2CQLA

Solution structure of the n-terminal domain of human ribosomal protein l9
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
100
structure length
100
Chain Sequence
GSSGSSGMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords 60S ribosomal protein L9
publication title Solution structure of the N-terminal domain of human ribosomal protein L9
rcsb
source organism Homo sapiens
total genus 15
structure length 100
sequence length 100
ec nomenclature
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 2cqlA01
5HL7E 3CC4E 3PIOE 2ZJQE 1QVFE 2OTJE 4U67E 4WFBE 1K73G 1VQ4E 1VQOE 3CXCE 3G6EE 1YJWE 1N8RG 1VQ9E 5AN9B 3CCRE 1Q82G 4IOAE 3CMEE 3I56E 3OW2E 3J7ZG 4IOCE 5GADG 3CCSE 1M90G 3DLLE 3CCJE 5H1SI 1M1KG 3CCEE 1VQPE 1YI2E 4IO9E 1KQSE 4WFNE 3G4SE 4WCEE 1RL6A 1VQ8E 5GAGG 1YITE 4WFAE 2ZJPE 1Q86G 1NJIG 5DM7E 3CCQE 1VQME 3CC7E 1VQ7E 1Q81G 1Q7YG 4UY8G 2ZJRE 5JVHE 3CC2E 1VQ6E 1K8AG 1W2BE 5JVGE 1VQ5E 2QA4E 3CMAE 5DM6E 3CD6E 3CF5E 5GAHG 3CPWE 3CCLE 4WF9E 3CCUE 1VQKE 1K9MG 5GAEG 3I55E 3G71E 2CQLA 3PIPE 1VQNE 1KD1G 5MLCH 1YJ9E 1YHQE 1YIJE 1YJNE 2QEXE 1S72E 1JJ2E 3CCME 1VQLE 1KC8G 2OTLE 1QVGE 3CCVE
chains in the Genus database with same CATH superfamily
5HL7E 3CC4E 3PIOE 3CKGA 2ZJQE 1P4PA 1QVFE 2OTJE 4U67E 2G8CO 3CKFA 4WFBE 1K73G 1VQ4E 1VQOE 3CXCE 3G6EE 1YJWE 1N8RG 2OL7A 1VQ9E 3AUMO 5AN9B 3CCRE 1Q82G 4IOAE 3CMEE 1FJ1E 3I56E 3OW2E 2OL6O 3J7ZG 4IOCE 5GADG 3CCSE 1M90G 3DLLE 3CCJE 5H1SI 2I5ZO 1M1KG 3CCEE 5B11O 1VQPE 1YI2E 2OY8A 5B10O 4IO9E 1KQSE 4WFNE 3G4SE 3EC5A 4WCEE 2FKGA 1RL6A 3IGEA 3IG9A 2PI3O 1OSPO 1VQ8E 2HKDA 5GAGG 1YITE 4WFAE 2ZJPE 1Q86G 1NJIG 5DM7E 3CCQE 1VQME 2OY1O 3CC7E 1VQ7E 2OY7A 1Q81G 1Q7YG 4UY8G 2OYBO 2ZJRE 1RJLC 5JVHE 3CC2E 1VQ6E 1K8AG 1W2BE 5JVGE 1VQ5E 2QA4E 3CMAE 5DM6E 3CD6E 3CF5E 5GAHG 3CPWE 3CCLE 4WF9E 2OL8O 3CCUE 1VQKE 1K9MG 5GAEG 3I55E 3G71E 2CQLA 3PIPE 5B3MO 2FKJA 1VQNE 1KD1G 5MLCH 1YJ9E 5B2AO 2I5VO 1YHQE 1YIJE 1YJNE 2AF5A 2OY5O 2QEXE 1S72E 1JJ2E 3CCME 1VQLE 1KC8G 2OTLE 1QVGE 3CCVE
chains in the Genus database with same CATH topology
5HL7E 3CC4E 3PIOE 2ZJQE 1QVFE 2OTJE 4U67E 4WFBE 1K73G 1VQ4E 1VQOE 3CXCE 3G6EE 1YJWE 1N8RG 1VQ9E 5AN9B 3CCRE 1Q82G 4IOAE 3CMEE 3I56E 3OW2E 3J7ZG 4IOCE 5GADG 3CCSE 1M90G 3DLLE 3CCJE 5H1SI 1M1KG 3CCEE 1VQPE 1YI2E 4IO9E 1KQSE 4WFNE 3G4SE 4WCEE 1RL6A 1VQ8E 5GAGG 1YITE 4WFAE 2ZJPE 1Q86G 1NJIG 5DM7E 3CCQE 1VQME 3CC7E 1VQ7E 1Q81G 1Q7YG 4UY8G 2ZJRE 5JVHE 3CC2E 1VQ6E 1K8AG 1W2BE 5JVGE 1VQ5E 2QA4E 3CMAE 5DM6E 3CD6E 3CF5E 5GAHG 3CPWE 3CCLE 4WF9E 3CCUE 1VQKE 1K9MG 5GAEG 3I55E 3G71E 2CQLA 3PIPE 1VQNE 1KD1G 5MLCH 1YJ9E 1YHQE 1YIJE 1YJNE 2QEXE 1S72E 1JJ2E 3CCME 1VQLE 1KC8G 2OTLE 1QVGE 3CCVE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL7 E;  3CC4 E;  3PIO E;  2ZJQ E;  1QVF E;  2OTJ E;  4U67 E;  4WFB E;  1K73 G;  1VQ4 E;  1VQO E;  3CXC E;  3G6E E;  1YJW E;  1N8R G;  1VQ9 E;  5AN9 B;  3CCR E;  1Q82 G;  4IOA E;  3CME E;  3I56 E;  3OW2 E;  3J7Z G;  4IOC E;  5GAD G;  3CCS E;  