2BZWA

The crystal structure of bcl-xl in complex with full-length bad
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
195
structure length
144
Chain Sequence
SQSNRELVVDFLSYKLSQKGYSWSQFSDIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords APOPTOSIS REGULATOR BCL-X
publication title Structural and Biochemical Bases for the Inhibition of Autophagy and Apoptosis by Viral Bcl-2 of Murine Gamma-Herpesvirus 68.
pubmed doi rcsb
source organism Mus musculus
total genus 59
structure length 144
sequence length 195
ec nomenclature
pdb deposition date 2005-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
A PF02180 BH4 Bcl-2 homology region 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 2bzwA00
4OQ5A 2A5YA 2VOFA 4S0OA 4ZIEA 3WIXA 4S0PA 5JSBA 4WMRA 1BXLA 2IMTA 3MK8A 4BD8A 1PQ0A 1O0LA 2VOIA 5KTGA 1G5JA 4ZEQA 2JM6B 1ZY3A 3QBRA 4B4SA 4ZBIA 2ME8A 5FDRA 4ZBFA 3KZ0A 5KU9A 5FC4A 4QNQA 1F16A 1K3KA 1R2IA 2IMSA 1MAZA 3MQPA 5FDOA 3D7VA 5C6HA 1TY4A 1G5MA 1DDBA 3IHEA 2O22A 2JCNA 2XPXA 3IIHA 2VOGA 1YSGA 3DVUA 3ILCA 2O2NA 1Q59A 3CVAX 4YK9A 3PK1A 3KJ1A 4U2VA 2BIDA 3WIYA 5IEZA 3KJ0A 4U2UA 2VM6A 1LXLA 4YJ4A 1PQ1A 2O2MA 3IHCA 1YSWA 4MI8A 1R2HA 2W3LA 4K5BC 4BDUA 2KBWA 4ZIHA 2ROCA 2MHSA 1YSNA 3KJ2A 4BPIA 1R2EA 2B48A 4ZIIA 4QVXA 4ZIFA 4BD2A 2O21A 2V6QA 3I1HA 3IO9A 2WH6A 4BPJA 4G35A 2ABOA 5IF4A 3BL2A 2LR1A 3IHDA 2BZWA 4OYDA 3IIGA 1YSIA 2M5BA 2O2FA 4ZIGA 2KUAA 4HW2A 2NL9A 2PQKA 1OHUA 1R2GA 1GJHA 4BD6A 2RODA 4OQ6A 4HW4A 5C3FA 1AF3A 2K7WA 2XA0A 4BD7A 2MEJA 1R2DA 2YV6A 5FMIA 1WSXA 2NLAA 1MK3A 2VOHA 4HW3A
chains in the Genus database with same CATH superfamily
2I39A 4OQ5A 2A5YA 2VOFA 4S0OA 4ZIEA 3WIXA 4S0PA 5JSBA 4WMRA 1BXLA 2IMTA 3MK8A 4BD8A 1PQ0A 1O0LA 2VOIA 5KTGA 1G5JA 4ZEQA 2JM6B 1ZY3A 3QBRA 4B4SA 2VVWA 4ZBIA 2ME8A 5FDRA 4ZBFA 3KZ0A 5KU9A 4LQKA 5FC4A 4QNQA 4BBDA 2JBYA 1F16A 1K3KA 1R2IA 2IMSA 1MAZA 3MQPA 5FDOA 3D7VA 5C6HA 1TY4A 1G5MA 1DDBA 3IHEA 2O22A 2JCNA 2XPXA 3IIHA 2VOGA 1YSGA 3DVUA 3ILCA 2O2NA 1Q59A 3CVAX 4UF3A 4YK9A 3PK1A 3KJ1A 4U2VA 2BIDA 4D2MA 3WIYA 5IEZA 2VTYA 3KJ0A 4U2UA 2VM6A 1LXLA 4YJ4A 1PQ1A 2O2MA 3IHCA 1YSWA 4MI8A 1R2HA 2W3LA 2O42A 4D2LA 4K5BC 4BDUA 2JBXA 2KBWA 4ZIHA 4BBBA 2ROCA 2MHSA 1YSNA 3KJ2A 4BPIA 1R2EA 2B48A 2UXEA 4ZIIA 4QVXA 4ZIFA 4BD2A 2O21A 2V6QA 3I1HA 3IO9A 2WH6A 4BPJA 4G35A 2ABOA 5IF4A 3BL2A 2VVXA 2LR1A 3IHDA 2BZWA 4OYDA 3JRVA 2VVYA 3IIGA 1YSIA 4M0SA 2M5BA 2O2FA 4ZIGA 2KUAA 4HW2A 2NL9A 2PQKA 1OHUA 2K36A 1R2GA 4UF2A 1GJHA 4BD6A 2RODA 4OQ6A 4HW4A 5C3FA 1AF3A 2K7WA 2XA0A 4BD7A 2MEJA 4UF1A 1R2DA 4BBCA 2YV6A 5FMIA 1WSXA 2NLAA 1MK3A 2VOHA 4HW3A
