2CI5A

Crystal structure of dimethylarginine dimethylaminohydrolase i in complex with l-homocysteine
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
272
structure length
272
Chain Sequence
FGRATHVVVRALPESLAQQALRRTKGDEVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEADMMKEALEKLQLNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVVDALHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSNSELEKVDGLLTCSSVLINK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords NG, NG-DIMETHYLARGININE DIMETHYLAMINOHYDROLASE 1
publication title Structure of the Mammalian Nos Regulator Dimethylarginine Dimethylaminohydrolase: A Basis for the Design of Specific Inbitors
pubmed doi rcsb
total genus 89
structure length 272
sequence length 272
chains with identical sequence B
ec nomenclature ec 3.5.3.18: Dimethylargininase.
pdb deposition date 2006-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02274 Amidinotransf Amidinotransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 2ci5A00
4N2BA 4N2AA 2JAIA 4YTGA 2CI4A 4N2IA 4N2DA 5AK7A 2JAJA 4N2LA 3APMA 2A9GA 1JDWA 2JDXA 4N24A 4N2KA 6JDWA 2CI6A 1BWDA 1XKNA 2DEYX 2CI1A 4N2CA 1WD9A 1G62A 4BOFA 2CMUA 2DEWX 1WD8A 3B1TA 5AN9I 2JERA 5AK8A 2CI5A 1WDAA 3P8PA 3APNA 3I2EA 4E4JA 4N2FA 4N2GA 3RHYA 2AAFA 2CI3A 4N2MA 3JDWA 3BPBA 3H7KA 4YTBA 1LXYA 4N28A 5HP5A 3B1UA 4N25A 2C6ZA 4YT9A 3H7CX 4N2HA 5JDWA 1ZBRA 2Q3UA 5M3QA 4DKTA 3P8EA 4X8GA 2EWOA 3HVMA 4N2EA 1JDXA 4X8CA 8JDWA 9JDWA 1H70A 2ABRA 2CI7A 2ACIA 1S9RA 4N2NA 1VKPA 2DEXX 2DW5A 1RXXA 1G61A 4N20A 4N22A 3I4AA 4JDWA 2JDWA 4N26A 7JDWA
chains in the Genus database with same CATH superfamily
4N2BA 4N2AA 2JAIA 1YNIA 4YTGA 2CI4A 4N2IA 4N2DA 5AK7A 2JAJA 4N2LA 3APMA 2A9GA 1JDWA 2JDXA 4N24A 4N2KA 6JDWA 2CI6A 1BWDA 1XKNA 2DEYX 2CI1A 4N2CA 1WD9A 1G62A 4BOFA 2CMUA 2DEWX 1WD8A 3B1TA 5AN9I 2JERA 5AK8A 2CI5A 1WDAA 3P8PA 3APNA 3I2EA 4E4JA 4N2FA 4N2GA 3RHYA 1YNFA 2AAFA 2CI3A 4N2MA 3JDWA 3BPBA 3H7KA 4YTBA 1LXYA 4N28A 5HP5A 3B1UA 4N25A 2C6ZA 4YT9A 3H7CX 4N2HA 5JDWA 1ZBRA 2Q3UA 5M3QA 4DKTA 3P8EA 4X8GA 2EWOA 1YNHA 3HVMA 4N2EA 1JDXA 4X8CA 8JDWA 9JDWA 1H70A 2ABRA 2CI7A 2ACIA 1S9RA 4N2NA 1VKPA 2DEXX 2DW5A 1RXXA 1G61A 4N20A 4N22A 3I4AA 4JDWA 2JDWA 4N26A 7JDWA
chains in the Genus database with same CATH topology
4N2BA 4N2AA 2JAIA 4YTGA 2CI4A 4N2IA 4N2DA 5AK7A 2JAJA 4N2LA 3APMA 2A9GA 1JDWA 2JDXA 4N24A 4N2KA 6JDWA 2CI6A 1BWDA 1XKNA 2DEYX 2CI1A 4N2CA 1WD9A 1G62A 4BOFA 2CMUA 2DEWX 1WD8A 3B1TA 5AN9I 2JERA 5AK8A 2CI5A 1WDAA 3P8PA 3APNA 3I2EA 4E4JA 4N2FA 4N2GA 3RHYA 2AAFA 2CI3A 4N2MA 3JDWA 3BPBA 3H7KA 4YTBA 1LXYA 4N28A 5HP5A 3B1UA 4N25A 2C6ZA 4YT9A 3H7CX 4N2HA 5JDWA 1ZBRA 2Q3UA 5M3QA 4DKTA 3P8EA 4X8GA 2EWOA 3HVMA 4N2EA 1JDXA 4X8CA 8JDWA 9JDWA 1H70A 2ABRA 2CI7A 2ACIA 1S9RA 4N2NA 1VKPA 2DEXX 2DW5A 1RXXA 1G61A 4N20A 4N22A 3I4AA 4JDWA 