM 3HHYA 3O6JA 2BOYA 3O5UA 1YKKB 2BURB 3PCGA 3PCHM 4WHQB 3MI5M 3PCHA 3MI5A 4WHRA 3MI1M 3PCNM 3TH1A 3I51A 3MI1A 3PCNA 1DLMA 4WHRB 3I4VA 1EOBA 1EO9A 1EOAA 3PCIM 1EOBB 1EO9B 1EOAB 3PCIA 3MV6M 3MV6A 3T63M 2BURA 3PCMA 1YKPA 3T63A 1YKPB 2AZQA 2XSVA 3PCLM 1YKLB 3PCLA 3PCJM 3PCJA 3PCKM 3PCKA 3PCFM 1TMXA 4WHPB 3PCFA 4WHSD 1YKMB 4WHRF 2BUXA 3PCMM 1DMHA 2BUVA 3HGIA 3HHXA 1YKOA 2BUXB 4WHOD 2BUVB 1YKOB 3HJSA 3PCCM 1YKLA 3MFLM 1EOCA 4WHSB 3PCCA 3MFLA 1YKNA 3MV4M 2PCDM 3PCBM 1EOCB 3MV4A 2BUTA 2PCDA 3T67M 1YKNB 3PCBA 4ILTA 3N9TA 3T67A 4WHPD 2BUQA 2BUMB 3LKTM 2BUTB 3PCDM 2BV0B 2BUZB 1YKMA 3LKTA 2BUQB 3O6RA 3PCDA 2XSRA 3O32A 4WHPA 5TD3A 3LXVM 4ILVA 3LXVA 3PCEM 1DLTA
chains in the Genus database with same CATH superfamily
2BUWA 3PCEA 4WHSA 2BUYA 3I4YA 2BUWB 1EO2A 1S9AA 2BUYB 2BUUA 4WHOA 2BUMA 1EO2B 3HJQA 2BUUB 2BV0A 2BUZA 4WHOB 3LMXM 3LMXA 3PCAM 3HKPA 1YKKA 1DLQA 2XSUA 3HJ8A 3PCAA 4WHQA 3PCGM 3HHYA 3O6JA 2BOYA 3O5UA 1YKKB 2BURB 3PCGA 3PCHM 4WHQB 3MI5M 3PCHA 3MI5A 4WHRA 3MI1M 3PCNM 3TH1A 3I51A 3MI1A 3PCNA 1DLMA 4WHRB 3I4VA 1EOBA 1EO9A 1EOAA 3PCIM 1EOBB 1EO9B 1EOAB 3PCIA 3MV6M 3MV6A 3T63M 2BURA 3PCMA 1YKPA 3T63A 1YKPB 2AZQA 2XSVA 3PCLM 1YKLB 3PCLA 3PCJM 3PCJA 3PCKM 3PCKA 3PCFM 1TMXA 4WHPB 3PCFA 4WHSD 1YKMB 4WHRF 2BUXA 3PCMM 1DMHA 2BUVA 3HGIA 3HHXA 1YKOA 2BUXB 4WHOD 2BUVB 1YKOB 3HJSA 3PCCM 1YKLA 3MFLM 1EOCA 4WHSB 3PCCA 3MFLA 1YKNA 3MV4M 2PCDM 3PCBM 1EOCB 3MV4A 2BUTA 2PCDA 3T67M 1YKNB 3PCBA 4ILTA 3N9TA 3T67A 4WHPD 2BUQA 2BUMB 3LKTM 2BUTB 3PCDM 2BV0B 2BUZB 1YKMA 3LKTA 2BUQB 3O6RA 3PCDA 2XSRA 3O32A 4WHPA 5TD3A 3LXVM 4ILVA 3LXVA 3PCEM 1DLTA
chains in the Genus database with same CATH topology
2BUWA 3PCEA 4WHSA 2BUYA 3I4YA 2BUWB 1EO2A 1S9AA 2BUYB 2BUUA 4WHOA 2BUMA 1EO2B 3HJQA 2BUUB 2BV0A 2BUZA 4WHOB 3LMXM 3LMXA 3PCAM 3HKPA 1YKKA 1DLQA 2XSUA 3HJ8A 3PCAA 4WHQA 3PCGM 3HHYA 3O6JA 2BOYA 3O5UA 1YKKB 2BURB 3PCGA 3PCHM 4WHQB 3MI5M 3PCHA 3MI5A 4WHRA 3MI1M 3PCNM 3TH1A 3I51A 3MI1A 3PCNA 1DLMA 4WHRB 3I4VA 1EOBA 1EO9A 1EOAA 3PCIM 1EOBB 1EO9B 1EOAB 3PCIA 3MV6M 3MV6A 3T63M 2BURA 3PCMA 1YKPA 3T63A 1YKPB 2AZQA 2XSVA 3PCLM 1YKLB 3PCLA 3PCJM 3PCJA 3PCKM 3PCKA 3PCFM 1TMXA 4WHPB 3PCFA 4WHSD 1YKMB 4WHRF 2BUXA 3PCMM 1DMHA 2BUVA 3HGIA 