chains in the Genus database with same CATH topology
4OQ5A 2A5YA 2VOFA 4S0OA 4ZIEA 3WIXA 4S0PA 5JSBA 4WMRA 1BXLA 2IMTA 3MK8A 4BD8A 1PQ0A 1O0LA 2VOIA 5KTGA 1G5JA 4ZEQA 2JM6B 1ZY3A 3QBRA 4B4SA 4ZBIA 2ME8A 5FDRA 4ZBFA 3KZ0A 5KU9A 5FC4A 4QNQA 1F16A 1K3KA 1R2IA 2IMSA 1MAZA 3MQPA 5FDOA 3D7VA 5C6HA 1TY4A 1G5MA 1DDBA 3IHEA 2O22A 2JCNA 2XPXA 3IIHA 2VOGA 1YSGA 3DVUA 3ILCA 2O2NA 1Q59A 3CVAX 4YK9A 3PK1A 3KJ1A 4U2VA 2BIDA 3WIYA 5IEZA 3KJ0A 4U2UA 2VM6A 1LXLA 4YJ4A 1PQ1A 2O2MA 3IHCA 1YSWA 4MI8A 1R2HA 2W3LA 4K5BC 4BDUA 2KBWA 4ZIHA 2ROCA 2MHSA 1YSNA 3KJ2A 4BPIA 1R2EA 2B48A 4ZIIA 4QVXA 4ZIFA 4BD2A 2O21A 2V6QA 3I1HA 3IO9A 2WH6A 4BPJA 4G35A 2ABOA 5IF4A 3BL2A 2LR1A 3IHDA 2BZWA 4OYDA 3IIGA 1YSIA 2M5BA 2O2FA 4ZIGA 2KUAA 4HW2A 2NL9A 2PQKA 1OHUA 1R2GA 1GJHA 4BD6A 2RODA 4OQ6A 4HW4A 5C3FA 1AF3A 2K7WA 2XA0A 4BD7A 2MEJA 1R2DA 2YV6A 5FMIA 1WSXA 2NLAA 1MK3A 2VOHA 4HW3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OQ5 A;  2A5Y A;  2VOF A;  4S0O A;  4ZIE A;  3WIX A;  4S0P A;  5JSB A;  4WMR A;  1BXL A;  2IMT A;  3MK8 A;  4BD8 A;  1PQ0 A;  1O0L A;  2VOI A;  5KTG A;  1G5J A;  4ZEQ A;  2JM6 B;  1ZY3 A;  3QBR A;  4B4S A;  4ZBI A;  2ME8 A;  5FDR A;  4ZBF A;  3KZ0 A;  5KU9 A;  5FC4 A;  4QNQ A;  1F16 A;  1K3K A;  1R2I A;  2IMS A;  1MAZ A;  3MQP A;  5FDO A;  3D7V A;  5C6H A;  1TY4 A;  1G5M A;  1DDB A;  3IHE A;  2O22 A;  2JCN A;  2XPX A;  3IIH A;  2VOG A;  1YSG A;  3DVU A;  3ILC A;  2O2N A;  1Q59 A;  3CVA X;  4YK9 A;  3PK1 A;  3KJ1 A;  4U2V A;  2BID A;  3WIY A;  5IEZ A;  3KJ0 A;  4U2U A;  2VM6 A;  1LXL A;  4YJ4 A;  1PQ1 A;  2O2M A;  3IHC A;  1YSW A;  4MI8 A;  1R2H A;  2W3L A;  4K5B C;  4BDU A;  2KBW A;  4ZIH A;  2ROC A;  2MHS A;  1YSN A;  3KJ2 A;  4BPI A;  1R2E A;  2B48 A;  4ZII A;  4QVX A;  4ZIF A;  4BD2 A;  2O21 A;  2V6Q A;  3I1H A;  3IO9 A;  2WH6 A;  4BPJ A;  4G35 A;  2ABO A;  5IF4 A;  3BL2 A;  2LR1 A;  3IHD A;  2BZW A;  4OYD A;  3IIG A;  1YSI A;  2M5B A;  2O2F A;  4ZIG A;  2KUA A;  4HW2 A;  2NL9 A;  2PQK A;  1OHU A;  1R2G A;  1GJH A;  4BD6 A;  2ROD A;  4OQ6 A;  4HW4 A;  5C3F A;  1AF3 A;  2K7W A;  2XA0 A;  4BD7 A;  2MEJ A;  1R2D A;  2YV6 A;  5FMI A;  1WSX A;  2NLA A;  1MK3 A;  2VOH A;  4HW3 A; 
#chains in the Genus database with same CATH topology
