2BVHA

Crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 2 (p21)
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
453
structure length
453
Chain Sequence
KLATPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVGHLGGLDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of 6-Hydroxy-D-Nicotine Oxidase from Arthrobacter Nicotinovorans.
pubmed doi rcsb
source organism Arthrobacter nicotinovorans
molecule tags Oxidase
molecule keywords 6-HYDROXY-D-NICOTINE OXIDASE
total genus 137
structure length 453
sequence length 453
chains with identical sequence B, C, D
ec nomenclature ec 1.5.3.6: (R)-6-hydroxynicotine oxidase.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2bvhA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2bvhA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2bvhA03
3VTEA 3S1FA 1FO4A 3DEDA 1ZXIC 3FW8A 5FXEA 2NQWA 3HSUA 1N60C 2PLSA 1AHZA 5AE3A 1SB3B 2VFVA 2P3HA 4BC7A 1RM6B 3AM9A 4DNSA 4EC3A 2R8DA 3D2JA 4PVHA 3W8WA 1WVEA 1ZR6A 5ADZA 1DIQA 3JS8A 3B9JB 1T3QC 4PZFA 1N5WC 3AMZA 4ZOHB 4O95A 4PVJA 2I0KA 2QPMA 4MLAA 2QKNA 1JRPA 1AHVA 1W1SA 3S1EA 3TSJA 1N63C 3S1CA 3W8XA 3LLBA 5D79A 4UD8A 3SR6B 4PVKA 2R2ZA 2BVHA 3NVVB 1E8HA 3FWAA 5AWVA 1FFVC 5FXDA 2WDWA 3I99A 2E3TA 1WVFA 4OALA 1VDVA 3ETRB 5K8EA 1VAOA 1FFUC 2BVGA 4JAYA 5I1VA 1MBTA 5G5HB 1DIIA 3HRDC 3D2HA 3AN1A 2Q85A 2IPIA 1E8GA 3FW7A 2PLIA 5L6GA 1W1QA 3C0PA 2W54A 4PVEA 2YVSA 1DZNA 2Y08A 3D2DA 3DQ0A 2VFRA 2W55A 4PYTA 4JB1A 1E0YA 3NVZB 5HQXA 3KJMA 2Y3SA 2VFUA 2EXRA 3NS1B 1W1KA 2VAOA 3FW9A 1AHUA 4BBYA 3TX1A 1N62C 4BCAA 5G5GB 1WYGA 5HHZA 2GQUA 1N61C 5AE1A 3NRZB 2P4PA 3W8ZA 2W3RA 3S1DA 4BC9A 4PWCA 2Y3RA 3LAEA 5FXPA 1W1JA 1QLUA 2GQTA 5HMRA 3PM9A 2MBRA 2OAIA 5FXFA 2VFTA 2VFSA 2BVFA 2W3SA 4HG0A 5I1WA 1N5XA 2Y4GA 1W1RA 3TSHA 1FIQB 3PQBA 3POPA 1HSKA 3RJAA 1I19A 2Q4WA 3GSYA 2AXRA 4ML8A 3NVYB 1W1OA 4XLOA 1W1MA 5L6FA 1QLTA 1E8FA 1F0XA 1MBBA 3RJ8A 2P13A 1UXYA 1V97A 3BW7A 2O3GA 5AE2A 3EUB3 2RK5A 1JROA 4PWBA 1W1LA 3NVWB
