2CFHC

Structure of the bet3-tpc6b core of trapp
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
156
structure length
149
Chain Sequence
ADEALFLLLHNEMVSGVYKSAEQGEVENGRITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport
molecule keywords TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3
publication title Structure of the Bet3-Tpc6B Core of Trapp: Two Tpc6 Paralogs Form Trimeric Complexes with Bet3 and Mum2.
pubmed doi rcsb
source organism Homo sapiens
total genus 47
structure length 149
sequence length 156
chains with identical sequence D
ec nomenclature
pdb deposition date 2006-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Trafficking protein particle complex subunit 3 2cfhC00
2OSOA 1WC8A 2C0JA 3CUED 2C0JB 2PWNA 2J3WB 2J3RA 2CFHA 2J3RB 3KXCC 3NJCA 3CUEB 1WC9A 2J3TA 2BJNA 2J3TB 1SZ7A 2OSDA 3KXCA 2J3WD 2CFHC
chains in the Genus database with same CATH superfamily
3HO5H 3N1OA 2OSOA 1R44A 3M1NA 4D0YA 2WFRA 1WC8A 2IBGE 2C0JA 3CUED 3N1MB 3K7HB 3D1MA 2C0JB 4OAKA 4F78A 2PWNA 3N1RA 1U10A 2J3WB 2WG4A 3N1PB 4JIDA 4MPHA 2J3RA 2CFHA 3N1FA 2J3RB 4NT9A 5HNMA 3K7IB 2WFQA 1LBUA 3KXCC 3NJCA 3K7GB 3CUEB 3N1QA 1WC9A 4OXDA 4OX3A 1VHHA 2J3TA 4C4MA 2BJNA 4MUTA 2J3TB 2VO9A 3N1GA 4C4NA 2WG3A 3K7JB 4MURA 4MUQA 3MXWA 1SZ7A 2OSDA 1TZPA 2J3WD 3KXCA 4OX5A 4MUSA 2CFHC 2WFXA
chains in the Genus database with same CATH topology
2OSOA 1WC8A 2C0JA 3CUED 2C0JB 2PWNA 2J3WB 2J3RA 2CFHA 2J3RB 3KXCC 3NJCA 3CUEB 1WC9A 2J3TA 2BJNA 2J3TB 1SZ7A 2OSDA 3KXCA 2J3WD 2CFHC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OSO A;  1WC8 A;  2C0J A;  3CUE D;  2C0J B;  2PWN A;  2J3W B;  2J3R A;  2CFH A;  2J3R B;  3KXC C;  3NJC A;  3CUE B;  1WC9 A;  2J3T A;  2BJN A;  2J3T B;  1SZ7 A;  2OSD A;  3KXC A;  2J3W D;  2CFH C; 
#chains in the Genus database with same CATH topology
 3HO5 H;  3N1O A;  2OSO A;  1R44 A;  3M1N A;  4D0Y A;  2WFR A;  1WC8 A;  2IBG E;  2C0J A;  3CUE D;  3N1M B;  3K7H B;  3D1M A;  2C0J B;  4OAK A;  4F78 A;  2PWN A;  3N1R A;  1U10 A;  2J3W B;  2WG4 A;  3N1P B;  4JID A;  4MPH A;  2J3R A;  2CFH A;  3N1F A;  2J3R B;  4NT9 A;  5HNM A;  3K7I B;  2WFQ A;  1LBU A;  3KXC C;  3NJC A;  3K7G B;  3CUE B;  3N1Q A;  1WC9 A;  4OXD A;  4OX3 A;  1VHH A;  2J3T A;  4C4M A;  2BJN A;  4MUT A;  2J3T B;  2VO9 A;  3N1G A;  4C4N A;  2WG3 A;  3K7J B;  4MUR A;  4MUQ A;  3MXW A;  1SZ7 A;  2OSD A;  1TZP A;  2J3W D;  3KXC A;  4OX5 A;  4MUS A;  2CFH C;  2WFX A; 
#chains in the Genus database with same CATH homology
 2OSO A;  1WC8 A;  2C0J A;  3CUE D;  2C0J B;  2PWN A;  2J3W B;  2J3R A;  2CFH A;  2J3R B;  3KXC C;  3NJC A;  3CUE B;  1WC9 A;  2J3T A;  2BJN A;  2J3T B;  1SZ7 A;  2OSD A;  3KXC A;  2J3W D;  2CFH C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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