 2I39 A;  4OQ5 A;  2A5Y A;  2VOF A;  4S0O A;  4ZIE A;  3WIX A;  4S0P A;  5JSB A;  4WMR A;  1BXL A;  2IMT A;  3MK8 A;  4BD8 A;  1PQ0 A;  1O0L A;  2VOI A;  5KTG A;  1G5J A;  4ZEQ A;  2JM6 B;  1ZY3 A;  3QBR A;  4B4S A;  2VVW A;  4ZBI A;  2ME8 A;  5FDR A;  4ZBF A;  3KZ0 A;  5KU9 A;  4LQK A;  5FC4 A;  4QNQ A;  4BBD A;  2JBY A;  1F16 A;  1K3K A;  1R2I A;  2IMS A;  1MAZ A;  3MQP A;  5FDO A;  3D7V A;  5C6H A;  1TY4 A;  1G5M A;  1DDB A;  3IHE A;  2O22 A;  2JCN A;  2XPX A;  3IIH A;  2VOG A;  1YSG A;  3DVU A;  3ILC A;  2O2N A;  1Q59 A;  3CVA X;  4UF3 A;  4YK9 A;  3PK1 A;  3KJ1 A;  4U2V A;  2BID A;  4D2M A;  3WIY A;  5IEZ A;  2VTY A;  3KJ0 A;  4U2U A;  2VM6 A;  1LXL A;  4YJ4 A;  1PQ1 A;  2O2M A;  3IHC A;  1YSW A;  4MI8 A;  1R2H A;  2W3L A;  2O42 A;  4D2L A;  4K5B C;  4BDU A;  2JBX A;  2KBW A;  4ZIH A;  4BBB A;  2ROC A;  2MHS A;  1YSN A;  3KJ2 A;  4BPI A;  1R2E A;  2B48 A;  2UXE A;  4ZII A;  4QVX A;  4ZIF A;  4BD2 A;  2O21 A;  2V6Q A;  3I1H A;  3IO9 A;  2WH6 A;  4BPJ A;  4G35 A;  2ABO A;  5IF4 A;  3BL2 A;  2VVX A;  2LR1 A;  3IHD A;  2BZW A;  4OYD A;  3JRV A;  2VVY A;  3IIG A;  1YSI A;  4M0S A;  2M5B A;  2O2F A;  4ZIG A;  2KUA A;  4HW2 A;  2NL9 A;  2PQK A;  1OHU A;  2K36 A;  1R2G A;  4UF2 A;  1GJH A;  4BD6 A;  2ROD A;  4OQ6 A;  4HW4 A;  5C3F A;  1AF3 A;  2K7W A;  2XA0 A;  4BD7 A;  2MEJ A;  4UF1 A;  1R2D A;  4BBC A;  2YV6 A;  5FMI A;  1WSX A;  2NLA A;  1MK3 A;  2VOH A;  4HW3 A; 
#chains in the Genus database with same CATH homology
 4OQ5 A;  2A5Y A;  2VOF A;  4S0O A;  4ZIE A;  3WIX A;  4S0P A;  5JSB A;  4WMR A;  1BXL A;  2IMT A;  3MK8 A;  4BD8 A;  1PQ0 A;  1O0L A;  2VOI A;  5KTG A;  1G5J A;  4ZEQ A;  2JM6 B;  1ZY3 A;  3QBR A;  4B4S A;  4ZBI A;  2ME8 A;  5FDR A;  4ZBF A;  3KZ0 A;  5KU9 A;  5FC4 A;  4QNQ A;  1F16 A;  1K3K A;  1R2I A;  2IMS A;  1MAZ A;  3MQP A;  5FDO A;  3D7V A;  5C6H A;  1TY4 A;  1G5M A;  1DDB A;  3IHE A;  2O22 A;  2JCN A;  2XPX A;  3IIH A;  2VOG A;  1YSG A;  3DVU A;  3ILC A;  2O2N A;  1Q59 A;  3CVA X;  4YK9 A;  3PK1 A;  3KJ1 A;  4U2V A;  2BID A;  3WIY A;  5IEZ A;  3KJ0 A;  4U2U A;  2VM6 A;  1LXL A;  4YJ4 A;  1PQ1 A;  2O2M A;  3IHC A;  1YSW A;  4MI8 A;  1R2H A;  2W3L A;  4K5B C;  4BDU A;  2KBW A;  4ZIH A;  2ROC A;  2MHS A;  1YSN A;  3KJ2 A;  4BPI A;  1R2E A;  2B48 A;  4ZII A;  4QVX A;  4ZIF A;  4BD2 A;  2O21 A;  2V6Q A;  3I1H A;  3IO9 A;  2WH6 A;  4BPJ A;  4G35 A;  2ABO A;  5IF4 A;  3BL2 A;  2LR1 A;  3IHD A;  2BZW A;  4OYD A;  3IIG A;  1YSI A;  2M5B A;  2O2F A;  4ZIG A;  2KUA A;  4HW2 A;  2NL9 A;  2PQK A;  1OHU A;  1R2G A;  1GJH A;  4BD6 A;  2ROD A;  4OQ6 A;  4HW4 A;  5C3F A;  1AF3 A;  2K7W A;  2XA0 A;  4BD7 A;  2MEJ A;  1R2D A;  2YV6 A;  5FMI A;  1WSX A;  2NLA A;  1MK3 A;  2VOH A;  4HW3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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