2CKFA

Crystal structure of the terminal component of the pah-hydroxylating dioxygenase from sphingomonas sp chy-1
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
452
structure length
448
Chain Sequence
b'MSGDTTLVDTVNASQSRQVFWDRDVYDLEIERIFSRAWLMLGHKSLLPKPGDFITTYMAEDKIILSHQSDGTFRAFINSCTHRGNQICHADSGNAKAFVCNYHGWVYGQDGSLVDVPLESRCYHNKLDKQELAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRFYLDTIWEGGGAGLELLGPPMKSLLHCNWKVPVENFVGDGYHVGWTHAAALGQIGGPLAGLAGNRADDLGLQFTTRHGHGFGVIDNAAAAIHRKGDGWNKYLEDTRGEVRRKFGADRERLYVGHWNGAIFPNCSFLYGTNTFKIWHPRGPHEIEVWTYTMVPSDADPATKSAIQREATRTFGTAGTLESDDGENMSSATYVNRGVITRDGMMNSTMGVGYEGPHPVYPGIVGISFIGETSYRGFYRFWKEMIDAPDWASVKANDDNWDSVFTNRNFWNEKLNA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords RING-HYDROXYLATING DIOXYGENASE ALPHA SUBUNIT
publication title The Catalytic Pocket of the Ring-Hydroxylating Dioxygenase from Sphingomonas Chy-1.
pubmed doi rcsb
source organism Sphingomonas sp.
molecule tags Oxidoreductase
total genus 141
structure length 448
sequence length 452
chains with identical sequence C, E
ec nomenclature
pdb deposition date 2006-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2ckfA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2ckfA01
2CKFA 3VCPA 1BE3E 1NDOA 2E75D 1ULJA 4P1BH 3GCFA 1WQLA 4NBFA 3H1IE 3GOBA 2XR8A 3L70E 3VMGA 1KB9E 4PD4E 3DQYA 2NWFA 4QUPA 4HM7A 1SQXE 3L75E 3VCAA 4HM3A 4NBEA 2HMOA 1SJGA 2HMJA 2JZAA 4QDFA 1WW9A 2QJKC 1RIEA 3GL2A 3VMIA 2B1XA 1FQTA 2DE7A 1VCKA 4NBBA 3TGUE 4QUQA 4EMJB 1L0LE 1O7WA 1NYKA 2FYUE 3CX5E 3H1LE 3N0QA 2E76D 1ULIA 2FYNC 2BMOA 4NBDA 4QDDA 3CWBE 1O7PA 1Q90C 1NU1E 1EG9A 2HMNA 2E74D 2ZYLA 4NBGA 1NTME 4NB8D 4QDCA 3GTSA 4HM2A 4QURA 2QJPC 2NVGA 2DE5A 3H1JE 3VMHD 3GCEA 3VMID 4NBAA 2BCCE 3L72E 3L71E 3AZCA 3C0DA 4NBCA 4NB9D 2YVJB 3H1KE 4HM8A 2GBXA 4H13D 4AAYB 1SQBE 2JO6A 2A06E 5HL4A 4QCKA 4NB8A 2Q3WA 3VMHA 1UUWA 4HM4A 2HMKA 4NBHD 2YFIA 3FOUA 1O7NA 1SQVE 2I7FA 3GKEA 3GZXA 1SQQE 3GL0A 5AEUA 4AIVA 3L74E 1EZVE 2NVEA 4OGQD 1Z01A 4NBFD 1G8JB 2E4PA 1L0NE 2QPZA 4H0LD 2B24A 4H44D 4U3FE 1SQPE 2QJYC 4NBHA 4NBED 1NTZE 1UUVA 1Z02A 1KYOE 5BOKA 1ZRTE 1P84E 2D2CD 2NUMA 2NUKA 2YFLA 5AEWA 3EN1A 2ZT9D 2HMLA 3CXHE 3EQQA 5KLVE 1BCCE 1PPJE 2NVFA 1VF5D 2BMQA 4HJLA 4NBBD 1NTKE 5KLIC 1O7GA 3GZYA 3GB4A 3L73E 2DE6D 4NB9A 2HMMA 3BCCE 3H1HE 4NBDD 2GBWA 3GKQA 4HM6A 3D89A 4HKVA 2IBZE 4NBGD 2YIUC 3GTEA 4P1CH 2E4QA 2XRXA 1VM9A 2BMRA 1PP9E 2DE5D 4HM1A 3VMGD 1Z03A 1G8KB 4QDFB 4NBAD 5CXMA 1RFSA 5KKZC 1O7HA 4HM5A 4PV1D 2XSHA 4NBCD 2DE6A 1JM1A 2YFJA 4HM0A 2XSOA 2DE7D 1O7MA
