2BUZA

Crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r133h in complex with 4-nitrocatechol
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
202
structure length
202
Chain Sequence
ELKETPSQTGGPYVHIGLLPKQANIEVFEHNLDNNLVQDNTQGQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPGRKGSTQAPHISLIIFAHGINIGLHTRVYFDDEAEANAKDPVLNSIEWATRRQTLVAKREERDGEVVYRFDIRIQGENETVFFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
publication title Crystallographic Studies of Intradiol Dioxygenases
rcsb
source organism Acinetobacter calcoaceticus
total genus 40
structure length 202
sequence length 202
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2005-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 2buzA00
1YKMA 2BOYA 3PCGM 4WHRF 3MV6A 1DMHA 3LKTA 1YKLB 1DLTA 3O6JA 1EOBA 3PCKA 1EOBB 2AZQA 1YKPA 2BUXA 2XSVA 1YKPB 2BUXB 3MV6M 3LKTM 4WHRB 2BUWA 4WHQA 2BV0B 3LMXA 3HHXA 3PCKM 3O5UA 4WHSA 4WHSB 2BUVA 1EOAA 1EOAB 4WHOD 4WHPA 4WHPB 1EOCA 2BUZB 3PCCA 1YKMB 3LXVA 4ILVA 3LMXM 3T67M 2BUQA 2PCDA 3PCLM 3PCCM 3LXVM 1S9AA 3PCDA 3HHYA 4ILTA 2BUWB 4WHQB 3HJSA 3MV4M 2PCDM 4WHOA 3I51A 2BUVB 3T67A 1EOCB 3PCDM 4WHPD 1YKOA 3PCLA 3PCAM 3PCMA 3MI1A 2BUYA 2BURA 3PCNA 3N9TA 3O6RA 1TMXA 1YKNA 3MV4A 2BUQB 1EO2A 1EO9A 2XSUA 1DLQA 3MFLA 3PCMM 3MI1M 3PCNM 3T63A 3PCAA 3PCBM 3I4YA 3I4VA 3PCIA 2BUUA 2BUUB 1DLMA 3PCEM 4WHOB 1YKLA 3MFLM 2BUTA 3HJ8A 2BUTB 3PCFA 1YKOB 3HJQA 3PCHA 3T63M 2BUMA 2BUMB 3MI5A 3PCIM 3PCJA 2BUYB 2BURB 3PCBA 1YKNB 1EO2B 4WHRA 3PCFM 1EO9B 3PCEA 3PCGA 2BV0A 3PCHM 2XSRA 3HGIA 3O32A 3MI5M 1YKKA 4WHSD 3PCJM 1YKKB 5TD3A 2BUZA 3HKPA 3TH1A
chains in the Genus database with same CATH superfamily
1YKMA 2BOYA 3PCGM 4WHRF 3MV6A 1DMHA 3LKTA 1YKLB 1DLTA 3O6JA 1EOBA 3PCKA 1EOBB 2AZQA 1YKPA 2BUXA 2XSVA 1YKPB 2BUXB 3MV6M 3LKTM 4WHRB 2BUWA 4WHQA 2BV0B 3LMXA 3HHXA 3PCKM 3O5UA 4WHSA 4WHSB 2BUVA 1EOAA 1EOAB 4WHOD 4WHPA 4WHPB 1EOCA 2BUZB 3PCCA 1YKMB 3LXVA 4ILVA 3LMXM 3T67M 2BUQA 2PCDA 3PCLM 3PCCM 3LXVM 1S9AA 3PCDA 3HHYA 4ILTA 2BUWB 4WHQB 3HJSA 3MV4M 2PCDM 4WHOA 3I51A 2BUVB 3T67A 1EOCB 3PCDM 4WHPD 1YKOA 3PCLA 3PCAM 3PCMA 3MI1A 2BUYA 2BURA 3PCNA 3N9TA 3O6RA 1TMXA 1YKNA 3MV4A 2BUQB 1EO2A 1EO9A 2XSUA 1DLQA 3MFLA 3PCMM 3MI1M 3PCNM 3T63A 3PCAA 3PCBM 3I4YA 3I4VA 3PCIA 2BUUA 2BUUB 1DLMA 3PCEM 4WHOB 1YKLA 3MFLM 2BUTA 3HJ8A 2BUTB 3PCFA 1YKOB 3HJQA 3PCHA 3T63M 2BUMA 2BUMB 3MI5A 3PCIM 3PCJA 2BUYB 2BURB 3PCBA 1YKNB 1EO2B 4WHRA 3PCFM 1EO9B 3PCEA 3PCGA 2BV0A 3PCHM 2XSRA 3HGIA 3O32A 3MI5M 1YKKA 4WHSD 3PCJM 1YKKB 5TD3A 2BUZA 3HKPA 3TH1A
