2BUXA

Crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r133h
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
202
structure length
202
Chain Sequence
ELKETPSQTGGPYVHIGLLPKQANIEVFEHNLDNNLVQDNTQGQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPGRKGSTQAPHISLIIFAHGINIGLHTRVYFDDEAEANAKDPVLNSIEWATRRQTLVAKREERDGEVVYRFDIRIQGENETVFFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
publication title Crystallographic Studies of Intradiol Dioxygenases.
rcsb
source organism Acinetobacter calcoaceticus
total genus 41
structure length 202
sequence length 202
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2005-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 2buxA00
3MV6M 1YKNA 1YKPB 3PCNM 3PCCA 2BUQA 3HJQA 2BUXA 2XSVA 3PCHM 4WHOD 3N9TA 3O32A 4ILVA 1YKOA 3MI5M 2XSUA 3PCDM 3MI1M 2BUUA 3I4VA 3PCJM 2BUYB 3MV4A 3MFLA 1EOBA 3PCEM 3PCFA 4WHPA 2BURA 3HHXA 3PCGM 1YKKB 3LMXA 2BUMB 2PCDA 3PCMM 4WHQA 2AZQA 3T67M 3O6JA 4WHSD 1EO9A 1DLQA 4WHPD 1YKPA 3O6RA 3LXVM 2BUWB 3T63M 3LKTM 3MV6A 1EOCB 3PCKM 3PCNA 1EOAB 1YKLB 2BUVB 2XSRA 2BV0B 3PCHA 3I4YA 3PCFM 3HJSA 3PCIM 3PCBM 3PCAM 2BUYA 3PCLM 3MI5A 1EOAA 4WHOB 3TH1A 4WHSB 1YKMB 2BUTB 3PCDA 3PCCM 2BOYA 3MI1A 1TMXA 4WHRB 1EO2B 1S9AA 3PCEA 1YKKA 2BUMA 1YKNB 3HGIA 2BUQB 2BUXB 1DLTA 4WHRA 3PCGA 3PCMA 2BUZB 1DLMA 1DMHA 3T67A 3MV4M 3MFLM 1YKOB 2BUWA 4ILTA 2BUUB 3I51A 5TD3A 1EOCA 2BUZA 1EOBB 3LXVA 3HKPA 1YKLA 2BUVA 2BV0A 3LMXM 2PCDM 4WHRF 3LKTA 3PCJA 3T63A 4WHPB 2BURB 3PCKA 3HHYA 4WHQB 4WHOA 4WHSA 1YKMA 2BUTA 3PCIA 1EO9B 3PCBA 1EO2A 3HJ8A 3O5UA 3PCAA 3PCLA
chains in the Genus database with same CATH superfamily
3MV6M 1YKNA 1YKPB 3PCNM 3PCCA 2BUQA 3HJQA 2BUXA 2XSVA 3PCHM 4WHOD 3N9TA 3O32A 4ILVA 1YKOA 3MI5M 2XSUA 3PCDM 3MI1M 2BUUA 3I4VA 3PCJM 2BUYB 3MV4A 3MFLA 1EOBA 3PCEM 3PCFA 4WHPA 2BURA 3HHXA 3PCGM 1YKKB 3LMXA 2BUMB 2PCDA 3PCMM 4WHQA 2AZQA 3T67M 3O6JA 4WHSD 1EO9A 1DLQA 4WHPD 1YKPA 3O6RA 3LXVM 2BUWB 3T63M 3LKTM 3MV6A 1EOCB 3PCKM 3PCNA 1EOAB 1YKLB 2BUVB 2XSRA 2BV0B 3PCHA 3I4YA 3PCFM 3HJSA 3PCIM 3PCBM 3PCAM 2BUYA 3PCLM 3MI5A 1EOAA 4WHOB 3TH1A 4WHSB 1YKMB 2BUTB 3PCDA 3PCCM 2BOYA 3MI1A 1TMXA 4WHRB 1EO2B 1S9AA 3PCEA 1YKKA 2BUMA 1YKNB 3HGIA 2BUQB 2BUXB 1DLTA 4WHRA 3PCGA 3PCMA 2BUZB 1DLMA 1DMHA 3T67A 3MV4M 3MFLM 1YKOB 2BUWA 4ILTA 2BUUB 3I51A 5TD3A 1EOCA 2BUZA 1EOBB 3LXVA 3HKPA 1YKLA 2BUVA 2BV0A 3LMXM 2PCDM 4WHRF 3LKTA 3PCJA 3T63A 4WHPB 2BURB 3PCKA 3HHYA 4WHQB 4WHOA 4WHSA 1YKMA 2BUTA 3PCIA 1EO9B 3PCBA 1EO2A 3HJ8A 3O5UA 3PCAA 3PCLA