chains in the Genus database with same CATH superfamily
3VTEA 3S1FA 1FO4A 3DEDA 1ZXIC 3FW8A 5FXEA 2NQWA 3HSUA 1N60C 2PLSA 1AHZA 5AE3A 1SB3B 2VFVA 2P3HA 4BC7A 1RM6B 3AM9A 4DNSA 4EC3A 2R8DA 3D2JA 4PVHA 3W8WA 1WVEA 1ZR6A 5ADZA 1DIQA 3JS8A 3B9JB 1T3QC 4PZFA 1N5WC 3AMZA 4ZOHB 4O95A 4PVJA 2I0KA 2QPMA 4MLAA 2QKNA 3EJEB 1JRPA 1AHVA 1W1SA 3S1EA 3TSJA 1N63C 3S1CA 3W8XA 3LLBA 5D79A 4UD8A 3SR6B 4PVKA 2R2ZA 2BVHA 3NVVB 1E8HA 3FWAA 5AWVA 1FFVC 5FXDA 2WDWA 3I99A 2E3TA 1WVFA 4OALA 1VDVA 3ETRB 5K8EA 1VAOA 1FFUC 2BVGA 4JAYA 5I1VA 1MBTA 5G5HB 1DIIA 3HRDC 3D2HA 3AN1A 2Q85A 2IPIA 1E8GA 3EJBB 3FW7A 2PLIA 5L6GA 1W1QA 3C0PA 2W54A 4PVEA 2YVSA 1DZNA 2Y08A 3D2DA 3DQ0A 2VFRA 2W55A 4PYTA 4JB1A 1E0YA 3NVZB 5HQXA 3KJMA 2Y3SA 2VFUA 2EXRA 3NS1B 1W1KA 2VAOA 3FW9A 1AHUA 4BBYA 3TX1A 1N62C 4BCAA 5G5GB 1WYGA 5HHZA 2GQUA 1N61C 5AE1A 3NRZB 2P4PA 3W8ZA 2W3RA 3S1DA 4BC9A 4PWCA 2Y3RA 3LAEA 5FXPA 1W1JA 1QLUA 2GQTA 5HMRA 3PM9A 2MBRA 2OAIA 5FXFA 2VFTA 2VFSA 2UUVA 2BVFA 2W3SA 4HG0A 3EJDB 5I1WA 1N5XA 2Y4GA 1W1RA 3TSHA 1FIQB 3PQBA 3POPA 1HSKA 3RJAA 1I19A 2Q4WA 3GSYA 2AXRA 2UUUA 4ML8A 3NVYB 1W1OA 4XLOA 1W1MA 5L6FA 1QLTA 1E8FA 1F0XA 1MBBA 3RJ8A 2P13A 1UXYA 1V97A 3BW7A 2O3GA 5AE2A 3EUB3 2RK5A 1JROA 4PWBA 1W1LA 3NVWB
chains in the Genus database with same CATH topology
3VTEA 3S1FA 1FO4A 3DEDA 1ZXIC 3FW8A 5FXEA 2NQWA 3HSUA 1N60C 2PLSA 1AHZA 5AE3A 1SB3B 2VFVA 2P3HA 4BC7A 1RM6B 3AM9A 4DNSA 4EC3A 2R8DA 3D2JA 4PVHA 3W8WA 1WVEA 1ZR6A 5ADZA 1DIQA 3JS8A 3B9JB 1T3QC 4PZFA 1N5WC 3AMZA 4ZOHB 4O95A 4PVJA 2I0KA 2QPMA 4MLAA 2QKNA 1JRPA 1AHVA 1W1SA 3S1EA 3TSJA 1N63C 3S1CA 3W8XA 3LLBA 5D79A 4UD8A 3SR6B 4PVKA 2R2ZA 2BVHA 3NVVB 1E8HA 3FWAA 5AWVA 1FFVC 5FXDA 2WDWA 3I99A 2E3TA 1WVFA 4OALA 1VDVA 3ETRB 5K8EA 1VAOA 1FFUC 2BVGA 4JAYA 5I1VA 1MBTA 5G5HB 1DIIA 3HRDC 3D2HA 3AN1A 2Q85A 2IPIA 1E8GA 3FW7A 2PLIA 5L6GA 1W1QA 3C0PA 2W54A 4PVEA 2YVSA 1DZNA 2Y08A 3D2DA 3DQ0A 2VFRA 2W55A 4PYTA 4JB1A 1E0YA 3NVZB 5HQXA 3KJMA 2Y3SA 2VFUA 2EXRA 3NS1B 1W1KA 2VAOA 