chains in the Genus database with same CATH superfamily
2CKFA 3VCPA 1BE3E 1NDOA 2E75D 1ULJA 4P1BH 3GCFA 1WQLA 4NBFA 3H1IE 3GOBA 2XR8A 3L70E 3VMGA 1KB9E 4PD4E 3DQYA 2NWFA 4QUPA 4HM7A 1SQXE 3L75E 3VCAA 4HM3A 4NBEA 2HMOA 1SJGA 2HMJA 2JZAA 4QDFA 1WW9A 2QJKC 1RIEA 3GL2A 3VMIA 2B1XA 1FQTA 2DE7A 1VCKA 4NBBA 3TGUE 4QUQA 4EMJB 1L0LE 1O7WA 1NYKA 2FYUE 3CX5E 3H1LE 3N0QA 2E76D 1ULIA 2FYNC 2BMOA 4NBDA 4QDDA 3CWBE 1O7PA 1Q90C 1NU1E 1EG9A 2HMNA 2E74D 2ZYLA 4NBGA 1NTME 4NB8D 4QDCA 3GTSA 4HM2A 4QURA 2QJPC 2NVGA 2DE5A 3H1JE 3VMHD 3GCEA 3VMID 4NBAA 2BCCE 3L72E 3L71E 3AZCA 3C0DA 4NBCA 4NB9D 2YVJB 3H1KE 4HM8A 2GBXA 4H13D 4AAYB 1SQBE 2JO6A 2A06E 5HL4A 4QCKA 4NB8A 2Q3WA 3VMHA 1UUWA 4HM4A 2HMKA 4NBHD 2YFIA 3FOUA 1O7NA 1SQVE 2I7FA 3GKEA 3GZXA 1SQQE 3GL0A 5AEUA 4AIVA 3L74E 1EZVE 2NVEA 4OGQD 1Z01A 4NBFD 1G8JB 2E4PA 1L0NE 2QPZA 4H0LD 2B24A 4H44D 4U3FE 1SQPE 2QJYC 4NBHA 4NBED 1NTZE 1UUVA 1Z02A 1KYOE 5BOKA 1ZRTE 1P84E 2D2CD 2NUMA 2NUKA 2YFLA 5AEWA 3EN1A 2ZT9D 2HMLA 3CXHE 3EQQA 5KLVE 1BCCE 1PPJE 2NVFA 1VF5D 2BMQA 4HJLA 4NBBD 1NTKE 5KLIC 1O7GA 3GZYA 3GB4A 3L73E 2DE6D 4NB9A 2HMMA 3BCCE 3H1HE 4NBDD 2GBWA 3GKQA 4HM6A 3D89A 4HKVA 2IBZE 4NBGD 2YIUC 3GTEA 4P1CH 2E4QA 2XRXA 1VM9A 2BMRA 1PP9E 2DE5D 4HM1A 3VMGD 1Z03A 1G8KB 4QDFB 4NBAD 5CXMA 1RFSA 5KKZC 1O7HA 4HM5A 4PV1D 2XSHA 4NBCD 2DE6A 1JM1A 2YFJA 4HM0A 2XSOA 2DE7D 1O7MA
chains in the Genus database with same CATH topology
2CKFA 3VCPA 1BE3E 1NDOA 2E75D 1ULJA 4P1BH 3GCFA 1WQLA 4NBFA 3H1IE 3GOBA 2XR8A 3L70E 3VMGA 1KB9E 4PD4E 3DQYA 2NWFA 4QUPA 4HM7A 1SQXE 3L75E 3VCAA 4HM3A 4NBEA 2HMOA 1SJGA 2HMJA 2JZAA 4QDFA 1WW9A 2QJKC 1RIEA 3GL2A 3VMIA 2B1XA 1FQTA 2DE7A 1VCKA 4NBBA 3TGUE 4QUQA 4EMJB 1L0LE 1O7WA 1NYKA 2FYUE 3CX5E 3H1LE 3N0QA 2E76D 1ULIA 2FYNC 2BMOA 4NBDA 4QDDA 3CWBE 1O7PA 1Q90C 1NU1E 1EG9A 2HMNA 2E74D 2ZYLA 4NBGA 1NTME 4NB8D 4QDCA 3GTSA 4HM2A 4QURA 2QJPC 2NVGA 2DE5A 3H1JE 3VMHD 3GCEA 3VMID 4NBAA 2BCCE 3L72E 3L71E 3AZCA 3C0DA 4NBCA 4NB9D 2YVJB 3H1KE 4HM8A 2GBXA 4H13D 4AAYB 