chains in the Genus database with same CATH topology
3MV6M 1YKNA 1YKPB 3PCNM 3PCCA 2BUQA 3HJQA 2BUXA 2XSVA 3PCHM 4WHOD 3N9TA 3O32A 4ILVA 1YKOA 3MI5M 2XSUA 3PCDM 3MI1M 2BUUA 3I4VA 3PCJM 2BUYB 3MV4A 3MFLA 1EOBA 3PCEM 3PCFA 4WHPA 2BURA 3HHXA 3PCGM 1YKKB 3LMXA 2BUMB 2PCDA 3PCMM 4WHQA 2AZQA 3T67M 3O6JA 4WHSD 1EO9A 1DLQA 4WHPD 1YKPA 3O6RA 3LXVM 2BUWB 3T63M 3LKTM 3MV6A 1EOCB 3PCKM 3PCNA 1EOAB 1YKLB 2BUVB 2XSRA 2BV0B 3PCHA 3I4YA 3PCFM 3HJSA 3PCIM 3PCBM 3PCAM 2BUYA 3PCLM 3MI5A 1EOAA 4WHOB 3TH1A 4WHSB 1YKMB 2BUTB 3PCDA 3PCCM 2BOYA 3MI1A 1TMXA 4WHRB 1EO2B 1S9AA 3PCEA 1YKKA 2BUMA 1YKNB 3HGIA 2BUQB 2BUXB 1DLTA 4WHRA 3PCGA 3PCMA 2BUZB 1DLMA 1DMHA 3T67A 3MV4M 3MFLM 1YKOB 2BUWA 4ILTA 2BUUB 3I51A 5TD3A 1EOCA 2BUZA 1EOBB 3LXVA 3HKPA 1YKLA 2BUVA 2BV0A 3LMXM 2PCDM 4WHRF 3LKTA 3PCJA 3T63A 4WHPB 2BURB 3PCKA 3HHYA 4WHQB 4WHOA 4WHSA 1YKMA 2BUTA 3PCIA 1EO9B 3PCBA 1EO2A 3HJ8A 3O5UA 3PCAA 3PCLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MV6 M;  1YKN A;  1YKP B;  3PCN M;  3PCC A;  2BUQ A;  3HJQ A;  2BUX A;  2XSV A;  3PCH M;  4WHO D;  3N9T A;  3O32 A;  4ILV A;  1YKO A;  3MI5 M;  2XSU A;  3PCD M;  3MI1 M;  2BUU A;  3I4V A;  3PCJ M;  2BUY B;  3MV4 A;  3MFL A;  1EOB A;  3PCE M;  3PCF A;  4WHP A;  2BUR A;  3HHX A;  3PCG M;  1YKK B;  3LMX A;  2BUM B;  2PCD A;  3PCM M;  4WHQ A;  2AZQ A;  3T67 M;  3O6J A;  4WHS D;  1EO9 A;  1DLQ A;  4WHP D;  1YKP A;  3O6R A;  3LXV M;  2BUW B;  3T63 M;  3LKT M;  3MV6 A;  1EOC B;  3PCK M;  3PCN A;  1EOA B;  1YKL B;  2BUV B;  2XSR A;  2BV0 B;  3PCH A;  3I4Y A;  3PCF M;  3HJS A;  3PCI M;  3PCB M;  3PCA M;  2BUY A;  3PCL M;  3MI5 A;  1EOA A;  4WHO B;  3TH1 A;  4WHS B;  1YKM B;  2BUT B;  3PCD A;  3PCC M;  2BOY A;  3MI1 A;  1TMX A;  4WHR B;  1EO2 B;  1S9A A;  3PCE A;  1YKK A;  2BUM A;  1YKN B;  3HGI A;  2BUQ B;  2BUX B;  1DLT A;  4WHR A;  3PCG A;  3PCM A;  2BUZ B;  1DLM A;  1DMH A;  3T67 A;  3MV4 M;  3MFL M;  1YKO B;  2BUW A;  4ILT A;  2BUU B;  3I51 A;  5TD3 A;  1EOC A;  2BUZ A;  1EOB B;  3LXV A;  3HKP A;  1YKL A;  2BUV A;  2BV0 A;  3LMX M;  2PCD M;  4WHR F;  3LKT A;  3PCJ A;  3T63 A;  4WHP B;  2BUR B;  3PCK A;  3HHY A;  4WHQ B;  4WHO A;  4WHS A;  1YKM A;  2BUT A;  3PCI A;  1EO9 B;  3PCB A;  1EO2 A;  3HJ8 A;  3O5U A;  3PCA A;  3PCL A; 
#chains in the Genus database with same CATH topology
