2BUUB

Crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r457s in complex with 4-nitrocatechol
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
238
structure length
238
Chain Sequence
IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWSPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
publication title Crystallographic Studies of Intradiol Dioxygenases.
rcsb
source organism Acinetobacter calcoaceticus
total genus 54
structure length 238
sequence length 238
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2005-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00775 Dioxygenase_C Dioxygenase
B PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 2buuB00
2BUXA 3I51A 1TMXA 2BUXB 3MI5A 3PCGM 3LKTA 1YKLA 1YKLB 3PCFA 2BUQA 2BUUB 2BUQB 3HJSA 3N9TA 3T63M 2BUYA 3PCKM 2BUYB 3MFLA 4WHSA 4WHSB 3PCBA 1EO2A 3PCAA 1EO2B 3O6RA 3PCJA 1EOBA 3HJ8A 1EOBB 3HKPA 1DLTA 3PCGA 3HJQA 2BUMA 1YKNA 1YKNB 3PCLM 2XSRA 4WHQB 1DMHA 3PCKA 1DLQA 2BURA 2BURB 3HHXA 3PCMM 4WHRF 2BUTA 2PCDA 3PCHA 4WHSD 3LXVM 2XSVA 3MV6M 3T67M 3PCNM 3MV4A 3O5UA 3PCCA 3O6JA 1EOAA 4WHRA 4WHRB 2BUMB 2BV0A 2BV0B 3LMXM 4ILVA 3T63A 3LXVA 3T67A 2BOYA 4WHOA 3PCDM 2BUTB 3PCIM 3HHYA 1YKKA 1YKKB 4WHPD 3I4VA 5TD3A 3MFLM 4WHPA 4WHPB 3PCBM 3PCAM 3PCLA 3LMXA 3MI1M 2BUVA 2BUVB 3PCEM 1EOAB 3PCMA 2BUWA 1EOCA 1EOCB 3PCDA 3PCIA 4ILTA 2AZQA 2BUZA 1DLMA 2BUZB 2BUUA 1YKMA 1YKMB 4WHOD 3MV6A 1YKPA 1YKPB 1EO9A 1EO9B 3HGIA 3PCNA 4WHOB 3MI5M 1S9AA 3LKTM 3MI1A 2PCDM 3PCEA 3PCFM 3PCHM 3TH1A 3I4YA 3PCJM 3O32A 3MV4M 4WHQA 1YKOA 2XSUA 1YKOB 3PCCM 2BUWB
chains in the Genus database with same CATH superfamily
2BUXA 3I51A 1TMXA 2BUXB 3MI5A 3PCGM 3LKTA 1YKLA 1YKLB 3PCFA 2BUQA 2BUUB 2BUQB 3HJSA 3N9TA 3T63M 2BUYA 3PCKM 2BUYB 3MFLA 4WHSA 4WHSB 3PCBA 1EO2A 3PCAA 1EO2B 3O6RA 3PCJA 1EOBA 3HJ8A 1EOBB 3HKPA 1DLTA 3PCGA 3HJQA 2BUMA 1YKNA 1YKNB 3PCLM 2XSRA 4WHQB 1DMHA 3PCKA 1DLQA 2BURA 2BURB 3HHXA 3PCMM 4WHRF 2BUTA 2PCDA 3PCHA 4WHSD 3LXVM 2XSVA 3MV6M 3T67M 3PCNM 3MV4A 3O5UA 3PCCA 3O6JA 1EOAA 4WHRA 4WHRB 2BUMB 2BV0A 2BV0B 3LMXM 4ILVA 3T63A 3LXVA 3T67A 2BOYA 4WHOA 3PCDM 2BUTB 3PCIM 3HHYA 1YKKA 1YKKB 4WHPD 3I4VA 5TD3A 3MFLM 4WHPA 4WHPB 3PCBM 3PCAM 3PCLA 3LMXA 3MI1M 2BUVA 2BUVB 3PCEM 1EOAB 3PCMA 2BUWA 1EOCA 1EOCB 3PCDA 3PCIA 4ILTA 2AZQA 2BUZA 1DLMA 2BUZB 2BUUA 1YKMA 1YKMB 4WHOD 3MV6A 1YKPA 1YKPB 1EO9A 1EO9B 3HGIA 3PCNA 4WHOB 3MI5M 1S9AA 3LKTM 3MI1A 2PCDM 3PCEA 3PCFM 3PCHM 3TH1A 3I4YA 3PCJM 3O32A 3MV4M 4WHQA 1YKOA 2XSUA 1YKOB 3PCCM 2BUWB