1SQBE 2JO6A 2A06E 5HL4A 4QCKA 4NB8A 2Q3WA 3VMHA 1UUWA 4HM4A 2HMKA 4NBHD 2YFIA 3FOUA 1O7NA 1SQVE 2I7FA 3GKEA 3GZXA 1SQQE 3GL0A 5AEUA 4AIVA 3L74E 1EZVE 2NVEA 4OGQD 1Z01A 4NBFD 1G8JB 2E4PA 1L0NE 2QPZA 4H0LD 2B24A 4H44D 4U3FE 1SQPE 2QJYC 4NBHA 4NBED 1NTZE 1UUVA 1Z02A 1KYOE 5BOKA 1ZRTE 1P84E 2D2CD 2NUMA 2NUKA 2YFLA 5AEWA 3EN1A 2ZT9D 2HMLA 3CXHE 3EQQA 5KLVE 1BCCE 1PPJE 2NVFA 1VF5D 2BMQA 4HJLA 4NBBD 1NTKE 5KLIC 1O7GA 3GZYA 3GB4A 3L73E 2DE6D 4NB9A 2HMMA 3BCCE 3H1HE 4NBDD 2GBWA 3GKQA 4HM6A 3D89A 4HKVA 2IBZE 4NBGD 2YIUC 3GTEA 4P1CH 2E4QA 2XRXA 1VM9A 2BMRA 1PP9E 2DE5D 4HM1A 3VMGD 1Z03A 1G8KB 4QDFB 4NBAD 5CXMA 1RFSA 5KKZC 1O7HA 4HM5A 4PV1D 2XSHA 4NBCD 2DE6A 1JM1A 2YFJA 4HM0A 2XSOA 2DE7D 1O7MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CKF A;  3VCP A;  1BE3 E;  1NDO A;  2E75 D;  1ULJ A;  4P1B H;  3GCF A;  1WQL A;  4NBF A;  3H1I E;  3GOB A;  2XR8 A;  3L70 E;  3VMG A;  1KB9 E;  4PD4 E;  3DQY A;  2NWF A;  4QUP A;  4HM7 A;  1SQX E;  3L75 E;  3VCA A;  4HM3 A;  4NBE A;  2HMO A;  1SJG A;  2HMJ A;  2JZA A;  4QDF A;  1WW9 A;  2QJK C;  1RIE A;  3GL2 A;  3VMI A;  2B1X A;  1FQT A;  2DE7 A;  1VCK A;  4NBB A;  3TGU E;  4QUQ A;  4EMJ B;  1L0L E;  1O7W A;  1NYK A;  2FYU E;  3CX5 E;  3H1L E;  3N0Q A;  2E76 D;  1ULI A;  2FYN C;  2BMO A;  4NBD A;  4QDD A;  3CWB E;  1O7P A;  1Q90 C;  1NU1 E;  1EG9 A;  2HMN A;  2E74 D;  2ZYL A;  4NBG A;  1NTM E;  4NB8 D;  4QDC A;  3GTS A;  4HM2 A;  4QUR A;  2QJP C;  2NVG A;  2DE5 A;  3H1J E;  3VMH D;  3GCE A;  3VMI D;  4NBA A;  2BCC E;  3L72 E;  3L71 E;  3AZC A;  3C0D A;  4NBC A;  4NB9 D;  2YVJ B;  3H1K E;  4HM8 A;  2GBX A;  4H13 D;  4AAY B;  1SQB E;  2JO6 A;  2A06 E;  5HL4 A;  4QCK A;  4NB8 A;  2Q3W A;  3VMH A;  1UUW A;  4HM4 A;  2HMK A;  4NBH D;  2YFI A;  3FOU A;  1O7N A;  1SQV E;  2I7F A;  3GKE A;  3GZX A;  1SQQ E;  3GL0 A;  5AEU A;  4AIV A;  3L74 E;  1EZV E;  2NVE A;  4OGQ D;  1Z01 A;  4NBF D;  1G8J B;  2E4P A;  1L0N E;  2QPZ A;  4H0L D;  2B24 A;  4H44 D;  4U3F E;  1SQP E;  2QJY C;  4NBH A;  4NBE D;  1NTZ E;  1UUV A;  1Z02 A;  1KYO E;  5BOK A;  1ZRT E;  1P84 E;  2D2C D;  2NUM A;  2NUK A;  2YFL A;  5AEW A;  3EN1 A;  2ZT9 D;  2HML A;  3CXH E;  3EQQ A;  5KLV E;  1BCC E;  1PPJ E;  2NVF A;  1VF5 D;  2BMQ A;  4HJL A;  4NBB D;  1NTK E;  5KLI C;  