2CKUA

Solution structure of 2f13f1 from human fibronectin
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
89
structure length
89
Chain Sequence
EETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIANRCHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords FIBRONECTIN
publication title The Solution and Crystal Structures of a Module Pair from the Staphylococcus Aureus-Binding Site of Human Fibronectin-A Tale with a Twist.
pubmed doi rcsb
source organism Homo sapiens
total genus 6
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2006-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2ckuA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2ckuA02
3ERBA 5FO8C 2XWJI 4A5WB 2O39C 2RL0A 2RKYA 2CG6A 4DJZA 4CSYA 1LY2A 2XWBF 2A55A 2RLQA 4WJG2 3KXVA 3NFPI 3O8EB 1GKNA 1TPMA 4MUCA 2W80A 3ZRZA 1QGBA 5HYTB 1GPZA 3IU3I 2W81A 1OK2A 5JPMG 2B5ID 4LOSA 2RKZA 1ZJKA 2CKUA 3ZD2A 2BZMA 2QY0A 4C16A 1QUBA 1OJYA 3IX0A 1OK1A 2IZ4A 1MD8A 1GKGA 1OK3A 4ZH1D 1CKLA 1TPNA 1H2QP 2IZ3A 1NWVA 4ONTD 3KZJA 2LOJA 2EHFA 2MCYA 1H04P 3GOVA 1FBRA 3SW0X 1Q3XA 1HFIA 3OP8A 5HYUB 3CALA 1O9AA 3M7PA 2RLPA 2UWNA 1TPGA 2YBYA 3EJHA 5HYPA 4K12A 2KRIA 1VVDA 3OXUD 1C1ZA 1OJWA 5HZPB 4JHSA 4PZ5A 3T5OA 1U5MA 3RJ3D 4F4OC 4B2RA 2EC3A 2XRDA 1UOTP 1Z92B 2XQWC 3INBC 1H03P 4AYEA 3L89M 1E8BA 1HFHA 4IGDA 2JRAA 1OJVA 3OEDC 3TVJA 2JGWA 4AYIA 3ZD1A 1ELVA 2JGXA 2G7IA 2KMSA 3MQLA 1SRZA 4AYMA 1OK9A 1E5GA 3GXEA 3R62A 4YNXA 1G4FA 1H2PP 1GHQB 5I0QB 2CG7A 1SS2A 2V8EA 1PPQA 2ERJA 1QO6A 4B2SA 1VVCA 1G4GA 4LOTA 1MD7A 2XRBA 4KKDA 2MCZA 2YRAA 4FXGG 2WIIC 1E88A 4J38B 1HCCA 4AYDA
chains in the Genus database with same CATH superfamily
3ERBA 5DN4A 5FO8C 2XWJI 4A5WB 2O39C 2RL0A 2RKYA 2CG6A 4DJZA 4CSYA 1LY2A 2XWBF 2A55A 2RLQA 4WJG2 2Y8RA 3KXVA 3NFPI 3O8EB 1GKNA 1TPMA 4MUCA 3CI0J 2W80A 3ZRZA 1QGBA 5HYTB 3FGRA 1GPZA 3IU3I 2W81A 1OK2A 5JPMG 2B5ID 4LOSA 2RKZA 1ZJKA 2CKUA 3ZD2A 2BZMA 2QY0A 4C16A 1QUBA 4BWCA 1OJYA 3IX0A 4N7EA 1OK1A 2IZ4A 1MD8A 1GKGA 1OK3A 4ZH1D 1CKLA 1TPNA 1H2QP 4PO7A 2IZ3A 1NWVA 4ONTD 3KZJA 2LOJA 3VWOA 2EHFA 