2CR7A

Solution structure of the first pah domain of the mouse transcriptional repressor sin3b
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
80
structure length
80
Chain Sequence
GSSGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords Paired amphipathic helix protein Sin3b
publication title Solution structure of the first PAH domain of the mouse transcriptional repressor SIN3B
rcsb
source organism Mus musculus
total genus 18
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02671 PAH Paired amphipathic helix repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1160.11 Mainly Alpha Up-down Bundle Paired amphipathic helix 2 (pah2 repeat) Paired amphipathic helix 2cr7A01
2LD7B 1PD7A 1G1EB 2RMSA 2F05A 2L9SB 1S5QB 1S5RB 2CR7A 1E91A 2CZYA 2RMRA
chains in the Genus database with same CATH superfamily
1PD7A 3K1RA 1S5RB 4FQNA 4YKDA 2RMRA 2LD7B 2LSRA 2KBRA 2RMSA 2L9SB 2CR7A 4YKCA 5F3XA 4Y5OA 1G1EB 2F05A 1S5QB 2KBQA 1E91A 2CZYA 4YL6A
chains in the Genus database with same CATH topology
2LD7B 1PD7A 1G1EB 2RMSA 2F05A 2L9SB 1S5QB 1S5RB 2CR7A 1E91A 2CZYA 2RMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LD7 B;  1PD7 A;  1G1E B;  2RMS A;  2F05 A;  2L9S B;  1S5Q B;  1S5R B;  2CR7 A;  1E91 A;  2CZY A;  2RMR A; 
#chains in the Genus database with same CATH topology
 1PD7 A;  3K1R A;  1S5R B;  4FQN A;  4YKD A;  2RMR A;  2LD7 B;  2LSR A;  2KBR A;  2RMS A;  2L9S B;  2CR7 A;  4YKC A;  5F3X A;  4Y5O A;  1G1E B;  2F05 A;  1S5Q B;  2KBQ A;  1E91 A;  2CZY A;  4YL6 A; 
#chains in the Genus database with same CATH homology
 2LD7 B;  1PD7 A;  1G1E B;  2RMS A;  2F05 A;  2L9S B;  1S5Q B;  1S5R B;  2CR7 A;  1E91 A;  2CZY A;  2RMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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