1O7G A;  3GZY A;  3GB4 A;  3L73 E;  2DE6 D;  4NB9 A;  2HMM A;  3BCC E;  3H1H E;  4NBD D;  2GBW A;  3GKQ A;  4HM6 A;  3D89 A;  4HKV A;  2IBZ E;  4NBG D;  2YIU C;  3GTE A;  4P1C H;  2E4Q A;  2XRX A;  1VM9 A;  2BMR A;  1PP9 E;  2DE5 D;  4HM1 A;  3VMG D;  1Z03 A;  1G8K B;  4QDF B;  4NBA D;  5CXM A;  1RFS A;  5KKZ C;  1O7H A;  4HM5 A;  4PV1 D;  2XSH A;  4NBC D;  2DE6 A;  1JM1 A;  2YFJ A;  4HM0 A;  2XSO A;  2DE7 D;  1O7M A; 
#chains in the Genus database with same CATH topology
 2CKF A;  3VCP A;  1BE3 E;  1NDO A;  2E75 D;  1ULJ A;  4P1B H;  3GCF A;  1WQL A;  4NBF A;  3H1I E;  3GOB A;  2XR8 A;  3L70 E;  3VMG A;  1KB9 E;  4PD4 E;  3DQY A;  2NWF A;  4QUP A;  4HM7 A;  1SQX E;  3L75 E;  3VCA A;  4HM3 A;  4NBE A;  2HMO A;  1SJG A;  2HMJ A;  2JZA A;  4QDF A;  1WW9 A;  2QJK C;  1RIE A;  3GL2 A;  3VMI A;  2B1X A;  1FQT A;  2DE7 A;  1VCK A;  4NBB A;  3TGU E;  4QUQ A;  4EMJ B;  1L0L E;  1O7W A;  1NYK A;  2FYU E;  3CX5 E;  3H1L E;  3N0Q A;  2E76 D;  1ULI A;  2FYN C;  2BMO A;  4NBD A;  4QDD A;  3CWB E;  1O7P A;  1Q90 C;  1NU1 E;  1EG9 A;  2HMN A;  2E74 D;  2ZYL A;  4NBG A;  1NTM E;  4NB8 D;  4QDC A;  3GTS A;  4HM2 A;  4QUR A;  2QJP C;  2NVG A;  2DE5 A;  3H1J E;  3VMH D;  3GCE A;  3VMI D;  4NBA A;  2BCC E;  3L72 E;  3L71 E;  3AZC A;  3C0D A;  4NBC A;  4NB9 D;  2YVJ B;  3H1K E;  4HM8 A;  2GBX A;  4H13 D;  4AAY B;  1SQB E;  2JO6 A;  2A06 E;  5HL4 A;  4QCK A;  4NB8 A;  2Q3W A;  3VMH A;  1UUW A;  4HM4 A;  2HMK A;  4NBH D;  2YFI A;  3FOU A;  1O7N A;  1SQV E;  2I7F A;  3GKE A;  3GZX A;  1SQQ E;  3GL0 A;  5AEU A;  4AIV A;  3L74 E;  1EZV E;  2NVE A;  4OGQ D;  1Z01 A;  4NBF D;  1G8J B;  2E4P A;  1L0N E;  2QPZ A;  4H0L D;  2B24 A;  4H44 D;  4U3F E;  1SQP E;  2QJY C;  4NBH A;  4NBE D;  1NTZ E;  1UUV A;  1Z02 A;  1KYO E;  5BOK A;  1ZRT E;  1P84 E;  2D2C D;  2NUM A;  2NUK A;  2YFL A;  5AEW A;  3EN1 A;  2ZT9 D;  2HML A;  3CXH E;  3EQQ A;  5KLV E;  1BCC E;  1PPJ E;  2NVF A;  1VF5 D;  2BMQ A;  4HJL A;  4NBB D;  1NTK E;  5KLI C;  1O7G A;  3GZY A;  3GB4 A;  3L73 E;  2DE6 D;  4NB9 A;  2HMM A;  3BCC E;  3H1H E;  4NBD D;  2GBW A;  3GKQ A;  4HM6 A;  3D89 A;  4HKV A;  2IBZ E;  4NBG D;  2YIU C;  3GTE A;  4P1C H;  2E4Q A;  2XRX A;  1VM9 A;  2BMR A;  1PP9 E;  2DE5 D;  4HM1 A;  3VMG D;  1Z03 A;  1G8K B;  4QDF B;  4NBA D;  5CXM A;  1RFS A;  5KKZ C;  1O7H A;  4HM5 A;  4PV1 D;  2XSH A;  4NBC D;  2DE6 A;  1JM1 A;  2YFJ A;  4HM0 A;  2XSO A;  2DE7 D;  1O7M A; 