2MCYA 1H04P 3GOVA 1FBRA 3SW0X 1Q3XA 2ZYCA 1HFIA 3OP8A 5HYUB 3CALA 1O9AA 3M7PA 2RLPA 2UWNA 1TPGA 2YBYA 3EJHA 3ZLDA 5HYPA 4K12A 2KRIA 1VVDA 3OXUD 1C1ZA 1OJWA 5HZPB 4JHSA 4PZ5A 3T5OA 1U5MA 3RJ3D 3ZLEA 4F4OC 4B2RA 2EC3A 2XRDA 1UOTP 1Z92B 4APLA 2XQWC 3INBC 1H03P 3FGTA 4AYEA 3L89M 1E8BA 1HFHA 4IGDA 2JRAA 1OJVA 3OEDC 2Y8SA 3TVJA 2JGWA 3K3TA 4AYIA 2Y8TA 3ZD1A 1ELVA 2JGXA 3WSYA 2G7IA 2KMSA 3MQLA 1SRZA 2X2ZA 3WSXA 1RLHA 4AYMA 1OK9A 1E5GA 3GXEA 3R62A 4YNXA 1G4FA 1H2PP 4YIZA 1GHQB 5I0QB 2CG7A 1SS2A 2V8EA 1PPQA 2ERJA 1QO6A 4B2SA 1VVCA 1G4GA 3F6KA 5DN5A 4LOTA 1MD7A 4MSLA 2XRBA 2I2LA 4KKDA 2MCZA 2YRAA 4FXGG 3NJAA 2WIIC 1E88A 4J38B 1HCCA 4AYDA
chains in the Genus database with same CATH topology
3ERBA 5FO8C 2XWJI 4A5WB 2O39C 2RL0A 2RKYA 2CG6A 4DJZA 4CSYA 1LY2A 2XWBF 2A55A 2RLQA 4WJG2 3KXVA 3NFPI 3O8EB 1GKNA 1TPMA 4MUCA 2W80A 3ZRZA 1QGBA 5HYTB 1GPZA 3IU3I 2W81A 1OK2A 5JPMG 2B5ID 4LOSA 2RKZA 1ZJKA 2CKUA 3ZD2A 2BZMA 2QY0A 4C16A 1QUBA 1OJYA 3IX0A 1OK1A 2IZ4A 1MD8A 1GKGA 1OK3A 4ZH1D 1CKLA 1TPNA 1H2QP 2IZ3A 1NWVA 4ONTD 3KZJA 2LOJA 2EHFA 2MCYA 1H04P 3GOVA 1FBRA 3SW0X 1Q3XA 1HFIA 3OP8A 5HYUB 3CALA 1O9AA 3M7PA 2RLPA 2UWNA 1TPGA 2YBYA 3EJHA 5HYPA 4K12A 2KRIA 1VVDA 3OXUD 1C1ZA 1OJWA 5HZPB 4JHSA 4PZ5A 3T5OA 1U5MA 3RJ3D 4F4OC 4B2RA 2EC3A 2XRDA 1UOTP 1Z92B 2XQWC 3INBC 1H03P 4AYEA 3L89M 1E8BA 1HFHA 4IGDA 2JRAA 1OJVA 3OEDC 3TVJA 2JGWA 4AYIA 3ZD1A 1ELVA 2JGXA 2G7IA 2KMSA 3MQLA 1SRZA 4AYMA 1OK9A 1E5GA 3GXEA 3R62A 4YNXA 1G4FA 1H2PP 1GHQB 5I0QB 2CG7A 1SS2A 2V8EA 1PPQA 2ERJA 1QO6A 4B2SA 1VVCA 1G4GA 4LOTA 1MD7A 2XRBA 4KKDA 2MCZA 2YRAA 4FXGG 2WIIC 1E88A 4J38B 1HCCA 4AYDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ERB A;  5FO8 C;  2XWJ I;  4A5W B;  2O39 C;  2RL0 A;  2RKY A;  2CG6 A;  4DJZ A;  4CSY A;  1LY2 A;  2XWB F;  2A55 A;  2RLQ A;  4WJG 2;  3KXV A;  3NFP I;  3O8E B;  1GKN A;  1TPM A;  4MUC A;  2W80 A;  3ZRZ A;  1QGB A;  5HYT B;  1GPZ A;  3IU3 I;  2W81 A;  1OK2 A;  5JPM G;  2B5I D;  4LOS A;  2RKZ A;  1ZJK A;  2CKU A;  3ZD2 A;  2BZM A;  2QY0 A;  4C16 A;  1QUB A;  1OJY A;  3IX0 A;  