3HHXA 1YKOA 2BUXB 4WHOD 2BUVB 1YKOB 3HJSA 3PCCM 1YKLA 3MFLM 1EOCA 4WHSB 3PCCA 3MFLA 1YKNA 3MV4M 2PCDM 3PCBM 1EOCB 3MV4A 2BUTA 2PCDA 3T67M 1YKNB 3PCBA 4ILTA 3N9TA 3T67A 4WHPD 2BUQA 2BUMB 3LKTM 2BUTB 3PCDM 2BV0B 2BUZB 1YKMA 3LKTA 2BUQB 3O6RA 3PCDA 2XSRA 3O32A 4WHPA 5TD3A 3LXVM 4ILVA 3LXVA 3PCEM 1DLTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUW A;  3PCE A;  4WHS A;  2BUY A;  3I4Y A;  2BUW B;  1EO2 A;  1S9A A;  2BUY B;  2BUU A;  4WHO A;  2BUM A;  1EO2 B;  3HJQ A;  2BUU B;  2BV0 A;  2BUZ A;  4WHO B;  3LMX M;  3LMX A;  3PCA M;  3HKP A;  1YKK A;  1DLQ A;  2XSU A;  3HJ8 A;  3PCA A;  4WHQ A;  3PCG M;  3HHY A;  3O6J A;  2BOY A;  3O5U A;  1YKK B;  2BUR B;  3PCG A;  3PCH M;  4WHQ B;  3MI5 M;  3PCH A;  3MI5 A;  4WHR A;  3MI1 M;  3PCN M;  3TH1 A;  3I51 A;  3MI1 A;  3PCN A;  1DLM A;  4WHR B;  3I4V A;  1EOB A;  1EO9 A;  1EOA A;  3PCI M;  1EOB B;  1EO9 B;  1EOA B;  3PCI A;  3MV6 M;  3MV6 A;  3T63 M;  2BUR A;  3PCM A;  1YKP A;  3T63 A;  1YKP B;  2AZQ A;  2XSV A;  3PCL M;  1YKL B;  3PCL A;  3PCJ M;  3PCJ A;  3PCK M;  3PCK A;  3PCF M;  1TMX A;  4WHP B;  3PCF A;  4WHS D;  1YKM B;  4WHR F;  2BUX A;  3PCM M;  1DMH A;  2BUV A;  3HGI A;  3HHX A;  1YKO A;  2BUX B;  4WHO D;  2BUV B;  1YKO B;  3HJS A;  3PCC M;  1YKL A;  3MFL M;  1EOC A;  4WHS B;  3PCC A;  3MFL A;  1YKN A;  3MV4 M;  2PCD M;  3PCB M;  1EOC B;  3MV4 A;  2BUT A;  2PCD A;  3T67 M;  1YKN B;  3PCB A;  4ILT A;  3N9T A;  3T67 A;  4WHP D;  2BUQ A;  2BUM B;  3LKT M;  2BUT B;  3PCD M;  2BV0 B;  2BUZ B;  1YKM A;  3LKT A;  2BUQ B;  3O6R A;  3PCD A;  2XSR A;  3O32 A;  4WHP A;  5TD3 A;  3LXV M;  4ILV A;  3LXV A;  3PCE M;  1DLT A; 
#chains in the Genus database with same CATH topology
 2BUW A;  3PCE A;  4WHS A;  2BUY A;  3I4Y A;  2BUW B;  1EO2 A;  1S9A A;  2BUY B;  2BUU A;  4WHO A;  2BUM A;  1EO2 B;  3HJQ A;  2BUU B;  2BV0 A;  2BUZ A;  4WHO B;  3LMX M;  3LMX A;  3PCA M;  3HKP A;  1YKK A;  1DLQ A;  2XSU A;  3HJ8 A;  3PCA A;  4WHQ A;  3PCG M;  3HHY A;  3O6J A;  2BOY A;  3O5U A;  1YKK B;  2BUR B;  3PCG A;  3PCH M;  4WHQ B;  3MI5 M;  3PCH A;  3MI5 A;  4WHR A;  3MI1 M;  3PCN M;  3TH1 A;  3I51 A;  3MI1 A;  3PCN A;  1DLM A;  4WHR B;  3I4V A;  1EOB A;  1EO9 