#chains in the Genus database with same CATH homology
 2CKF A;  3VCP A;  1BE3 E;  1NDO A;  2E75 D;  1ULJ A;  4P1B H;  3GCF A;  1WQL A;  4NBF A;  3H1I E;  3GOB A;  2XR8 A;  3L70 E;  3VMG A;  1KB9 E;  4PD4 E;  3DQY A;  2NWF A;  4QUP A;  4HM7 A;  1SQX E;  3L75 E;  3VCA A;  4HM3 A;  4NBE A;  2HMO A;  1SJG A;  2HMJ A;  2JZA A;  4QDF A;  1WW9 A;  2QJK C;  1RIE A;  3GL2 A;  3VMI A;  2B1X A;  1FQT A;  2DE7 A;  1VCK A;  4NBB A;  3TGU E;  4QUQ A;  4EMJ B;  1L0L E;  1O7W A;  1NYK A;  2FYU E;  3CX5 E;  3H1L E;  3N0Q A;  2E76 D;  1ULI A;  2FYN C;  2BMO A;  4NBD A;  4QDD A;  3CWB E;  1O7P A;  1Q90 C;  1NU1 E;  1EG9 A;  2HMN A;  2E74 D;  2ZYL A;  4NBG A;  1NTM E;  4NB8 D;  4QDC A;  3GTS A;  4HM2 A;  4QUR A;  2QJP C;  2NVG A;  2DE5 A;  3H1J E;  3VMH D;  3GCE A;  3VMI D;  4NBA A;  2BCC E;  3L72 E;  3L71 E;  3AZC A;  3C0D A;  4NBC A;  4NB9 D;  2YVJ B;  3H1K E;  4HM8 A;  2GBX A;  4H13 D;  4AAY B;  1SQB E;  2JO6 A;  2A06 E;  5HL4 A;  4QCK A;  4NB8 A;  2Q3W A;  3VMH A;  1UUW A;  4HM4 A;  2HMK A;  4NBH D;  2YFI A;  3FOU A;  1O7N A;  1SQV E;  2I7F A;  3GKE A;  3GZX A;  1SQQ E;  3GL0 A;  5AEU A;  4AIV A;  3L74 E;  1EZV E;  2NVE A;  4OGQ D;  1Z01 A;  4NBF D;  1G8J B;  2E4P A;  1L0N E;  2QPZ A;  4H0L D;  2B24 A;  4H44 D;  4U3F E;  1SQP E;  2QJY C;  4NBH A;  4NBE D;  1NTZ E;  1UUV A;  1Z02 A;  1KYO E;  5BOK A;  1ZRT E;  1P84 E;  2D2C D;  2NUM A;  2NUK A;  2YFL A;  5AEW A;  3EN1 A;  2ZT9 D;  2HML A;  3CXH E;  3EQQ A;  5KLV E;  1BCC E;  1PPJ E;  2NVF A;  1VF5 D;  2BMQ A;  4HJL A;  4NBB D;  1NTK E;  5KLI C;  1O7G A;  3GZY A;  3GB4 A;  3L73 E;  2DE6 D;  4NB9 A;  2HMM A;  3BCC E;  3H1H E;  4NBD D;  2GBW A;  3GKQ A;  4HM6 A;  3D89 A;  4HKV A;  2IBZ E;  4NBG D;  2YIU C;  3GTE A;  4P1C H;  2E4Q A;  2XRX A;  1VM9 A;  2BMR A;  1PP9 E;  2DE5 D;  4HM1 A;  3VMG D;  1Z03 A;  1G8K B;  4QDF B;  4NBA D;  5CXM A;  1RFS A;  5KKZ C;  1O7H A;  4HM5 A;  4PV1 D;  2XSH A;  4NBC D;  2DE6 A;  1JM1 A;  2YFJ A;  4HM0 A;  2XSO A;  2DE7 D;  1O7M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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