chains in the Genus database with same CATH topology
2BUXA 3I51A 1TMXA 2BUXB 3MI5A 3PCGM 3LKTA 1YKLA 1YKLB 3PCFA 2BUQA 2BUUB 2BUQB 3HJSA 3N9TA 3T63M 2BUYA 3PCKM 2BUYB 3MFLA 4WHSA 4WHSB 3PCBA 1EO2A 3PCAA 1EO2B 3O6RA 3PCJA 1EOBA 3HJ8A 1EOBB 3HKPA 1DLTA 3PCGA 3HJQA 2BUMA 1YKNA 1YKNB 3PCLM 2XSRA 4WHQB 1DMHA 3PCKA 1DLQA 2BURA 2BURB 3HHXA 3PCMM 4WHRF 2BUTA 2PCDA 3PCHA 4WHSD 3LXVM 2XSVA 3MV6M 3T67M 3PCNM 3MV4A 3O5UA 3PCCA 3O6JA 1EOAA 4WHRA 4WHRB 2BUMB 2BV0A 2BV0B 3LMXM 4ILVA 3T63A 3LXVA 3T67A 2BOYA 4WHOA 3PCDM 2BUTB 3PCIM 3HHYA 1YKKA 1YKKB 4WHPD 3I4VA 5TD3A 3MFLM 4WHPA 4WHPB 3PCBM 3PCAM 3PCLA 3LMXA 3MI1M 2BUVA 2BUVB 3PCEM 1EOAB 3PCMA 2BUWA 1EOCA 1EOCB 3PCDA 3PCIA 4ILTA 2AZQA 2BUZA 1DLMA 2BUZB 2BUUA 1YKMA 1YKMB 4WHOD 3MV6A 1YKPA 1YKPB 1EO9A 1EO9B 3HGIA 3PCNA 4WHOB 3MI5M 1S9AA 3LKTM 3MI1A 2PCDM 3PCEA 3PCFM 3PCHM 3TH1A 3I4YA 3PCJM 3O32A 3MV4M 4WHQA 1YKOA 2XSUA 1YKOB 3PCCM 2BUWB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUX A;  3I51 A;  1TMX A;  2BUX B;  3MI5 A;  3PCG M;  3LKT A;  1YKL A;  1YKL B;  3PCF A;  2BUQ A;  2BUU B;  2BUQ B;  3HJS A;  3N9T A;  3T63 M;  2BUY A;  3PCK M;  2BUY B;  3MFL A;  4WHS A;  4WHS B;  3PCB A;  1EO2 A;  3PCA A;  1EO2 B;  3O6R A;  3PCJ A;  1EOB A;  3HJ8 A;  1EOB B;  3HKP A;  1DLT A;  3PCG A;  3HJQ A;  2BUM A;  1YKN A;  1YKN B;  3PCL M;  2XSR A;  4WHQ B;  1DMH A;  3PCK A;  1DLQ A;  2BUR A;  2BUR B;  3HHX A;  3PCM M;  4WHR F;  2BUT A;  2PCD A;  3PCH A;  4WHS D;  3LXV M;  2XSV A;  3MV6 M;  3T67 M;  3PCN M;  3MV4 A;  3O5U A;  3PCC A;  3O6J A;  1EOA A;  4WHR A;  4WHR B;  2BUM B;  2BV0 A;  2BV0 B;  3LMX M;  4ILV A;  3T63 A;  3LXV A;  3T67 A;  2BOY A;  4WHO A;  3PCD M;  2BUT B;  3PCI M;  3HHY A;  1YKK A;  1YKK B;  4WHP D;  3I4V A;  5TD3 A;  3MFL M;  4WHP A;  4WHP B;  3PCB M;  3PCA M;  3PCL A;  3LMX A;  3MI1 M;  2BUV A;  2BUV B;  3PCE M;  1EOA B;  3PCM A;  2BUW A;  1EOC A;  1EOC B;  3PCD A;  3PCI A;  4ILT A;  2AZQ A;  2BUZ A;  1DLM A;  2BUZ B;  2BUU A;  1YKM A;  1YKM B;  4WHO D;  3MV6 A;  1YKP A;  1YKP B;  1EO9 A;  1EO9 B;  3HGI A;  3PCN A;  4WHO B;  3MI5 M;  1S9A A;  3LKT M;  3MI1 A;  2PCD M;  3PCE A;  3PCF M;  3PCH M;  3TH1 A;  3I4Y A;  3PCJ M;  3O32 A;  3MV4 M;  4WHQ A;  1YKO A;  2XSU A;  1YKO B;  3PCC M;  2BUW B; 
#chains in the Genus database with same CATH topology
