2CRQA

Solution structure of c-terminal domain of riken cdna 2810012l14
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
112
structure length
112
Chain Sequence
GSSGSSGPKTGPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIKRRKDAEQSEEETEEIFNQILQTMPDIATFSSRPKAIRGGTASMCVFRHLSKKEEKSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords mitochondrial translational initiation factor 3
publication title Solution structure of C-terminal domain of RIKEN cDNA 2810012L14
rcsb
source organism Mus musculus
total genus 20
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00707 IF3_C Translation initiation factor IF-3, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.10 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Translation initiation factor 3 (IF-3), C-terminal domain 2crqA01
2CRQA 2M71A 1TIGA 2IFEA
chains in the Genus database with same CATH superfamily
4OLFA 4HD0A 1Y9XA 4TWAA 1LN4A 4YDQA 1JO0A 1VR4A 1JE3A 1H4SA 3HZ7A 3WBMA 4HVCA 4EO0A 3LVJC 1XEZA 3IALA 1H0XA 2IFEA 3ZIHA 3TTFA 2A2YA 4FBKA 3ZIEA 3TSPA 1NJ8A 3QKBA 4NCXA 3VTHA 1DCJA 2LN3A 1Y2IA 2EH1A 3TSQA 2Q3VA 4Z9EA 3IABA 1JDQA 3T1IA 4FCXA 3TOEA 1HC7A 1NJ6A 4K86A 1NH9A 2H9UA 1NFHA 2M71A 4HVZA 3TTDA 2CRQA 1H4TA 4WI1A 1TIGA 4K88A 2LXRA 3P04A 2Y1BA 1S8EA 3U6YA 3IABB 4YKEA 1PAVA 1UDVA 2EK0A 4K87A 3TSUA 1NJ5A 2GTCA 1NJ1A 2BKYX 3DSCA 2P9BA 1NJ2A 4NZTM 4NZRM 3DSDA 3LVKB 2L8YA 1VM0A 3ZIIA 4FBWA 1H0YA 3TTCA 2Z7CA 3ZIGA 4Q15A 4FBQA 1II7A 1H4QA 3VTIA 1NFJA 1RQ8A
chains in the Genus database with same CATH topology
2CRQA 2M71A 1TIGA 2IFEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CRQ A;  2M71 A;  1TIG A;  2IFE A; 
#chains in the Genus database with same CATH topology
 4OLF A;  4HD0 A;  1Y9X A;  4TWA A;  1LN4 A;  4YDQ A;  1JO0 A;  1VR4 A;  1JE3 A;  1H4S A;  3HZ7 A;  3WBM A;  4HVC A;  4EO0 A;  3LVJ C;  1XEZ A;  3IAL A;  1H0X A;  2IFE A;  3ZIH A;  3TTF A;  2A2Y A;  4FBK A;  3ZIE A;  3TSP A;  1NJ8 A;  3QKB A;  4NCX A;  3VTH A;  1DCJ A;  2LN3 A;  1Y2I A;  2EH1 A;  3TSQ A;  2Q3V A;  4Z9E A;  3IAB A;  1JDQ A;  3T1I A;  4FCX A;  3TOE A;  1HC7 A;  1NJ6 A;  4K86 A;  1NH9 A;  2H9U A;  1NFH A;  2M71 A;  4HVZ A;  3TTD A;  2CRQ A;  1H4T A;  4WI1 A;  1TIG A;  4K88 A;  2LXR A;  3P04 A;  2Y1B A;  1S8E A;  3U6Y A;  3IAB B;  4YKE A;  1PAV A;  1UDV A;  2EK0 A;  4K87 A;  3TSU A;  1NJ5 A;  2GTC A;  1NJ1 A;  2BKY X;  3DSC A;  2P9B A;  1NJ2 A;  4NZT M;  4NZR M;  3DSD A;  3LVK B;  2L8Y A;  1VM0 A;  3ZII A;  4FBW A;  1H0Y A;  3TTC A;  2Z7C A;  3ZIG A;  4Q15 A;  4FBQ A;  1II7 A;  1H4Q A;  3VTI A;  1NFJ A;  1RQ8 A; 
#chains in the Genus database with same CATH homology
 2CRQ A;  2M71 A;  1TIG A;  2IFE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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