2CAZB

Escrt-i core
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
100
structure length
100
Chain Sequence
PLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRLERGIPIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords SUPPRESSOR PROTEIN STP22 OF TEMPERATURE-SENSITIVE ALPHA-FACT
publication title Escrt-I Core and Escrt-II Glue Domain Structures Reveal Role for Glue in Linking to Escrt-I and Membranes.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 32
structure length 100
sequence length 100
chains with identical sequence E
ec nomenclature
pdb deposition date 2005-12-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.200 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2cazB00
2F6MB 2P22B 2F66B 2CAZB
chains in the Genus database with same CATH superfamily
3FVVA 3FBVA 4YZCA 4DWLA 3B55A 2XTRA 3FNBA 3DA3A 2GSCA 2FEFA 4OAVB 2V1CC 4AS2A 2F66B 4YZ9A 4YZDA 3I9V1 1YO7A 3F4MA 2QGMA 2JB2A 5HGIA 3LJ2A 1JQOA 2K19A 2BL8A 2A2CA 2L1LB 2KKMA 3Q8DA 2JAEA 2RADA 3DO9A 4HFVA 4PL3A 3VA9A 1W3SA 4O1PA 3DA4A 4G75A 4I1TA 4G76A 2F6MB 3LJ0A 3L0IA 1SJ8A 2YFAA 2FU2A 3IAS1 2RIOA 3JSBA 4GXTA 4JCVE 2FUG1 2JB3A 2A2DA 4Z7GA 2V6EA 2ZRRA 3KP9A 2MJFB 2JBWA 4U6RA 3UITA 4AS3A 4OAUC 2XMXA 5LNK1 3P23A 2ETDA 4NV5A 2QZGA 2P22B 4PL4A 1U5KA 3SDJA 4O1OA 3LJ1A 3AJFA 2HGKA 2QSBA 2XTQA 4NV2A 4HEA1 2JB1A 1TDPA 2IP6A 4PL5A 4Z7HA 4Q9VA 2RLDA 2CAZB 2ZW3A 2YFBA 2E8GA 3IAM1 2BL7A
chains in the Genus database with same CATH topology
3FBVA 4YZCA 4DWLA 2XTRA 3DA3A 4OAVB 4AS2A 2V1CC 2F66B 4YZ9A 4YZDA 3I9V1 1YO7A 3F4MA 2JB2A 5HGIA 3LJ2A 2K19A 2A2CA 2L1LB 2KKMA 3Q8DA 2JAEA 3DO9A 4HFVA 4PL3A 3VA9A 1W3SA 4O1PA 3DA4A 4G75A 4I1TA 4G76A 2F6MB 3LJ0A 3L0IA 1SJ8A 2YFAA 3IAS1 2RIOA 3JSBA 4GXTA 4JCVE 2FUG1 2JB3A 2A2DA 4Z7GA 2V6EA 2ZRRA 3KP9A 2MJFB 4U6RA 3UITA 4AS3A 4OAUC 2XMXA 5LNK1 3P23A 4PL4A 4NV5A 2P22B 1U5KA 3SDJA 4O1OA 3LJ1A 3AJFA 2XTQA 4NV2A 4HEA1 2JB1A 2IP6A 4PL5A 4Z7HA 4Q9VA 2CAZB 2YFBA 2E8GA 3IAM1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F6M B;  2P22 B;  2F66 B;  2CAZ B; 
#chains in the Genus database with same CATH topology
 3FVV A;  3FBV A;  4YZC A;  4DWL A;  3B55 A;  2XTR A;  3FNB A;  3DA3 A;  2GSC A;  2FEF A;  4OAV B;  2V1C C;  4AS2 A;  2F66 B;  4YZ9 A;  4YZD A;  3I9V 1;  1YO7 A;  3F4M A;  2QGM A;  2JB2 A;  5HGI A;  3LJ2 A;  1JQO A;  2K19 A;  2BL8 A;  2A2C A;  2L1L B;  2KKM A;  3Q8D A;  2JAE A;  2RAD A;  3DO9 A;  4HFV A;  4PL3 A;  3VA9 A;  1W3S A;  4O1P A;  3DA4 A;  4G75 A;  4I1T A;  4G76 A;  2F6M B;  3LJ0 A;  3L0I A;  1SJ8 A;  2YFA A;  2FU2 A;  3IAS 1;  2RIO A;  3JSB A;  4GXT A;  4JCV E;  2FUG 1;  2JB3 A;  2A2D A;  4Z7G A;  2V6E A;  2ZRR A;  3KP9 A;  2MJF B;  2JBW A;  4U6R A;  3UIT A;  4AS3 A;  4OAU C;  2XMX A;  5LNK 1;  3P23 A;  2ETD A;  4NV5 A;  2QZG A;  2P22 B;  4PL4 A;  1U5K A;  3SDJ A;  4O1O A;  3LJ1 A;  3AJF A;  2HGK A;  2QSB A;  2XTQ A;  4NV2 A;  4HEA 1;  2JB1 A;  1TDP A;  2IP6 A;  4PL5 A;  4Z7H A;  4Q9V A;  2RLD A;  2CAZ B;  2ZW3 A;  2YFB A;  2E8G A;  3IAM 1;  2BL7 A; 
#chains in the Genus database with same CATH homology
 3FBV A;  4YZC A;  4DWL A;  2XTR A;  3DA3 A;  4OAV B;  4AS2 A;  2V1C C;  2F66 B;  4YZ9 A;  4YZD A;  3I9V 1;  1YO7 A;  3F4M A;  2JB2 A;  5HGI A;  3LJ2 A;  2K19 A;  2A2C A;  2L1L B;  2KKM A;  3Q8D A;  2JAE A;  3DO9 A;  4HFV A;  4PL3 A;  3VA9 A;  1W3S A;  4O1P A;  3DA4 A;  4G75 A;  4I1T A;  4G76 A;  2F6M B;  3LJ0 A;  3L0I A;  1SJ8 A;  2YFA A;  3IAS 1;  2RIO A;  3JSB A;  4GXT A;  4JCV E;  2FUG 1;  2JB3 A;  2A2D A;  4Z7G A;  2V6E A;  2ZRR A;  3KP9 A;  2MJF B;  4U6R A;  3UIT A;  4AS3 A;  4OAU C;  2XMX A;  5LNK 1;  3P23 A;  4PL4 A;  4NV5 A;  2P22 B;  1U5K A;  3SDJ A;  4O1O A;  3LJ1 A;  3AJF A;  2XTQ A;  4NV2 A;  4HEA 1;  2JB1 A;  2IP6 A;  4PL5 A;  4Z7H A;  4Q9V A;  2CAZ B;  2YFB A;  2E8G A;  3IAM 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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