3FW9A 1AHUA 4BBYA 3TX1A 1N62C 4BCAA 5G5GB 1WYGA 5HHZA 2GQUA 1N61C 5AE1A 3NRZB 2P4PA 3W8ZA 2W3RA 3S1DA 4BC9A 4PWCA 2Y3RA 3LAEA 5FXPA 1W1JA 1QLUA 2GQTA 5HMRA 3PM9A 2MBRA 2OAIA 5FXFA 2VFTA 2VFSA 2UUVA 2BVFA 2W3SA 4HG0A 5I1WA 1N5XA 2Y4GA 1W1RA 3TSHA 1FIQB 3PQBA 3POPA 1HSKA 3RJAA 1I19A 2Q4WA 3GSYA 2AXRA 2UUUA 4ML8A 3NVYB 1W1OA 4XLOA 1W1MA 5L6FA 1QLTA 1E8FA 1F0XA 1MBBA 3RJ8A 2P13A 1UXYA 1V97A 3BW7A 2O3GA 5AE2A 3EUB3 2RK5A 1JROA 4PWBA 1W1LA 3NVWB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VTE A;  3S1F A;  1FO4 A;  3DED A;  1ZXI C;  3FW8 A;  5FXE A;  2NQW A;  3HSU A;  1N60 C;  2PLS A;  1AHZ A;  5AE3 A;  1SB3 B;  2VFV A;  2P3H A;  4BC7 A;  1RM6 B;  3AM9 A;  4DNS A;  4EC3 A;  2R8D A;  3D2J A;  4PVH A;  3W8W A;  1WVE A;  1ZR6 A;  5ADZ A;  1DIQ A;  3JS8 A;  3B9J B;  1T3Q C;  4PZF A;  1N5W C;  3AMZ A;  4ZOH B;  4O95 A;  4PVJ A;  2I0K A;  2QPM A;  4MLA A;  2QKN A;  1JRP A;  1AHV A;  1W1S A;  3S1E A;  3TSJ A;  1N63 C;  3S1C A;  3W8X A;  3LLB A;  5D79 A;  4UD8 A;  3SR6 B;  4PVK A;  2R2Z A;  2BVH A;  3NVV B;  1E8H A;  3FWA A;  5AWV A;  1FFV C;  5FXD A;  2WDW A;  3I99 A;  2E3T A;  1WVF A;  4OAL A;  1VDV A;  3ETR B;  5K8E A;  1VAO A;  1FFU C;  2BVG A;  4JAY A;  5I1V A;  1MBT A;  5G5H B;  1DII A;  3HRD C;  3D2H A;  3AN1 A;  2Q85 A;  2IPI A;  1E8G A;  3FW7 A;  2PLI A;  5L6G A;  1W1Q A;  3C0P A;  2W54 A;  4PVE A;  2YVS A;  1DZN A;  2Y08 A;  3D2D A;  3DQ0 A;  2VFR A;  2W55 A;  4PYT A;  4JB1 A;  1E0Y A;  3NVZ B;  5HQX A;  3KJM A;  2Y3S A;  2VFU A;  2EXR A;  3NS1 B;  1W1K A;  2VAO A;  3FW9 A;  1AHU A;  4BBY A;  3TX1 A;  1N62 C;  4BCA A;  5G5G B;  1WYG A;  5HHZ A;  2GQU A;  1N61 C;  5AE1 A;  3NRZ B;  2P4P A;  3W8Z A;  2W3R A;  3S1D A;  4BC9 A;  4PWC A;  2Y3R A;  3LAE A;  5FXP A;  1W1J A;  1QLU A;  2GQT A;  5HMR A;  3PM9 A;  2MBR A;  2OAI A;  5FXF A;  2VFT A;  2VFS A;  2BVF A;  2W3S A;  4HG0 A;  5I1W A;  1N5X A;  2Y4G A;  1W1R A;  3TSH A;  1FIQ B;  3PQB A;  3POP A;  1HSK A;  3RJA A;  1I19 A;  2Q4W A;  3GSY A;  2AXR A;  4ML8 A;  3NVY B;  1W1O A;  4XLO A;  1W1M A;  5L6F A;  1QLT A;  1E8F A;  1F0X A;  1MBB A;  3RJ8 A;  2P13 A;  1UXY A;  1V97 A;  3BW7 A;  2O3G A;  5AE2 A;  3EUB 3;  2RK5 A;  1JRO A;  4PWB A;  1W1L A;  3NVW B; 