chains in the Genus database with same CATH topology
1YKMA 2BOYA 3PCGM 4WHRF 3MV6A 1DMHA 3LKTA 1YKLB 1DLTA 3O6JA 1EOBA 3PCKA 1EOBB 2AZQA 1YKPA 2BUXA 2XSVA 1YKPB 2BUXB 3MV6M 3LKTM 4WHRB 2BUWA 4WHQA 2BV0B 3LMXA 3HHXA 3PCKM 3O5UA 4WHSA 4WHSB 2BUVA 1EOAA 1EOAB 4WHOD 4WHPA 4WHPB 1EOCA 2BUZB 3PCCA 1YKMB 3LXVA 4ILVA 3LMXM 3T67M 2BUQA 2PCDA 3PCLM 3PCCM 3LXVM 1S9AA 3PCDA 3HHYA 4ILTA 2BUWB 4WHQB 3HJSA 3MV4M 2PCDM 4WHOA 3I51A 2BUVB 3T67A 1EOCB 3PCDM 4WHPD 1YKOA 3PCLA 3PCAM 3PCMA 3MI1A 2BUYA 2BURA 3PCNA 3N9TA 3O6RA 1TMXA 1YKNA 3MV4A 2BUQB 1EO2A 1EO9A 2XSUA 1DLQA 3MFLA 3PCMM 3MI1M 3PCNM 3T63A 3PCAA 3PCBM 3I4YA 3I4VA 3PCIA 2BUUA 2BUUB 1DLMA 3PCEM 4WHOB 1YKLA 3MFLM 2BUTA 3HJ8A 2BUTB 3PCFA 1YKOB 3HJQA 3PCHA 3T63M 2BUMA 2BUMB 3MI5A 3PCIM 3PCJA 2BUYB 2BURB 3PCBA 1YKNB 1EO2B 4WHRA 3PCFM 1EO9B 3PCEA 3PCGA 2BV0A 3PCHM 2XSRA 3HGIA 3O32A 3MI5M 1YKKA 4WHSD 3PCJM 1YKKB 5TD3A 2BUZA 3HKPA 3TH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YKM A;  2BOY A;  3PCG M;  4WHR F;  3MV6 A;  1DMH A;  3LKT A;  1YKL B;  1DLT A;  3O6J A;  1EOB A;  3PCK A;  1EOB B;  2AZQ A;  1YKP A;  2BUX A;  2XSV A;  1YKP B;  2BUX B;  3MV6 M;  3LKT M;  4WHR B;  2BUW A;  4WHQ A;  2BV0 B;  3LMX A;  3HHX A;  3PCK M;  3O5U A;  4WHS A;  4WHS B;  2BUV A;  1EOA A;  1EOA B;  4WHO D;  4WHP A;  4WHP B;  1EOC A;  2BUZ B;  3PCC A;  1YKM B;  3LXV A;  4ILV A;  3LMX M;  3T67 M;  2BUQ A;  2PCD A;  3PCL M;  3PCC M;  3LXV M;  1S9A A;  3PCD A;  3HHY A;  4ILT A;  2BUW B;  4WHQ B;  3HJS A;  3MV4 M;  2PCD M;  4WHO A;  3I51 A;  2BUV B;  3T67 A;  1EOC B;  3PCD M;  4WHP D;  1YKO A;  3PCL A;  3PCA M;  3PCM A;  3MI1 A;  2BUY A;  2BUR A;  3PCN A;  3N9T A;  3O6R A;  1TMX A;  1YKN A;  3MV4 A;  2BUQ B;  1EO2 A;  1EO9 A;  2XSU A;  1DLQ A;  3MFL A;  3PCM M;  3MI1 M;  3PCN M;  3T63 A;  3PCA A;  3PCB M;  3I4Y A;  3I4V A;  3PCI A;  2BUU A;  2BUU B;  1DLM A;  3PCE M;  4WHO B;  1YKL A;  3MFL M;  2BUT A;  3HJ8 A;  2BUT B;  3PCF A;  1YKO B;  3HJQ A;  3PCH A;  3T63 M;  2BUM A;  2BUM B;  3MI5 A;  3PCI M;  3PCJ A;  2BUY B;  2BUR B;  3PCB A;  1YKN B;  1EO2 B;  4WHR A;  3PCF M;  1EO9 B;  3PCE A;  3PCG A;  2BV0 A;  3PCH M;  2XSR A;  3HGI A;  3O32 A;  3MI5 M;  1YKK A;  4WHS D;  3PCJ M;  1YKK B;  5TD3 A;  2BUZ A;  3HKP A;  3TH1 A; 
#chains in the Genus database with same CATH topology
