2CMUA

Crystal structure of a putative peptidyl-arginine deiminase
Total Genus 100
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
334
structure length
334
Chain Sequence
MSLKRMLAEFEKIQAILMAFPHEFSDWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIGYEMLKNLPGVEIAKVDTNDTWARDFGAISIENHGVLECLDFGFNGWGLKYPSNLDNQVNFKLKSLGFLKHPLKTMPYVLEGGSIESDGAGSILTNTQCLLEKNRNPHLNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSACEDKNDEHYTALKKMQEELKTFKKLDKTPYKLIPLEIPKAIFDENQQRLPATYVNFLLCNDALIVPTYNDPKDALILETLKQHTPLEVIGVDCNTLIKQHGSLHCVTMQLYEG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords PUTATIVE PEPTIDYL-ARGININE DEIMINASE
publication title Crystal Structure of a Putative Peptidyl-Arginine Deiminase.
rcsb
source organism Helicobacter pylori 26695
total genus 100
structure length 334
sequence length 334
ec nomenclature ec 3.5.3.6: Arginine deiminase.
pdb deposition date 2006-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04371 PAD_porph Porphyromonas-type peptidyl-arginine deiminase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 2cmuA00
4N2HA 4N2GA 1LXYA 4N2LA 1G61A 3B1TA 4N2KA 2JDXA 1G62A 1JDXA 4N2FA 1H70A 1RXXA 3APNA 3I4AA 2EWOA 3APMA 1WD8A 3H7CX 2CI5A 6JDWA 2ACIA 5AK7A 2CI7A 4JDWA 4BOFA 9JDWA 3JDWA 2JAIA 2DW5A 4N24A 3BPBA 3RHYA 4N2AA 1S9RA 5AK8A 4N26A 1JDWA 4X8GA 2DEYX 4N2IA 2CI4A 7JDWA 1ZBRA 1VKPA 2ABRA 4N2MA 1BWDA 3P8PA 5HP5A 4X8CA 2CI6A 2CI3A 4N22A 4N2NA 4YT9A 4YTGA 2JERA 1WD9A 4N2BA 4DKTA 2CI1A 2AAFA 1WDAA 5AN9I 2A9GA 8JDWA 5M3QA 4N28A 2Q3UA 2C6ZA 3H7KA 5JDWA 4N2EA 3HVMA 3B1UA 4N20A 4E4JA 4N2CA 2JDWA 2DEXX 1XKNA 4N2DA 2JAJA 2CMUA 4N25A 3P8EA 2DEWX 4YTBA 3I2EA
chains in the Genus database with same CATH superfamily
4N2HA 1YNFA 4N2GA 1LXYA 4N2LA 1G61A 3B1TA 4N2KA 2JDXA 1G62A 1JDXA 4N2FA 1H70A 1RXXA 3APNA 3I4AA 2EWOA 3APMA 1WD8A 3H7CX 2CI5A 6JDWA 2ACIA 5AK7A 2CI7A 4JDWA 4BOFA 9JDWA 3JDWA 2JAIA 2DW5A 1YNHA 4N24A 3BPBA 3RHYA 4N2AA 1S9RA 5AK8A 4N26A 1JDWA 4X8GA 2DEYX 4N2IA 2CI4A 7JDWA 1ZBRA 1VKPA 2ABRA 4N2MA 1BWDA 3P8PA 5HP5A 4X8CA 2CI6A 2CI3A 4N22A 4N2NA 1YNIA 4YT9A 4YTGA 2JERA 1WD9A 4N2BA 4DKTA 2CI1A 2AAFA 1WDAA 5AN9I 2A9GA 8JDWA 5M3QA 4N28A 2Q3UA 2C6ZA 3H7KA 5JDWA 4N2EA 3HVMA 3B1UA 4N20A 4E4JA 4N2CA 2JDWA 2DEXX 1XKNA 4N2DA 2JAJA 2CMUA 4N25A 3P8EA 2DEWX 4YTBA 3I2EA
chains in the Genus database with same CATH topology
4N2HA 4N2GA 1LXYA 4N2LA 1G61A 3B1TA 4N2KA 2JDXA 1G62A 1JDXA 4N2FA 1H70A 1RXXA 3APNA 3I4AA 2EWOA 3APMA 1WD8A 3H7CX 2CI5A 6JDWA 2ACIA 5AK7A 2CI7A 4JDWA 4BOFA 9JDWA 3JDWA 2JAIA 2DW5A 4N24A 3BPBA 3RHYA 4N2AA 1S9RA 5AK8A 4N26A 1JDWA 4X8GA 2DEYX 4N2IA 2CI4A 7JDWA 1ZBRA 1VKPA 2ABRA 4N2MA 1BWDA 3P8PA 5HP5A 4X8CA 2CI6A 2CI3A 4N22A 4N2NA 4YT9A 4YTGA 2JERA 1WD9A 4N2BA 4DKTA 2CI1A 2AAFA 1WDAA 5AN9I 2A9GA 8JDWA 5M3QA 4N28A 2Q3UA 2C6ZA 3H7KA 5JDWA 4N2EA 3HVMA 3B1UA 4N20A 4E4JA 