A;  1EOA A;  3PCI M;  1EOB B;  1EO9 B;  1EOA B;  3PCI A;  3MV6 M;  3MV6 A;  3T63 M;  2BUR A;  3PCM A;  1YKP A;  3T63 A;  1YKP B;  2AZQ A;  2XSV A;  3PCL M;  1YKL B;  3PCL A;  3PCJ M;  3PCJ A;  3PCK M;  3PCK A;  3PCF M;  1TMX A;  4WHP B;  3PCF A;  4WHS D;  1YKM B;  4WHR F;  2BUX A;  3PCM M;  1DMH A;  2BUV A;  3HGI A;  3HHX A;  1YKO A;  2BUX B;  4WHO D;  2BUV B;  1YKO B;  3HJS A;  3PCC M;  1YKL A;  3MFL M;  1EOC A;  4WHS B;  3PCC A;  3MFL A;  1YKN A;  3MV4 M;  2PCD M;  3PCB M;  1EOC B;  3MV4 A;  2BUT A;  2PCD A;  3T67 M;  1YKN B;  3PCB A;  4ILT A;  3N9T A;  3T67 A;  4WHP D;  2BUQ A;  2BUM B;  3LKT M;  2BUT B;  3PCD M;  2BV0 B;  2BUZ B;  1YKM A;  3LKT A;  2BUQ B;  3O6R A;  3PCD A;  2XSR A;  3O32 A;  4WHP A;  5TD3 A;  3LXV M;  4ILV A;  3LXV A;  3PCE M;  1DLT A; 
#chains in the Genus database with same CATH homology
 2BUW A;  3PCE A;  4WHS A;  2BUY A;  3I4Y A;  2BUW B;  1EO2 A;  1S9A A;  2BUY B;  2BUU A;  4WHO A;  2BUM A;  1EO2 B;  3HJQ A;  2BUU B;  2BV0 A;  2BUZ A;  4WHO B;  3LMX M;  3LMX A;  3PCA M;  3HKP A;  1YKK A;  1DLQ A;  2XSU A;  3HJ8 A;  3PCA A;  4WHQ A;  3PCG M;  3HHY A;  3O6J A;  2BOY A;  3O5U A;  1YKK B;  2BUR B;  3PCG A;  3PCH M;  4WHQ B;  3MI5 M;  3PCH A;  3MI5 A;  4WHR A;  3MI1 M;  3PCN M;  3TH1 A;  3I51 A;  3MI1 A;  3PCN A;  1DLM A;  4WHR B;  3I4V A;  1EOB A;  1EO9 A;  1EOA A;  3PCI M;  1EOB B;  1EO9 B;  1EOA B;  3PCI A;  3MV6 M;  3MV6 A;  3T63 M;  2BUR A;  3PCM A;  1YKP A;  3T63 A;  1YKP B;  2AZQ A;  2XSV A;  3PCL M;  1YKL B;  3PCL A;  3PCJ M;  3PCJ A;  3PCK M;  3PCK A;  3PCF M;  1TMX A;  4WHP B;  3PCF A;  4WHS D;  1YKM B;  4WHR F;  2BUX A;  3PCM M;  1DMH A;  2BUV A;  3HGI A;  3HHX A;  1YKO A;  2BUX B;  4WHO D;  2BUV B;  1YKO B;  3HJS A;  3PCC M;  1YKL A;  3MFL M;  1EOC A;  4WHS B;  3PCC A;  3MFL A;  1YKN A;  3MV4 M;  2PCD M;  3PCB M;  1EOC B;  3MV4 A;  2BUT A;  2PCD A;  3T67 M;  1YKN B;  3PCB A;  4ILT A;  3N9T A;  3T67 A;  4WHP D;  2BUQ A;  2BUM B;  3LKT M;  2BUT B;  3PCD M;  2BV0 B;  2BUZ B;  1YKM A;  3LKT A;  2BUQ B;  3O6R A;  3PCD A;  2XSR A;  3O32 A;  4WHP A;  5TD3 A;  3LXV M;  4ILV A;  3LXV A;  3PCE M;  1DLT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...