 1YKM A;  2BOY A;  3PCG M;  4WHR F;  3MV6 A;  1DMH A;  3LKT A;  1YKL B;  1DLT A;  3O6J A;  1EOB A;  3PCK A;  1EOB B;  2AZQ A;  1YKP A;  2BUX A;  2XSV A;  1YKP B;  2BUX B;  3MV6 M;  3LKT M;  4WHR B;  2BUW A;  4WHQ A;  2BV0 B;  3LMX A;  3HHX A;  3PCK M;  3O5U A;  4WHS A;  4WHS B;  2BUV A;  1EOA A;  1EOA B;  4WHO D;  4WHP A;  4WHP B;  1EOC A;  2BUZ B;  3PCC A;  1YKM B;  3LXV A;  4ILV A;  3LMX M;  3T67 M;  2BUQ A;  2PCD A;  3PCL M;  3PCC M;  3LXV M;  1S9A A;  3PCD A;  3HHY A;  4ILT A;  2BUW B;  4WHQ B;  3HJS A;  3MV4 M;  2PCD M;  4WHO A;  3I51 A;  2BUV B;  3T67 A;  1EOC B;  3PCD M;  4WHP D;  1YKO A;  3PCL A;  3PCA M;  3PCM A;  3MI1 A;  2BUY A;  2BUR A;  3PCN A;  3N9T A;  3O6R A;  1TMX A;  1YKN A;  3MV4 A;  2BUQ B;  1EO2 A;  1EO9 A;  2XSU A;  1DLQ A;  3MFL A;  3PCM M;  3MI1 M;  3PCN M;  3T63 A;  3PCA A;  3PCB M;  3I4Y A;  3I4V A;  3PCI A;  2BUU A;  2BUU B;  1DLM A;  3PCE M;  4WHO B;  1YKL A;  3MFL M;  2BUT A;  3HJ8 A;  2BUT B;  3PCF A;  1YKO B;  3HJQ A;  3PCH A;  3T63 M;  2BUM A;  2BUM B;  3MI5 A;  3PCI M;  3PCJ A;  2BUY B;  2BUR B;  3PCB A;  1YKN B;  1EO2 B;  4WHR A;  3PCF M;  1EO9 B;  3PCE A;  3PCG A;  2BV0 A;  3PCH M;  2XSR A;  3HGI A;  3O32 A;  3MI5 M;  1YKK A;  4WHS D;  3PCJ M;  1YKK B;  5TD3 A;  2BUZ A;  3HKP A;  3TH1 A; 
#chains in the Genus database with same CATH homology
 1YKM A;  2BOY A;  3PCG M;  4WHR F;  3MV6 A;  1DMH A;  3LKT A;  1YKL B;  1DLT A;  3O6J A;  1EOB A;  3PCK A;  1EOB B;  2AZQ A;  1YKP A;  2BUX A;  2XSV A;  1YKP B;  2BUX B;  3MV6 M;  3LKT M;  4WHR B;  2BUW A;  4WHQ A;  2BV0 B;  3LMX A;  3HHX A;  3PCK M;  3O5U A;  4WHS A;  4WHS B;  2BUV A;  1EOA A;  1EOA B;  4WHO D;  4WHP A;  4WHP B;  1EOC A;  2BUZ B;  3PCC A;  1YKM B;  3LXV A;  4ILV A;  3LMX M;  3T67 M;  2BUQ A;  2PCD A;  3PCL M;  3PCC M;  3LXV M;  1S9A A;  3PCD A;  3HHY A;  4ILT A;  2BUW B;  4WHQ B;  3HJS A;  3MV4 M;  2PCD M;  4WHO A;  3I51 A;  2BUV B;  3T67 A;  1EOC B;  3PCD M;  4WHP D;  1YKO A;  3PCL A;  3PCA M;  3PCM A;  3MI1 A;  2BUY A;  2BUR A;  3PCN A;  3N9T A;  3O6R A;  1TMX A;  1YKN A;  3MV4 A;  2BUQ B;  1EO2 A;  1EO9 A;  2XSU A;  1DLQ A;  3MFL A;  3PCM M;  3MI1 M;  3PCN M;  3T63 A;  3PCA A;  3PCB M;  3I4Y A;  3I4V A;  3PCI A;  2BUU A;  2BUU B;  1DLM A;  3PCE M;  4WHO B;  1YKL A;  3MFL M;  2BUT A;  3HJ8 A;  2BUT B;  3PCF A;  1YKO B;  3HJQ A;  3PCH A;  3T63 M;  2BUM A;  2BUM B;  3MI5 A;  3PCI M;  3PCJ A;  2BUY B;  2BUR B;  3PCB A;  1YKN B;  1EO2 B;  4WHR A;  3PCF M;  1EO9 B;  3PCE A;  3PCG A;  2BV0 A;  3PCH M;  2XSR A;  3HGI A;  3O32 A;  3MI5 M;  1YKK A;  4WHS D;  3PCJ M;  1YKK B;  5TD3 A;  2BUZ A;  3HKP A;  3TH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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