4N2CA 2JDWA 2DEXX 1XKNA 4N2DA 2JAJA 2CMUA 4N25A 3P8EA 2DEWX 4YTBA 3I2EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N2H A;  4N2G A;  1LXY A;  4N2L A;  1G61 A;  3B1T A;  4N2K A;  2JDX A;  1G62 A;  1JDX A;  4N2F A;  1H70 A;  1RXX A;  3APN A;  3I4A A;  2EWO A;  3APM A;  1WD8 A;  3H7C X;  2CI5 A;  6JDW A;  2ACI A;  5AK7 A;  2CI7 A;  4JDW A;  4BOF A;  9JDW A;  3JDW A;  2JAI A;  2DW5 A;  4N24 A;  3BPB A;  3RHY A;  4N2A A;  1S9R A;  5AK8 A;  4N26 A;  1JDW A;  4X8G A;  2DEY X;  4N2I A;  2CI4 A;  7JDW A;  1ZBR A;  1VKP A;  2ABR A;  4N2M A;  1BWD A;  3P8P A;  5HP5 A;  4X8C A;  2CI6 A;  2CI3 A;  4N22 A;  4N2N A;  4YT9 A;  4YTG A;  2JER A;  1WD9 A;  4N2B A;  4DKT A;  2CI1 A;  2AAF A;  1WDA A;  5AN9 I;  2A9G A;  8JDW A;  5M3Q A;  4N28 A;  2Q3U A;  2C6Z A;  3H7K A;  5JDW A;  4N2E A;  3HVM A;  3B1U A;  4N20 A;  4E4J A;  4N2C A;  2JDW A;  2DEX X;  1XKN A;  4N2D A;  2JAJ A;  2CMU A;  4N25 A;  3P8E A;  2DEW X;  4YTB A;  3I2E A; 
#chains in the Genus database with same CATH topology
 4N2H A;  1YNF A;  4N2G A;  1LXY A;  4N2L A;  1G61 A;  3B1T A;  4N2K A;  2JDX A;  1G62 A;  1JDX A;  4N2F A;  1H70 A;  1RXX A;  3APN A;  3I4A A;  2EWO A;  3APM A;  1WD8 A;  3H7C X;  2CI5 A;  6JDW A;  2ACI A;  5AK7 A;  2CI7 A;  4JDW A;  4BOF A;  9JDW A;  3JDW A;  2JAI A;  2DW5 A;  1YNH A;  4N24 A;  3BPB A;  3RHY A;  4N2A A;  1S9R A;  5AK8 A;  4N26 A;  1JDW A;  4X8G A;  2DEY X;  4N2I A;  2CI4 A;  7JDW A;  1ZBR A;  1VKP A;  2ABR A;  4N2M A;  1BWD A;  3P8P A;  5HP5 A;  4X8C A;  2CI6 A;  2CI3 A;  4N22 A;  4N2N A;  1YNI A;  4YT9 A;  4YTG A;  2JER A;  1WD9 A;  4N2B A;  4DKT A;  2CI1 A;  2AAF A;  1WDA A;  5AN9 I;  2A9G A;  8JDW A;  5M3Q A;  4N28 A;  2Q3U A;  2C6Z A;  3H7K A;  5JDW A;  4N2E A;  3HVM A;  3B1U A;  4N20 A;  4E4J A;  4N2C A;  2JDW A;  2DEX X;  1XKN A;  4N2D A;  2JAJ A;  2CMU A;  4N25 A;  3P8E A;  2DEW X;  4YTB A;  3I2E A; 
#chains in the Genus database with same CATH homology
 4N2H A;  4N2G A;  1LXY A;  4N2L A;  1G61 A;  3B1T A;  4N2K A;  2JDX A;  1G62 A;  1JDX A;  4N2F A;  1H70 A;  1RXX A;  3APN A;  3I4A A;  2EWO A;  3APM A;  1WD8 A;  3H7C X;  2CI5 A;  6JDW A;  2ACI A;  5AK7 A;  2CI7 A;  4JDW A;  4BOF A;  9JDW A;  3JDW A;  2JAI A;  2DW5 A;  4N24 A;  3BPB A;  3RHY A;  4N2A A;  1S9R A;  5AK8 A;  4N26 A;  1JDW A;  4X8G A;  2DEY X;  4N2I A;  2CI4 A;  7JDW A;  1ZBR A;  1VKP A;  2ABR A;  4N2M A;  1BWD A;  3P8P A;  5HP5 A;  4X8C A;  2CI6 A;  2CI3 A;  4N22 A;  4N2N A;  4YT9 A;  4YTG A;  2JER A;  1WD9 A;  4N2B A;  4DKT A;  2CI1 A;  2AAF A;  1WDA A;  5AN9 I;  2A9G A;  8JDW A;  5M3Q A;  4N28 A;  2Q3U A;  2C6Z A;  3H7K A;  5JDW A;  4N2E A;  3HVM A;  3B1U A;  4N20 A;  4E4J A;  4N2C A;  2JDW A;  2DEX X;  1XKN A;  4N2D A;  2JAJ A;  2CMU A;  4N25 A;  3P8E A;  2DEW X;  4YTB A;  3I2E A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...