 2BUX A;  3I51 A;  1TMX A;  2BUX B;  3MI5 A;  3PCG M;  3LKT A;  1YKL A;  1YKL B;  3PCF A;  2BUQ A;  2BUU B;  2BUQ B;  3HJS A;  3N9T A;  3T63 M;  2BUY A;  3PCK M;  2BUY B;  3MFL A;  4WHS A;  4WHS B;  3PCB A;  1EO2 A;  3PCA A;  1EO2 B;  3O6R A;  3PCJ A;  1EOB A;  3HJ8 A;  1EOB B;  3HKP A;  1DLT A;  3PCG A;  3HJQ A;  2BUM A;  1YKN A;  1YKN B;  3PCL M;  2XSR A;  4WHQ B;  1DMH A;  3PCK A;  1DLQ A;  2BUR A;  2BUR B;  3HHX A;  3PCM M;  4WHR F;  2BUT A;  2PCD A;  3PCH A;  4WHS D;  3LXV M;  2XSV A;  3MV6 M;  3T67 M;  3PCN M;  3MV4 A;  3O5U A;  3PCC A;  3O6J A;  1EOA A;  4WHR A;  4WHR B;  2BUM B;  2BV0 A;  2BV0 B;  3LMX M;  4ILV A;  3T63 A;  3LXV A;  3T67 A;  2BOY A;  4WHO A;  3PCD M;  2BUT B;  3PCI M;  3HHY A;  1YKK A;  1YKK B;  4WHP D;  3I4V A;  5TD3 A;  3MFL M;  4WHP A;  4WHP B;  3PCB M;  3PCA M;  3PCL A;  3LMX A;  3MI1 M;  2BUV A;  2BUV B;  3PCE M;  1EOA B;  3PCM A;  2BUW A;  1EOC A;  1EOC B;  3PCD A;  3PCI A;  4ILT A;  2AZQ A;  2BUZ A;  1DLM A;  2BUZ B;  2BUU A;  1YKM A;  1YKM B;  4WHO D;  3MV6 A;  1YKP A;  1YKP B;  1EO9 A;  1EO9 B;  3HGI A;  3PCN A;  4WHO B;  3MI5 M;  1S9A A;  3LKT M;  3MI1 A;  2PCD M;  3PCE A;  3PCF M;  3PCH M;  3TH1 A;  3I4Y A;  3PCJ M;  3O32 A;  3MV4 M;  4WHQ A;  1YKO A;  2XSU A;  1YKO B;  3PCC M;  2BUW B; 
#chains in the Genus database with same CATH homology
 2BUX A;  3I51 A;  1TMX A;  2BUX B;  3MI5 A;  3PCG M;  3LKT A;  1YKL A;  1YKL B;  3PCF A;  2BUQ A;  2BUU B;  2BUQ B;  3HJS A;  3N9T A;  3T63 M;  2BUY A;  3PCK M;  2BUY B;  3MFL A;  4WHS A;  4WHS B;  3PCB A;  1EO2 A;  3PCA A;  1EO2 B;  3O6R A;  3PCJ A;  1EOB A;  3HJ8 A;  1EOB B;  3HKP A;  1DLT A;  3PCG A;  3HJQ A;  2BUM A;  1YKN A;  1YKN B;  3PCL M;  2XSR A;  4WHQ B;  1DMH A;  3PCK A;  1DLQ A;  2BUR A;  2BUR B;  3HHX A;  3PCM M;  4WHR F;  2BUT A;  2PCD A;  3PCH A;  4WHS D;  3LXV M;  2XSV A;  3MV6 M;  3T67 M;  3PCN M;  3MV4 A;  3O5U A;  3PCC A;  3O6J A;  1EOA A;  4WHR A;  4WHR B;  2BUM B;  2BV0 A;  2BV0 B;  3LMX M;  4ILV A;  3T63 A;  3LXV A;  3T67 A;  2BOY A;  4WHO A;  3PCD M;  2BUT B;  3PCI M;  3HHY A;  1YKK A;  1YKK B;  4WHP D;  3I4V A;  5TD3 A;  3MFL M;  4WHP A;  4WHP B;  3PCB M;  3PCA M;  3PCL A;  3LMX A;  3MI1 M;  2BUV A;  2BUV B;  3PCE M;  1EOA B;  3PCM A;  2BUW A;  1EOC A;  1EOC B;  3PCD A;  3PCI A;  4ILT A;  2AZQ A;  2BUZ A;  1DLM A;  2BUZ B;  2BUU A;  1YKM A;  1YKM B;  4WHO D;  3MV6 A;  1YKP A;  1YKP B;  1EO9 A;  1EO9 B;  3HGI A;  3PCN A;  4WHO B;  3MI5 M;  1S9A A;  3LKT M;  3MI1 A;  2PCD M;  3PCE A;  3PCF M;  3PCH M;  3TH1 A;  3I4Y A;  3PCJ M;  3O32 A;  3MV4 M;  4WHQ A;  1YKO A;  2XSU A;  1YKO B;  3PCC M;  2BUW B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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