2BURB

Crystal structure of wild-type protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 in complex with 4-hydroxybenzoate
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
238
structure length
238
Chain Sequence
IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
publication title Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase
pubmed doi rcsb
source organism Acinetobacter calcoaceticus
total genus 57
structure length 238
sequence length 238
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2005-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00775 Dioxygenase_C Dioxygenase
B PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 2burB00
1S9AA 1YKNA 5TD3A 3LMXA 2BUWB 3T67M 2BUVB 3PCHA 3O5UA 2BV0B 1EOBB 2BUTB 3PCAM 3MV6A 2BUWA 3PCNA 2BUVA 2XSUA 2BV0A 3O6RA 3PCLA 2PCDA 3O6JA 2BUMB 3PCDA 1EO2B 3T63A 4WHQA 3PCJM 3MFLA 1EOAA 1EO9A 3MI5A 3PCEM 3LXVA 2BUMA 1EO2A 3PCFA 4WHPD 4WHOA 3MI1M 2BUYA 3HHYA 3PCCM 1YKMA 3HJQA 2XSRA 3PCIA 3LMXM 3MV4A 3HGIA 3PCBA 4WHPB 3LKTA 3PCHM 4WHOD 4WHQB 3PCGA 1EOAB 1EO9B 4ILTA 3MV6M 4WHRA 4WHPA 3PCNM 1YKKB 3PCMA 3PCLM 4WHOB 2PCDM 1YKLA 2BUYB 1YKMB 3I51A 2BUQA 1YKKA 3HKPA 3PCDM 1YKPA 2AZQA 1DLMA 3T63M 1DLQA 2BOYA 3MFLM 3PCKA 3MI5M 1DMHA 3LXVM 3HHXA 4WHSD 3TH1A 3PCFM 4WHRB 3T67A 4ILVA 1YKLB 3PCAA 3PCIM 3HJSA 2BUQB 3MV4M 2BUXB 3PCBM 3HJ8A 1YKOA 1YKPB 1EOCA 3LKTM 3I4YA 2BUUA 3PCGM 4WHSA 1DLTA 2BURB 2BUXA 4WHRF 3PCMM 2BURA 3PCJA 1EOBA 2BUTA 2BUZB 3PCEA 2XSVA 3O32A 1YKNB 1YKOB 3N9TA 3PCKM 1EOCB 2BUZA 1TMXA 3MI1A 3I4VA 3PCCA 2BUUB 4WHSB
chains in the Genus database with same CATH superfamily
1S9AA 1YKNA 5TD3A 3LMXA 2BUWB 3T67M 2BUVB 3PCHA 3O5UA 2BV0B 1EOBB 2BUTB 3PCAM 3MV6A 2BUWA 3PCNA 2BUVA 2XSUA 2BV0A 3O6RA 3PCLA 2PCDA 3O6JA 2BUMB 3PCDA 1EO2B 3T63A 4WHQA 3PCJM 3MFLA 1EOAA 1EO9A 3MI5A 3PCEM 3LXVA 2BUMA 1EO2A 3PCFA 4WHPD 4WHOA 3MI1M 2BUYA 3HHYA 3PCCM 1YKMA 3HJQA 2XSRA 3PCIA 3LMXM 3MV4A 3HGIA 3PCBA 4WHPB 3LKTA 3PCHM 4WHOD 4WHQB 3PCGA 1EOAB 1EO9B 4ILTA 3MV6M 4WHRA 4WHPA 3PCNM 1YKKB 3PCMA 3PCLM 4WHOB 2PCDM 1YKLA 2BUYB 1YKMB 3I51A 2BUQA 1YKKA 3HKPA 3PCDM 1YKPA 2AZQA 1DLMA 3T63M 1DLQA 2BOYA 3MFLM 3PCKA 3MI5M 1DMHA 3LXVM 3HHXA 4WHSD 3TH1A 3PCFM 4WHRB 3T67A 4ILVA 1YKLB 3PCAA 3PCIM 3HJSA 2BUQB 3MV4M 2BUXB 3PCBM 3HJ8A 1YKOA 1YKPB 1EOCA 3LKTM 3I4YA 2BUUA 3PCGM 4WHSA 1DLTA 2BURB 2BUXA 4WHRF 3PCMM 2BURA 3PCJA 1EOBA 2BUTA 2BUZB 3PCEA 2XSVA 3O32A 1YKNB 1YKOB 3N9TA 3PCKM 1EOCB 2BUZA 1TMXA 3MI1A 3I4VA 3PCCA 2BUUB 4WHSB
chains in the Genus database with same CATH topology
