2CC8A

Complexes of dodecin with flavin and flavin-like ligands
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
64
structure length
64
Chain Sequence
VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAVEERTYQTEVQVAFELD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Flavoprotein
molecule keywords VNG1446H
publication title Dodecins: A Family of Lumichrome Binding Proteins.
pubmed doi rcsb
source organism Halobacterium salinarum
total genus 13
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2006-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07311 Dodecin Dodecin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1660.10 Alpha Beta 2-Layer Sandwich Dodecin subunit-like Flavin-binding protein dodecin 2cc8A00
2MA8A 2VX9A 2V19A 2CC7A 2UX9A 2VXAA 2YJ0A 2V21A 4B2JA 2VYXA 2CC9A 2CC8A 2NOCA 3OQTA 2VKGA 2MA4A 2YIZA 3ONRA 2CJCA 1MOGA 2CZ8A 2JNAA 2CCCA 4EVUA 2V18A 2VKFA 2DEVA 2DEGA 2DEHA 2CC6A 4B2MA 4B2KA 2CIEA 4B2HA 2CCBA 2M2JA 2CIFA
chains in the Genus database with same CATH superfamily
2MA8A 2VX9A 2V19A 2CC7A 2UX9A 1RH7A 2JZ7A 2VXAA 2YJ0A 2V21A 4B2JA 2VYXA 2CC9A 2CC8A 2NOCA 3OQTA 2VKGA 2MA4A 2YIZA 3ONRA 2CJCA 1MOGA 2CZ8A 2JNAA 2CCCA 4EVUA 3W1EA 2V18A 2VKFA 2DEVA 2DEGA 1RGXA 2DEHA 2CC6A 4B2MA 1RFXA 4B2KA 2CIEA 4B2HA 2CCBA 2M2JA 2CIFA
chains in the Genus database with same CATH topology
2MA8A 2VX9A 2V19A 2CC7A 2UX9A 2VXAA 2YJ0A 2V21A 4B2JA 2VYXA 2CC9A 2CC8A 2NOCA 3OQTA 2VKGA 2MA4A 2YIZA 3ONRA 2CJCA 1MOGA 2CZ8A 2JNAA 2CCCA 4EVUA 2V18A 2VKFA 2DEVA 2DEGA 2DEHA 2CC6A 4B2MA 4B2KA 2CIEA 4B2HA 2CCBA 2M2JA 2CIFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MA8 A;  2VX9 A;  2V19 A;  2CC7 A;  2UX9 A;  2VXA A;  2YJ0 A;  2V21 A;  4B2J A;  2VYX A;  2CC9 A;  2CC8 A;  2NOC A;  3OQT A;  2VKG A;  2MA4 A;  2YIZ A;  3ONR A;  2CJC A;  1MOG A;  2CZ8 A;  2JNA A;  2CCC A;  4EVU A;  2V18 A;  2VKF A;  2DEV A;  2DEG A;  2DEH A;  2CC6 A;  4B2M A;  4B2K A;  2CIE A;  4B2H A;  2CCB A;  2M2J A;  2CIF A; 
#chains in the Genus database with same CATH topology
 2MA8 A;  2VX9 A;  2V19 A;  2CC7 A;  2UX9 A;  1RH7 A;  2JZ7 A;  2VXA A;  2YJ0 A;  2V21 A;  4B2J A;  2VYX A;  2CC9 A;  2CC8 A;  2NOC A;  3OQT A;  2VKG A;  2MA4 A;  2YIZ A;  3ONR A;  2CJC A;  1MOG A;  2CZ8 A;  2JNA A;  2CCC A;  4EVU A;  3W1E A;  2V18 A;  2VKF A;  2DEV A;  2DEG A;  1RGX A;  2DEH A;  2CC6 A;  4B2M A;  1RFX A;  4B2K A;  2CIE A;  4B2H A;  2CCB A;  2M2J A;  2CIF A; 
#chains in the Genus database with same CATH homology
 2MA8 A;  2VX9 A;  2V19 A;  2CC7 A;  2UX9 A;  2VXA A;  2YJ0 A;  2V21 A;  4B2J A;  2VYX A;  2CC9 A;  2CC8 A;  2NOC A;  3OQT A;  2VKG A;  2MA4 A;  2YIZ A;  3ONR A;  2CJC A;  1MOG A;  2CZ8 A;  2JNA A;  2CCC A;  4EVU A;  2V18 A;  2VKF A;  2DEV A;  2DEG A;  2DEH A;  2CC6 A;  4B2M A;  4B2K A;  2CIE A;  4B2H A;  2CCB A;  2M2J A;  2CIF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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