2CO9A

Solution structure of the hmg_box domain of thymus high mobility group box protein tox from mouse
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
102
structure length
102
Chain Sequence
GSSGSSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYTDSGPSSG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription
molecule keywords thymus high mobility group box protein TOX
publication title Solution structure of the HMG_box domain of thymus high mobility group box protein TOX from mouse
rcsb
source organism Mus musculus
total genus 22
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00505 HMG_box HMG (high mobility group) box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 2co9A00
2GZKA 3F27D 4QR9A 2E6OA 2LE4A 1NHMA 1WXLA 3U2BC 3FGHA 2RTUA 1CG7A 2D7LA 4NNUA 1L8ZA 1QRVA 4A3NA 2YUKA 1WGFA 1HRZA 1NHNA 2EQZA 1J47A 1WZ6A 1CKTA 2CRJA 1O4XB 1HSNA 3TMMA 4EUWA 3NM9A 2LY4A 1HMEA 4S2QD 1J5NA 4Y60C 2LEFA 4NODA 1LWMA 2YULA 1L8YA 2YQIA 1J3CA 1E7JA 3TQ6A 2CTOA 1J3XA 2CS1A 1V64A 2LHJA 1HMFA 1J3DA 1K99A 1GT0D 2YRQA 1AABA 1HSMA 1HRYA 1HMAA 1J46A 2CO9A 2HDZA 1I11A 1V63A
chains in the Genus database with same CATH superfamily
2GZKA 3ABOB 3F27D 4QR9A 2E6OA 2LE4A 1NHMA 1WXLA 3U2BC 3FGHA 2RTUA 1CG7A 2D7LA 4NNUA 1L8ZA 4KQEA 1QRVA 4A3NA 2YUKA 1WGFA 1HRZA 1NHNA 2EQZA 2VSFA 1WZ6A 1J47A 2CRJA 1O4XB 1CKTA 3TMMA 4EUWA 3NM9A 2LY4A 1HMEA 4S2QD 1J5NA 4Y60C 2LEFA 4NODA 1LWMA 2YULA 1L8YA 2YQIA 1J3CA 1E7JA 3AO0B 3TQ6A 2CTOA 1J3XA 2CS1A 1V64A 2LHJA 1HMFA 1J3DA 1HSNA 3ABSB 1K99A 1GT0D 4A15A 2YRQA 1AABA 1HSMA 3ANYB 3ABRB 5H8WA 1HRYA 1J46A 1HMAA 2CO9A 2HDZA 1I11A 1V63A
chains in the Genus database with same CATH topology
2GZKA 3F27D 4QR9A 2E6OA 2LE4A 1NHMA 1WXLA 3U2BC 3FGHA 2RTUA 1CG7A 2D7LA 4NNUA 1L8ZA 1QRVA 4A3NA 2YUKA 1WGFA 1HRZA 1NHNA 2EQZA 1J47A 1WZ6A 1CKTA 2CRJA 1O4XB 1HSNA 3TMMA 4EUWA 3NM9A 2LY4A 1HMEA 4S2QD 1J5NA 4Y60C 2LEFA 4NODA 1LWMA 2YULA 1L8YA 2YQIA 1J3CA 1E7JA 3TQ6A 2CTOA 1J3XA 2CS1A 1V64A 2LHJA 1HMFA 1J3DA 1K99A 1GT0D 2YRQA 1AABA 1HSMA 1HRYA 1HMAA 1J46A 2CO9A 2HDZA 1I11A 1V63A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GZK A;  3F27 D;  4QR9 A;  2E6O A;  2LE4 A;  1NHM A;  1WXL A;  3U2B C;  3FGH A;  2RTU A;  1CG7 A;  2D7L A;  4NNU A;  1L8Z A;  1QRV A;  4A3N A;  2YUK A;  1WGF A;  1HRZ A;  1NHN A;  2EQZ A;  1J47 A;  1WZ6 A;  1CKT A;  2CRJ A;  1O4X B;  1HSN A;  3TMM A;  4EUW A;  3NM9 A;  2LY4 A;  1HME A;  4S2Q D;  1J5N A;  4Y60 C;  2LEF A;  4NOD A;  1LWM A;  2YUL A;  1L8Y A;  2YQI A;  1J3C A;  1E7J A;  3TQ6 A;  2CTO A;  1J3X A;  2CS1 A;  1V64 A;  2LHJ A;  1HMF A;  1J3D A;  1K99 A;  1GT0 D;  2YRQ A;  1AAB A;  1HSM A;  1HRY A;  1HMA A;  1J46 A;  2CO9 A;  2HDZ A;  1I11 A;  1V63 A; 
#chains in the Genus database with same CATH topology
 2GZK A;  3ABO B;  3F27 D;  4QR9 A;  2E6O A;  2LE4 A;  1NHM A;  1WXL A;  3U2B C;  3FGH A;  2RTU A;  1CG7 A;  2D7L A;  4NNU A;  1L8Z A;  4KQE A;  1QRV A;  4A3N A;  2YUK A;  1WGF A;  1HRZ A;  1NHN A;  2EQZ A;  2VSF A;  1WZ6 A;  1J47 A;  2CRJ A;  1O4X B;  1CKT A;  3TMM A;  4EUW A;  3NM9 A;  2LY4 A;  1HME A;  4S2Q D;  1J5N A;  4Y60 C;  2LEF A;  4NOD A;  1LWM A;  2YUL A;  1L8Y A;  2YQI A;  1J3C A;  1E7J A;  3AO0 B;  3TQ6 A;  2CTO A;  1J3X A;  2CS1 A;  1V64 A;  2LHJ A;  1HMF A;  1J3D A;  1HSN A;  3ABS B;  1K99 A;  1GT0 D;  4A15 A;  2YRQ A;  1AAB A;  1HSM A;  3ANY B;  3ABR B;  5H8W A;  1HRY A;  1J46 A;  1HMA A;  2CO9 A;  2HDZ A;  1I11 A;  1V63 A; 
#chains in the Genus database with same CATH homology
 2GZK A;  3F27 D;  4QR9 A;  2E6O A;  2LE4 A;  1NHM A;  1WXL A;  3U2B C;  3FGH A;  2RTU A;  1CG7 A;  2D7L A;  4NNU A;  1L8Z A;  1QRV A;  4A3N A;  2YUK A;  1WGF A;  1HRZ A;  1NHN A;  2EQZ A;  1J47 A;  1WZ6 A;  1CKT A;  2CRJ A;  1O4X B;  1HSN A;  3TMM A;  4EUW A;  3NM9 A;  2LY4 A;  1HME A;  4S2Q D;  1J5N A;  4Y60 C;  2LEF A;  4NOD A;  1LWM A;  2YUL A;  1L8Y A;  2YQI A;  1J3C A;  1E7J A;  3TQ6 A;  2CTO A;  1J3X A;  2CS1 A;  1V64 A;  2LHJ A;  1HMF A;  1J3D A;  1K99 A;  1GT0 D;  2YRQ A;  1AAB A;  1HSM A;  1HRY A;  1HMA A;  1J46 A;  2CO9 A;  2HDZ A;  1I11 A;  1V63 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...