#chains in the Genus database with same CATH topology
 3VTE A;  3S1F A;  1FO4 A;  3DED A;  1ZXI C;  3FW8 A;  5FXE A;  2NQW A;  3HSU A;  1N60 C;  2PLS A;  1AHZ A;  5AE3 A;  1SB3 B;  2VFV A;  2P3H A;  4BC7 A;  1RM6 B;  3AM9 A;  4DNS A;  4EC3 A;  2R8D A;  3D2J A;  4PVH A;  3W8W A;  1WVE A;  1ZR6 A;  5ADZ A;  1DIQ A;  3JS8 A;  3B9J B;  1T3Q C;  4PZF A;  1N5W C;  3AMZ A;  4ZOH B;  4O95 A;  4PVJ A;  2I0K A;  2QPM A;  4MLA A;  2QKN A;  3EJE B;  1JRP A;  1AHV A;  1W1S A;  3S1E A;  3TSJ A;  1N63 C;  3S1C A;  3W8X A;  3LLB A;  5D79 A;  4UD8 A;  3SR6 B;  4PVK A;  2R2Z A;  2BVH A;  3NVV B;  1E8H A;  3FWA A;  5AWV A;  1FFV C;  5FXD A;  2WDW A;  3I99 A;  2E3T A;  1WVF A;  4OAL A;  1VDV A;  3ETR B;  5K8E A;  1VAO A;  1FFU C;  2BVG A;  4JAY A;  5I1V A;  1MBT A;  5G5H B;  1DII A;  3HRD C;  3D2H A;  3AN1 A;  2Q85 A;  2IPI A;  1E8G A;  3EJB B;  3FW7 A;  2PLI A;  5L6G A;  1W1Q A;  3C0P A;  2W54 A;  4PVE A;  2YVS A;  1DZN A;  2Y08 A;  3D2D A;  3DQ0 A;  2VFR A;  2W55 A;  4PYT A;  4JB1 A;  1E0Y A;  3NVZ B;  5HQX A;  3KJM A;  2Y3S A;  2VFU A;  2EXR A;  3NS1 B;  1W1K A;  2VAO A;  3FW9 A;  1AHU A;  4BBY A;  3TX1 A;  1N62 C;  4BCA A;  5G5G B;  1WYG A;  5HHZ A;  2GQU A;  1N61 C;  5AE1 A;  3NRZ B;  2P4P A;  3W8Z A;  2W3R A;  3S1D A;  4BC9 A;  4PWC A;  2Y3R A;  3LAE A;  5FXP A;  1W1J A;  1QLU A;  2GQT A;  5HMR A;  3PM9 A;  2MBR A;  2OAI A;  5FXF A;  2VFT A;  2VFS A;  2UUV A;  2BVF A;  2W3S A;  4HG0 A;  3EJD B;  5I1W A;  1N5X A;  2Y4G A;  1W1R A;  3TSH A;  1FIQ B;  3PQB A;  3POP A;  1HSK A;  3RJA A;  1I19 A;  2Q4W A;  3GSY A;  2AXR A;  2UUU A;  4ML8 A;  3NVY B;  1W1O A;  4XLO A;  1W1M A;  5L6F A;  1QLT A;  1E8F A;  1F0X A;  1MBB A;  3RJ8 A;  2P13 A;  1UXY A;  1V97 A;  3BW7 A;  2O3G A;  5AE2 A;  3EUB 3;  2RK5 A;  1JRO A;  4PWB A;  1W1L A;  3NVW B; 