 3MV6 M;  1YKN A;  1YKP B;  3PCN M;  3PCC A;  2BUQ A;  3HJQ A;  2BUX A;  2XSV A;  3PCH M;  4WHO D;  3N9T A;  3O32 A;  4ILV A;  1YKO A;  3MI5 M;  2XSU A;  3PCD M;  3MI1 M;  2BUU A;  3I4V A;  3PCJ M;  2BUY B;  3MV4 A;  3MFL A;  1EOB A;  3PCE M;  3PCF A;  4WHP A;  2BUR A;  3HHX A;  3PCG M;  1YKK B;  3LMX A;  2BUM B;  2PCD A;  3PCM M;  4WHQ A;  2AZQ A;  3T67 M;  3O6J A;  4WHS D;  1EO9 A;  1DLQ A;  4WHP D;  1YKP A;  3O6R A;  3LXV M;  2BUW B;  3T63 M;  3LKT M;  3MV6 A;  1EOC B;  3PCK M;  3PCN A;  1EOA B;  1YKL B;  2BUV B;  2XSR A;  2BV0 B;  3PCH A;  3I4Y A;  3PCF M;  3HJS A;  3PCI M;  3PCB M;  3PCA M;  2BUY A;  3PCL M;  3MI5 A;  1EOA A;  4WHO B;  3TH1 A;  4WHS B;  1YKM B;  2BUT B;  3PCD A;  3PCC M;  2BOY A;  3MI1 A;  1TMX A;  4WHR B;  1EO2 B;  1S9A A;  3PCE A;  1YKK A;  2BUM A;  1YKN B;  3HGI A;  2BUQ B;  2BUX B;  1DLT A;  4WHR A;  3PCG A;  3PCM A;  2BUZ B;  1DLM A;  1DMH A;  3T67 A;  3MV4 M;  3MFL M;  1YKO B;  2BUW A;  4ILT A;  2BUU B;  3I51 A;  5TD3 A;  1EOC A;  2BUZ A;  1EOB B;  3LXV A;  3HKP A;  1YKL A;  2BUV A;  2BV0 A;  3LMX M;  2PCD M;  4WHR F;  3LKT A;  3PCJ A;  3T63 A;  4WHP B;  2BUR B;  3PCK A;  3HHY A;  4WHQ B;  4WHO A;  4WHS A;  1YKM A;  2BUT A;  3PCI A;  1EO9 B;  3PCB A;  1EO2 A;  3HJ8 A;  3O5U A;  3PCA A;  3PCL A; 
#chains in the Genus database with same CATH homology
 3MV6 M;  1YKN A;  1YKP B;  3PCN M;  3PCC A;  2BUQ A;  3HJQ A;  2BUX A;  2XSV A;  3PCH M;  4WHO D;  3N9T A;  3O32 A;  4ILV A;  1YKO A;  3MI5 M;  2XSU A;  3PCD M;  3MI1 M;  2BUU A;  3I4V A;  3PCJ M;  2BUY B;  3MV4 A;  3MFL A;  1EOB A;  3PCE M;  3PCF A;  4WHP A;  2BUR A;  3HHX A;  3PCG M;  1YKK B;  3LMX A;  2BUM B;  2PCD A;  3PCM M;  4WHQ A;  2AZQ A;  3T67 M;  3O6J A;  4WHS D;  1EO9 A;  1DLQ A;  4WHP D;  1YKP A;  3O6R A;  3LXV M;  2BUW B;  3T63 M;  3LKT M;  3MV6 A;  1EOC B;  3PCK M;  3PCN A;  1EOA B;  1YKL B;  2BUV B;  2XSR A;  2BV0 B;  3PCH A;  3I4Y A;  3PCF M;  3HJS A;  3PCI M;  3PCB M;  3PCA M;  2BUY A;  3PCL M;  3MI5 A;  1EOA A;  4WHO B;  3TH1 A;  4WHS B;  1YKM B;  2BUT B;  3PCD A;  3PCC M;  2BOY A;  3MI1 A;  1TMX A;  4WHR B;  1EO2 B;  1S9A A;  3PCE A;  1YKK A;  2BUM A;  1YKN B;  3HGI A;  2BUQ B;  2BUX B;  1DLT A;  4WHR A;  3PCG A;  3PCM A;  2BUZ B;  1DLM A;  1DMH A;  3T67 A;  3MV4 M;  3MFL M;  1YKO B;  2BUW A;  4ILT A;  2BUU B;  3I51 A;  5TD3 A;  1EOC A;  2BUZ A;  1EOB B;  3LXV A;  3HKP A;  1YKL A;  2BUV A;  2BV0 A;  3LMX M;  2PCD M;  4WHR F;  3LKT A;  3PCJ A;  3T63 A;  4WHP B;  2BUR B;  3PCK A;  3HHY A;  4WHQ B;  4WHO A;  4WHS A;  1YKM A;  2BUT A;  3PCI A;  1EO9 B;  3PCB A;  1EO2 A;  3HJ8 A;  3O5U A;  3PCA A;  3PCL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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