1S9AA 1YKNA 5TD3A 3LMXA 2BUWB 3T67M 2BUVB 3PCHA 3O5UA 2BV0B 1EOBB 2BUTB 3PCAM 3MV6A 2BUWA 3PCNA 2BUVA 2XSUA 2BV0A 3O6RA 3PCLA 2PCDA 3O6JA 2BUMB 3PCDA 1EO2B 3T63A 4WHQA 3PCJM 3MFLA 1EOAA 1EO9A 3MI5A 3PCEM 3LXVA 2BUMA 1EO2A 3PCFA 4WHPD 4WHOA 3MI1M 2BUYA 3HHYA 3PCCM 1YKMA 3HJQA 2XSRA 3PCIA 3LMXM 3MV4A 3HGIA 3PCBA 4WHPB 3LKTA 3PCHM 4WHOD 4WHQB 3PCGA 1EOAB 1EO9B 4ILTA 3MV6M 4WHRA 4WHPA 3PCNM 1YKKB 3PCMA 3PCLM 4WHOB 2PCDM 1YKLA 2BUYB 1YKMB 3I51A 2BUQA 1YKKA 3HKPA 3PCDM 1YKPA 2AZQA 1DLMA 3T63M 1DLQA 2BOYA 3MFLM 3PCKA 3MI5M 1DMHA 3LXVM 3HHXA 4WHSD 3TH1A 3PCFM 4WHRB 3T67A 4ILVA 1YKLB 3PCAA 3PCIM 3HJSA 2BUQB 3MV4M 2BUXB 3PCBM 3HJ8A 1YKOA 1YKPB 1EOCA 3LKTM 3I4YA 2BUUA 3PCGM 4WHSA 1DLTA 2BURB 2BUXA 4WHRF 3PCMM 2BURA 3PCJA 1EOBA 2BUTA 2BUZB 3PCEA 2XSVA 3O32A 1YKNB 1YKOB 3N9TA 3PCKM 1EOCB 2BUZA 1TMXA 3MI1A 3I4VA 3PCCA 2BUUB 4WHSB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S9A A;  1YKN A;  5TD3 A;  3LMX A;  2BUW B;  3T67 M;  2BUV B;  3PCH A;  3O5U A;  2BV0 B;  1EOB B;  2BUT B;  3PCA M;  3MV6 A;  2BUW A;  3PCN A;  2BUV A;  2XSU A;  2BV0 A;  3O6R A;  3PCL A;  2PCD A;  3O6J A;  2BUM B;  3PCD A;  1EO2 B;  3T63 A;  4WHQ A;  3PCJ M;  3MFL A;  1EOA A;  1EO9 A;  3MI5 A;  3PCE M;  3LXV A;  2BUM A;  1EO2 A;  3PCF A;  4WHP D;  4WHO A;  3MI1 M;  2BUY A;  3HHY A;  3PCC M;  1YKM A;  3HJQ A;  2XSR A;  3PCI A;  3LMX M;  3MV4 A;  3HGI A;  3PCB A;  4WHP B;  3LKT A;  3PCH M;  4WHO D;  4WHQ B;  3PCG A;  1EOA B;  1EO9 B;  4ILT A;  3MV6 M;  4WHR A;  4WHP A;  3PCN M;  1YKK B;  3PCM A;  3PCL M;  4WHO B;  2PCD M;  1YKL A;  2BUY B;  1YKM B;  3I51 A;  2BUQ A;  1YKK A;  3HKP A;  3PCD M;  1YKP A;  2AZQ A;  1DLM A;  3T63 M;  1DLQ A;  2BOY A;  3MFL M;  3PCK A;  3MI5 M;  1DMH A;  3LXV M;  3HHX A;  4WHS D;  3TH1 A;  3PCF M;  4WHR B;  3T67 A;  4ILV A;  1YKL B;  3PCA A;  3PCI M;  3HJS A;  2BUQ B;  3MV4 M;  2BUX B;  3PCB M;  3HJ8 A;  1YKO A;  1YKP B;  1EOC A;  3LKT M;  3I4Y A;  2BUU A;  3PCG M;  4WHS A;  1DLT A;  2BUR B;  2BUX A;  4WHR F;  3PCM M;  2BUR A;  3PCJ A;  1EOB A;  2BUT A;  2BUZ B;  3PCE A;  2XSV A;  3O32 A;  1YKN B;  1YKO B;  3N9T A;  3PCK M;  1EOC B;  2BUZ A;  1TMX A;  3MI1 A;  3I4V A;  3PCC A;  2BUU B;  4WHS B; 
#chains in the Genus database with same CATH topology