1M90 G;  3DLL E;  3CCJ E;  5H1S I;  1M1K G;  3CCE E;  1VQP E;  1YI2 E;  4IO9 E;  1KQS E;  4WFN E;  3G4S E;  4WCE E;  1RL6 A;  1VQ8 E;  5GAG G;  1YIT E;  4WFA E;  2ZJP E;  1Q86 G;  1NJI G;  5DM7 E;  3CCQ E;  1VQM E;  3CC7 E;  1VQ7 E;  1Q81 G;  1Q7Y G;  4UY8 G;  2ZJR E;  5JVH E;  3CC2 E;  1VQ6 E;  1K8A G;  1W2B E;  5JVG E;  1VQ5 E;  2QA4 E;  3CMA E;  5DM6 E;  3CD6 E;  3CF5 E;  5GAH G;  3CPW E;  3CCL E;  4WF9 E;  3CCU E;  1VQK E;  1K9M G;  5GAE G;  3I55 E;  3G71 E;  2CQL A;  3PIP E;  1VQN E;  1KD1 G;  5MLC H;  1YJ9 E;  1YHQ E;  1YIJ E;  1YJN E;  2QEX E;  1S72 E;  1JJ2 E;  3CCM E;  1VQL E;  1KC8 G;  2OTL E;  1QVG E;  3CCV E; 
#chains in the Genus database with same CATH topology
 5HL7 E;  3CC4 E;  3PIO E;  3CKG A;  2ZJQ E;  1P4P A;  1QVF E;  2OTJ E;  4U67 E;  2G8C O;  3CKF A;  4WFB E;  1K73 G;  1VQ4 E;  1VQO E;  3CXC E;  3G6E E;  1YJW E;  1N8R G;  2OL7 A;  1VQ9 E;  3AUM O;  5AN9 B;  3CCR E;  1Q82 G;  4IOA E;  3CME E;  1FJ1 E;  3I56 E;  3OW2 E;  2OL6 O;  3J7Z G;  4IOC E;  5GAD G;  3CCS E;  1M90 G;  3DLL E;  3CCJ E;  5H1S I;  2I5Z O;  1M1K G;  3CCE E;  5B11 O;  1VQP E;  1YI2 E;  2OY8 A;  5B10 O;  4IO9 E;  1KQS E;  4WFN E;  3G4S E;  3EC5 A;  4WCE E;  2FKG A;  1RL6 A;  3IGE A;  3IG9 A;  2PI3 O;  1OSP O;  1VQ8 E;  2HKD A;  5GAG G;  1YIT E;  4WFA E;  2ZJP E;  1Q86 G;  1NJI G;  5DM7 E;  3CCQ E;  1VQM E;  2OY1 O;  3CC7 E;  1VQ7 E;  2OY7 A;  1Q81 G;  1Q7Y G;  4UY8 G;  2OYB O;  2ZJR E;  1RJL C;  5JVH E;  3CC2 E;  1VQ6 E;  1K8A G;  1W2B E;  5JVG E;  1VQ5 E;  2QA4 E;  3CMA E;  5DM6 E;  3CD6 E;  3CF5 E;  5GAH G;  3CPW E;  3CCL E;  4WF9 E;  2OL8 O;  3CCU E;  1VQK E;  1K9M G;  5GAE G;  3I55 E;  3G71 E;  2CQL A;  3PIP E;  5B3M O;  2FKJ A;  1VQN E;  1KD1 G;  5MLC H;  1YJ9 E;  5B2A O;  2I5V O;  1YHQ E;  1YIJ E;  1YJN E;  2AF5 A;  2OY5 O;  2QEX E;  1S72 E;  1JJ2 E;  3CCM E;  1VQL E;  1KC8 G;  2OTL E;  1QVG E;  3CCV E; 
#chains in the Genus database with same CATH homology
 5HL7 E;  3CC4 E;  3PIO E;  2ZJQ E;  1QVF E;  2OTJ E;  4U67 E;  4WFB E;  1K73 G;  1VQ4 E;  1VQO E;  3CXC E;  3G6E E;  1YJW E;  1N8R G;  1VQ9 E;  5AN9 B;  3CCR E;  1Q82 G;  4IOA E;  3CME E;  3I56 E;  3OW2 E;  3J7Z G;  4IOC E;  5GAD G;  3CCS E;  1M90 G;  3DLL E;  3CCJ E;  5H1S I;  1M1K G;  3CCE E;  1VQP E;  1YI2 E;  4IO9 E;  1KQS E;  4WFN E;  3G4S E;  4WCE E;  1RL6 A;  1VQ8 E;  5GAG G;  1YIT E;  4WFA E;  2ZJP E;  1Q86 G;  1NJI G;  5DM7 E;  3CCQ E;  1VQM E;  3CC7 E;  1VQ7 E;  1Q81 G;  1Q7Y G;  4UY8 G;  2ZJR E;  5JVH E;  3CC2 E;  1VQ6 E;  1K8A G;  1W2B E;  5JVG E;  1VQ5 E;  2QA4 E;  3CMA E;  5DM6 E;  3CD6 E;  3CF5 E;  5GAH G;  3CPW E;  3CCL E;  4WF9 E;  3CCU E;  1VQK E;  1K9M G;  5GAE G;  3I55 E;  3G71 E;  2CQL A;  3PIP E;  1VQN E;  1KD1 G;  5MLC H;  1YJ9 E;  1YHQ E;  1YIJ E;  1YJN E;  2QEX E;  1S72 E;  1JJ2 E;  3CCM E;  1VQL E;  1KC8 G;  2OTL E;  1QVG E;  3CCV E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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