1OK1 A;  2IZ4 A;  1MD8 A;  1GKG A;  1OK3 A;  4ZH1 D;  1CKL A;  1TPN A;  1H2Q P;  2IZ3 A;  1NWV A;  4ONT D;  3KZJ A;  2LOJ A;  2EHF A;  2MCY A;  1H04 P;  3GOV A;  1FBR A;  3SW0 X;  1Q3X A;  1HFI A;  3OP8 A;  5HYU B;  3CAL A;  1O9A A;  3M7P A;  2RLP A;  2UWN A;  1TPG A;  2YBY A;  3EJH A;  5HYP A;  4K12 A;  2KRI A;  1VVD A;  3OXU D;  1C1Z A;  1OJW A;  5HZP B;  4JHS A;  4PZ5 A;  3T5O A;  1U5M A;  3RJ3 D;  4F4O C;  4B2R A;  2EC3 A;  2XRD A;  1UOT P;  1Z92 B;  2XQW C;  3INB C;  1H03 P;  4AYE A;  3L89 M;  1E8B A;  1HFH A;  4IGD A;  2JRA A;  1OJV A;  3OED C;  3TVJ A;  2JGW A;  4AYI A;  3ZD1 A;  1ELV A;  2JGX A;  2G7I A;  2KMS A;  3MQL A;  1SRZ A;  4AYM A;  1OK9 A;  1E5G A;  3GXE A;  3R62 A;  4YNX A;  1G4F A;  1H2P P;  1GHQ B;  5I0Q B;  2CG7 A;  1SS2 A;  2V8E A;  1PPQ A;  2ERJ A;  1QO6 A;  4B2S A;  1VVC A;  1G4G A;  4LOT A;  1MD7 A;  2XRB A;  4KKD A;  2MCZ A;  2YRA A;  4FXG G;  2WII C;  1E88 A;  4J38 B;  1HCC A;  4AYD A; 
#chains in the Genus database with same CATH topology
 3ERB A;  5DN4 A;  5FO8 C;  2XWJ I;  4A5W B;  2O39 C;  2RL0 A;  2RKY A;  2CG6 A;  4DJZ A;  4CSY A;  1LY2 A;  2XWB F;  2A55 A;  2RLQ A;  4WJG 2;  2Y8R A;  3KXV A;  3NFP I;  3O8E B;  1GKN A;  1TPM A;  4MUC A;  3CI0 J;  2W80 A;  3ZRZ A;  1QGB A;  5HYT B;  3FGR A;  1GPZ A;  3IU3 I;  2W81 A;  1OK2 A;  5JPM G;  2B5I D;  4LOS A;  2RKZ A;  1ZJK A;  2CKU A;  3ZD2 A;  2BZM A;  2QY0 A;  4C16 A;  1QUB A;  4BWC A;  1OJY A;  3IX0 A;  4N7E A;  1OK1 A;  2IZ4 A;  1MD8 A;  1GKG A;  1OK3 A;  4ZH1 D;  1CKL A;  1TPN A;  1H2Q P;  4PO7 A;  2IZ3 A;  1NWV A;  4ONT D;  3KZJ A;  2LOJ A;  3VWO A;  2EHF A;  2MCY A;  1H04 P;  3GOV A;  1FBR A;  3SW0 X;  1Q3X A;  2ZYC A;  1HFI A;  3OP8 A;  5HYU B;  3CAL A;  1O9A A;  3M7P A;  2RLP A;  2UWN A;  1TPG A;  2YBY A;  3EJH A;  3ZLD A;  5HYP A;  4K12 A;  2KRI A;  1VVD A;  3OXU D;  1C1Z A;  1OJW A;  5HZP B;  4JHS A;  4PZ5 A;  3T5O A;  1U5M A;  3RJ3 D;  3ZLE A;  4F4O C;  4B2R A;  2EC3 A;  2XRD A;  1UOT P;  1Z92 B;  4APL A;  2XQW C;  3INB C;  1H03 P;  3FGT A;  4AYE A;  3L89 M;  1E8B A;  