#chains in the Genus database with same CATH homology
 3VTE A;  3S1F A;  1FO4 A;  3DED A;  1ZXI C;  3FW8 A;  5FXE A;  2NQW A;  3HSU A;  1N60 C;  2PLS A;  1AHZ A;  5AE3 A;  1SB3 B;  2VFV A;  2P3H A;  4BC7 A;  1RM6 B;  3AM9 A;  4DNS A;  4EC3 A;  2R8D A;  3D2J A;  4PVH A;  3W8W A;  1WVE A;  1ZR6 A;  5ADZ A;  1DIQ A;  3JS8 A;  3B9J B;  1T3Q C;  4PZF A;  1N5W C;  3AMZ A;  4ZOH B;  4O95 A;  4PVJ A;  2I0K A;  2QPM A;  4MLA A;  2QKN A;  1JRP A;  1AHV A;  1W1S A;  3S1E A;  3TSJ A;  1N63 C;  3S1C A;  3W8X A;  3LLB A;  5D79 A;  4UD8 A;  3SR6 B;  4PVK A;  2R2Z A;  2BVH A;  3NVV B;  1E8H A;  3FWA A;  5AWV A;  1FFV C;  5FXD A;  2WDW A;  3I99 A;  2E3T A;  1WVF A;  4OAL A;  1VDV A;  3ETR B;  5K8E A;  1VAO A;  1FFU C;  2BVG A;  4JAY A;  5I1V A;  1MBT A;  5G5H B;  1DII A;  3HRD C;  3D2H A;  3AN1 A;  2Q85 A;  2IPI A;  1E8G A;  3FW7 A;  2PLI A;  5L6G A;  1W1Q A;  3C0P A;  2W54 A;  4PVE A;  2YVS A;  1DZN A;  2Y08 A;  3D2D A;  3DQ0 A;  2VFR A;  2W55 A;  4PYT A;  4JB1 A;  1E0Y A;  3NVZ B;  5HQX A;  3KJM A;  2Y3S A;  2VFU A;  2EXR A;  3NS1 B;  1W1K A;  2VAO A;  3FW9 A;  1AHU A;  4BBY A;  3TX1 A;  1N62 C;  4BCA A;  5G5G B;  1WYG A;  5HHZ A;  2GQU A;  1N61 C;  5AE1 A;  3NRZ B;  2P4P A;  3W8Z A;  2W3R A;  3S1D A;  4BC9 A;  4PWC A;  2Y3R A;  3LAE A;  5FXP A;  1W1J A;  1QLU A;  2GQT A;  5HMR A;  3PM9 A;  2MBR A;  2OAI A;  5FXF A;  2VFT A;  2VFS A;  2UUV A;  2BVF A;  2W3S A;  4HG0 A;  5I1W A;  1N5X A;  2Y4G A;  1W1R A;  3TSH A;  1FIQ B;  3PQB A;  3POP A;  1HSK A;  3RJA A;  1I19 A;  2Q4W A;  3GSY A;  2AXR A;  2UUU A;  4ML8 A;  3NVY B;  1W1O A;  4XLO A;  1W1M A;  5L6F A;  1QLT A;  1E8F A;  1F0X A;  1MBB A;  3RJ8 A;  2P13 A;  1UXY A;  1V97 A;  3BW7 A;  2O3G A;  5AE2 A;  3EUB 3;  2RK5 A;  1JRO A;  4PWB A;  1W1L A;  3NVW B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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