 1S9A A;  1YKN A;  5TD3 A;  3LMX A;  2BUW B;  3T67 M;  2BUV B;  3PCH A;  3O5U A;  2BV0 B;  1EOB B;  2BUT B;  3PCA M;  3MV6 A;  2BUW A;  3PCN A;  2BUV A;  2XSU A;  2BV0 A;  3O6R A;  3PCL A;  2PCD A;  3O6J A;  2BUM B;  3PCD A;  1EO2 B;  3T63 A;  4WHQ A;  3PCJ M;  3MFL A;  1EOA A;  1EO9 A;  3MI5 A;  3PCE M;  3LXV A;  2BUM A;  1EO2 A;  3PCF A;  4WHP D;  4WHO A;  3MI1 M;  2BUY A;  3HHY A;  3PCC M;  1YKM A;  3HJQ A;  2XSR A;  3PCI A;  3LMX M;  3MV4 A;  3HGI A;  3PCB A;  4WHP B;  3LKT A;  3PCH M;  4WHO D;  4WHQ B;  3PCG A;  1EOA B;  1EO9 B;  4ILT A;  3MV6 M;  4WHR A;  4WHP A;  3PCN M;  1YKK B;  3PCM A;  3PCL M;  4WHO B;  2PCD M;  1YKL A;  2BUY B;  1YKM B;  3I51 A;  2BUQ A;  1YKK A;  3HKP A;  3PCD M;  1YKP A;  2AZQ A;  1DLM A;  3T63 M;  1DLQ A;  2BOY A;  3MFL M;  3PCK A;  3MI5 M;  1DMH A;  3LXV M;  3HHX A;  4WHS D;  3TH1 A;  3PCF M;  4WHR B;  3T67 A;  4ILV A;  1YKL B;  3PCA A;  3PCI M;  3HJS A;  2BUQ B;  3MV4 M;  2BUX B;  3PCB M;  3HJ8 A;  1YKO A;  1YKP B;  1EOC A;  3LKT M;  3I4Y A;  2BUU A;  3PCG M;  4WHS A;  1DLT A;  2BUR B;  2BUX A;  4WHR F;  3PCM M;  2BUR A;  3PCJ A;  1EOB A;  2BUT A;  2BUZ B;  3PCE A;  2XSV A;  3O32 A;  1YKN B;  1YKO B;  3N9T A;  3PCK M;  1EOC B;  2BUZ A;  1TMX A;  3MI1 A;  3I4V A;  3PCC A;  2BUU B;  4WHS B; 
#chains in the Genus database with same CATH homology
 1S9A A;  1YKN A;  5TD3 A;  3LMX A;  2BUW B;  3T67 M;  2BUV B;  3PCH A;  3O5U A;  2BV0 B;  1EOB B;  2BUT B;  3PCA M;  3MV6 A;  2BUW A;  3PCN A;  2BUV A;  2XSU A;  2BV0 A;  3O6R A;  3PCL A;  2PCD A;  3O6J A;  2BUM B;  3PCD A;  1EO2 B;  3T63 A;  4WHQ A;  3PCJ M;  3MFL A;  1EOA A;  1EO9 A;  3MI5 A;  3PCE M;  3LXV A;  2BUM A;  1EO2 A;  3PCF A;  4WHP D;  4WHO A;  3MI1 M;  2BUY A;  3HHY A;  3PCC M;  1YKM A;  3HJQ A;  2XSR A;  3PCI A;  3LMX M;  3MV4 A;  3HGI A;  3PCB A;  4WHP B;  3LKT A;  3PCH M;  4WHO D;  4WHQ B;  3PCG A;  1EOA B;  1EO9 B;  4ILT A;  3MV6 M;  4WHR A;  4WHP A;  3PCN M;  1YKK B;  3PCM A;  3PCL M;  4WHO B;  2PCD M;  1YKL A;  2BUY B;  1YKM B;  3I51 A;  2BUQ A;  1YKK A;  3HKP A;  3PCD M;  1YKP A;  2AZQ A;  1DLM A;  3T63 M;  1DLQ A;  2BOY A;  3MFL M;  3PCK A;  3MI5 M;  1DMH A;  3LXV M;  3HHX A;  4WHS D;  3TH1 A;  3PCF M;  4WHR B;  3T67 A;  4ILV A;  1YKL B;  3PCA A;  3PCI M;  3HJS A;  2BUQ B;  3MV4 M;  2BUX B;  3PCB M;  3HJ8 A;  1YKO A;  1YKP B;  1EOC A;  3LKT M;  3I4Y A;  2BUU A;  3PCG M;  4WHS A;  1DLT A;  2BUR B;  2BUX A;  4WHR F;  3PCM M;  2BUR A;  3PCJ A;  1EOB A;  2BUT A;  2BUZ B;  3PCE A;  2XSV A;  3O32 A;  1YKN B;  1YKO B;  3N9T A;  3PCK M;  1EOC B;  2BUZ A;  1TMX A;  3MI1 A;  3I4V A;  3PCC A;  2BUU B;  4WHS B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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