1HFH A;  4IGD A;  2JRA A;  1OJV A;  3OED C;  2Y8S A;  3TVJ A;  2JGW A;  3K3T A;  4AYI A;  2Y8T A;  3ZD1 A;  1ELV A;  2JGX A;  3WSY A;  2G7I A;  2KMS A;  3MQL A;  1SRZ A;  2X2Z A;  3WSX A;  1RLH A;  4AYM A;  1OK9 A;  1E5G A;  3GXE A;  3R62 A;  4YNX A;  1G4F A;  1H2P P;  4YIZ A;  1GHQ B;  5I0Q B;  2CG7 A;  1SS2 A;  2V8E A;  1PPQ A;  2ERJ A;  1QO6 A;  4B2S A;  1VVC A;  1G4G A;  3F6K A;  5DN5 A;  4LOT A;  1MD7 A;  4MSL A;  2XRB A;  2I2L A;  4KKD A;  2MCZ A;  2YRA A;  4FXG G;  3NJA A;  2WII C;  1E88 A;  4J38 B;  1HCC A;  4AYD A; 
#chains in the Genus database with same CATH homology
 3ERB A;  5FO8 C;  2XWJ I;  4A5W B;  2O39 C;  2RL0 A;  2RKY A;  2CG6 A;  4DJZ A;  4CSY A;  1LY2 A;  2XWB F;  2A55 A;  2RLQ A;  4WJG 2;  3KXV A;  3NFP I;  3O8E B;  1GKN A;  1TPM A;  4MUC A;  2W80 A;  3ZRZ A;  1QGB A;  5HYT B;  1GPZ A;  3IU3 I;  2W81 A;  1OK2 A;  5JPM G;  2B5I D;  4LOS A;  2RKZ A;  1ZJK A;  2CKU A;  3ZD2 A;  2BZM A;  2QY0 A;  4C16 A;  1QUB A;  1OJY A;  3IX0 A;  1OK1 A;  2IZ4 A;  1MD8 A;  1GKG A;  1OK3 A;  4ZH1 D;  1CKL A;  1TPN A;  1H2Q P;  2IZ3 A;  1NWV A;  4ONT D;  3KZJ A;  2LOJ A;  2EHF A;  2MCY A;  1H04 P;  3GOV A;  1FBR A;  3SW0 X;  1Q3X A;  1HFI A;  3OP8 A;  5HYU B;  3CAL A;  1O9A A;  3M7P A;  2RLP A;  2UWN A;  1TPG A;  2YBY A;  3EJH A;  5HYP A;  4K12 A;  2KRI A;  1VVD A;  3OXU D;  1C1Z A;  1OJW A;  5HZP B;  4JHS A;  4PZ5 A;  3T5O A;  1U5M A;  3RJ3 D;  4F4O C;  4B2R A;  2EC3 A;  2XRD A;  1UOT P;  1Z92 B;  2XQW C;  3INB C;  1H03 P;  4AYE A;  3L89 M;  1E8B A;  1HFH A;  4IGD A;  2JRA A;  1OJV A;  3OED C;  3TVJ A;  2JGW A;  4AYI A;  3ZD1 A;  1ELV A;  2JGX A;  2G7I A;  2KMS A;  3MQL A;  1SRZ A;  4AYM A;  1OK9 A;  1E5G A;  3GXE A;  3R62 A;  4YNX A;  1G4F A;  1H2P P;  1GHQ B;  5I0Q B;  2CG7 A;  1SS2 A;  2V8E A;  1PPQ A;  2ERJ A;  1QO6 A;  4B2S A;  1VVC A;  1G4G A;  4LOT A;  1MD7 A;  2XRB A;  4KKD A;  2MCZ A;  2YRA A;  4FXG G;  2WII C;  1E88 A;  4J38 B;  1HCC A;  4AYD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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