2JDWA 4N26A 7JDWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N2B A;  4N2A A;  2JAI A;  4YTG A;  2CI4 A;  4N2I A;  4N2D A;  5AK7 A;  2JAJ A;  4N2L A;  3APM A;  2A9G A;  1JDW A;  2JDX A;  4N24 A;  4N2K A;  6JDW A;  2CI6 A;  1BWD A;  1XKN A;  2DEY X;  2CI1 A;  4N2C A;  1WD9 A;  1G62 A;  4BOF A;  2CMU A;  2DEW X;  1WD8 A;  3B1T A;  5AN9 I;  2JER A;  5AK8 A;  2CI5 A;  1WDA A;  3P8P A;  3APN A;  3I2E A;  4E4J A;  4N2F A;  4N2G A;  3RHY A;  2AAF A;  2CI3 A;  4N2M A;  3JDW A;  3BPB A;  3H7K A;  4YTB A;  1LXY A;  4N28 A;  5HP5 A;  3B1U A;  4N25 A;  2C6Z A;  4YT9 A;  3H7C X;  4N2H A;  5JDW A;  1ZBR A;  2Q3U A;  5M3Q A;  4DKT A;  3P8E A;  4X8G A;  2EWO A;  3HVM A;  4N2E A;  1JDX A;  4X8C A;  8JDW A;  9JDW A;  1H70 A;  2ABR A;  2CI7 A;  2ACI A;  1S9R A;  4N2N A;  1VKP A;  2DEX X;  2DW5 A;  1RXX A;  1G61 A;  4N20 A;  4N22 A;  3I4A A;  4JDW A;  2JDW A;  4N26 A;  7JDW A; 
#chains in the Genus database with same CATH topology
 4N2B A;  4N2A A;  2JAI A;  1YNI A;  4YTG A;  2CI4 A;  4N2I A;  4N2D A;  5AK7 A;  2JAJ A;  4N2L A;  3APM A;  2A9G A;  1JDW A;  2JDX A;  4N24 A;  4N2K A;  6JDW A;  2CI6 A;  1BWD A;  1XKN A;  2DEY X;  2CI1 A;  4N2C A;  1WD9 A;  1G62 A;  4BOF A;  2CMU A;  2DEW X;  1WD8 A;  3B1T A;  5AN9 I;  2JER A;  5AK8 A;  2CI5 A;  1WDA A;  3P8P A;  3APN A;  3I2E A;  4E4J A;  4N2F A;  4N2G A;  3RHY A;  1YNF A;  2AAF A;  2CI3 A;  4N2M A;  3JDW A;  3BPB A;  3H7K A;  4YTB A;  1LXY A;  4N28 A;  5HP5 A;  3B1U A;  4N25 A;  2C6Z A;  4YT9 A;  3H7C X;  4N2H A;  5JDW A;  1ZBR A;  2Q3U A;  5M3Q A;  4DKT A;  3P8E A;  4X8G A;  2EWO A;  1YNH A;  3HVM A;  4N2E A;  1JDX A;  4X8C A;  8JDW A;  9JDW A;  1H70 A;  2ABR A;  2CI7 A;  2ACI A;  1S9R A;  4N2N A;  1VKP A;  2DEX X;  2DW5 A;  1RXX A;  1G61 A;  4N20 A;  4N22 A;  3I4A A;  4JDW A;  2JDW A;  4N26 A;  7JDW A; 
#chains in the Genus database with same CATH homology
 4N2B A;  4N2A A;  2JAI A;  4YTG A;  2CI4 A;  4N2I A;  4N2D A;  5AK7 A;  2JAJ A;  4N2L A;  3APM A;  2A9G A;  1JDW A;  2JDX A;  4N24 A;  4N2K A;  6JDW A;  2CI6 A;  1BWD A;  1XKN A;  2DEY X;  2CI1 A;  4N2C A;  1WD9 A;  1G62 A;  4BOF A;  2CMU A;  2DEW X;  1WD8 A;  3B1T A;  5AN9 I;  2JER A;  5AK8 A;  2CI5 A;  1WDA A;  3P8P A;  3APN A;  3I2E A;  4E4J A;  4N2F A;  4N2G A;  3RHY A;  2AAF A;  2CI3 A;  4N2M A;  3JDW A;  3BPB A;  3H7K A;  4YTB A;  1LXY A;  4N28 A;  5HP5 A;  3B1U A;  4N25 A;  2C6Z A;  4YT9 A;  3H7C X;  4N2H A;  5JDW A;  1ZBR A;  2Q3U A;  5M3Q A;  4DKT A;  3P8E A;  4X8G A;  2EWO A;  3HVM A;  4N2E A;  1JDX A;  4X8C A;  8JDW A;  9JDW A;  1H70 A;  2ABR A;  2CI7 A;  2ACI A;  1S9R A;  4N2N A;  1VKP A;  2DEX X;  2DW5 A;  1RXX A;  1G61 A;  4N20 A;  4N22 A;  3I4A A;  4JDW A;  2JDW A;  4N26 A;  7JDW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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