2CTKA

Solution structure of the 12th kh type i domain from human vigilin
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
104
structure length
104
Chain Sequence
GSSGSSGKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein, rna binding protein
molecule keywords Vigilin
publication title Solution structure of the 12th KH type I domain from human Vigilin
rcsb
source organism Homo sapiens
total genus 23
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2005-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2ctkA00
2E3UA 2JE6I 5C0XG 1X4MA 2DGRA 2MJHA 1ZZIA 1X4NA 4AIMA 1VIHA 2CPQA 2PY9A 4BA2I 2OPVA 2PQUA 2FMRA 2CTLA 1ZZJA 1KHMA 5JEAG 2AXYA 2QNDA 2ANNA 3AEVB 2HH3A 2YQRA 1J5KA 3V69A 1J4WA 2JZXA 2JEAI 3U1KA 2NN6G 2CTEA 2OPUA 2JA9A 4WANA 1ZTGA 1ZZKA 4JVYA 2JEBI 4NBQA 2BL5A 1DTJA 1VIGA 2CTJA 2CTFA 4QMFB 2JVZA 2BA0A 2HH2A 1WVNA 3L7ZC 4BA1I 1EC6A 4WALA 4LIJA 1DT4A 2ANRA 4JVHA 3VKEA 4B8TA 4IFDG 2P2RA 5K36G 1TUAA 2CTKA 1WE8A 1K1GA 4OO1G 2Z0SA 4AM3A 2CTMA
chains in the Genus database with same CATH superfamily
3T1YH 4LF9H 1ZZIA 3T1HH 3OTOH 1N32H 1XMQH 1VBIA 3J80W 5JEAG 1KHMA 2AXYA 4DV2H 4JI8H 2K1HA 5IWAH 1N33H 2NN6G 2CTEA 2UXCH 2ZQEA 1ZTGA 2UUBH 4LFCH 4OX9H 2BL5A 3GABA 3FAUA 1X0AA 2JVZA 3QD7X 1S03G 3JAMW 4WALA 4JI3H 4JI4H 4JI6H 1IBKH 1HNZH 1PQXA 3GR5A 4B8TA 3VKEA 2M6QA 4DV0H 5K36G 3J81W 3EZJA 4DV1H 2PT7G 1XMOH 1XRHA 1MSZA 4DR3H 2CTMA 4OD6A 4JV5H 4DR6H 1SEIA 1X4MA 2DGRA 2PY9A 4E9JA 1VIHA 2PQUA 2VKCA 4K0KH 2CTLA 2LTMA 2QNDA 4EC5A 2M8WA 3NCVA 3OSSD 1N34H 3V69A 4X66H 2JZXA 2UXBH 2JEBI 4B3SH 4NBQA 4LF5H 2CTJA 1VIGA 2CTFA 4QMFB 4LF8H 2F4VH 5LMNH 4BA1I 2UU9H 1HNWH 4KHPH 4LIJA 5A2QW 1DT4A 2ANRA 4LF7H 4DUYH 2O4CA 1S20A 4H8AA 4NZRM 4JVHA 3J7AK 1X9ZA 2VQFH 4IFDG 2HHHH 1V8CA 1N36H 2ANNA 4B3RH 2CPMA 1HNXH 4B3TH 5C0XG 1I6UA 4B8CD 1I94H 2MJHA 4LFAH 4AIMA 3KDKA 4BA2I 1NXUA 2OPVA 1FJGH 2FMRA 3KDGA 4X62H 1ZZJA 5FLXW 3AEVB 2G8YA 2HH3A 2YQRA 4NZTM 3SB1A 4GKJH 4DV5H 4PDBA 4JI1H 4YY3H 2CWHA 4DR5H 2JEAI 4FJUA 3U1KA 2OPUA 2Y3MA 2X06A 2JA9A 4OCHA 5BR8H 1ZZKA 4WANA 4DUZH 4NXNH 2LTLA 4JI5H 1DTJA 4JI2H 4JYAH 1V9NA 4YHHH 4NXMH 1UG8A 4X65H 2E5LH 1IBMH 2CTKA 1K1GA 4AQYH 2Z0SA 4DV7H 1FKAH 4AM3A 1EC6A 2E3UA 2JE6I 2ZM6H 3UOEA 4JI7H 1X4NA 2CPQA 4FJSA 2UUAH 1HR0H 1J5EH 5IT9W 1ODHA 1IBLH 4DV4H 1J5KA 4DR7H 5LL6b 4LF6H 2FFMA 2FPHX 1J4WA 3GKUA 4LFBH 4G08A 4DV6H 1WTJA 5LMUH 2UUCH 3OETA 4LF4H 4DR4H 4JVYA 1F0XA 4X64H 1XNRH 1Z2IA 2A1SA 4B3MH 3RF2A 3I0PA 2BA0A 2HH2A 4DR2H 1WVNA 3L7ZC 4DR1H 4DV3H 2LRRA 4GKKH 1WHRA 2VQEH 2P2RA 2CWFA 2LF0A 1TUAA 5DT9A 1AN7A 4JI0H 1WE8A 2D9IA 4OO1G 2UXDH 1XNQH
chains in the Genus database with same CATH topology
2E3UA 2JE6I 5C0XG 1X4MA 2DGRA 2MJHA 1ZZIA 1X4NA 4AIMA 1VIHA 2CPQA 2PY9A 4BA2I 2OPVA 2PQUA 2FMRA 2CTLA 1ZZJA 1KHMA 5JEAG 2AXYA 2QNDA 2ANNA 3AEVB 2HH3A 2YQRA 1J5KA 3V69A 1J4WA 2JZXA 2JEAI 3U1KA 2NN6G 2CTEA 2OPUA 2JA9A 4WANA 1ZTGA 1ZZKA 4JVYA 2JEBI 4NBQA 2BL5A 1DTJA 1VIGA 2CTJA 2CTFA 4QMFB 2JVZA 2BA0A 2HH2A 1WVNA 3L7ZC 4BA1I 1EC6A 4WALA 4LIJA 1DT4A 2ANRA 4JVHA 3VKEA 4B8TA 4IFDG 2P2RA 5K36G 1TUAA 2CTKA 1WE8A 1K1GA 4OO1G 2Z0SA 4AM3A 2CTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E3U A;  2JE6 I;  5C0X G;  1X4M A;  2DGR A;  2MJH A;  1ZZI A;  1X4N A;  4AIM A;  1VIH A;  2CPQ A;  2PY9 A;  4BA2 I;  2OPV A;  2PQU A;  2FMR A;  2CTL A;  1ZZJ A;  1KHM A;  5JEA G;  2AXY A;  2QND A;  2ANN A;  3AEV B;  2HH3 A;  2YQR A;  1J5K A;  3V69 A;  1J4W A;  2JZX A;  2JEA I;  3U1K A;  2NN6 G;  2CTE A;  2OPU A;  2JA9 A;  4WAN A;  1ZTG A;  1ZZK A;  4JVY A;  2JEB I;  4NBQ A;  2BL5 A;  1DTJ A;  1VIG A;  2CTJ A;  2CTF A;  4QMF B;  2JVZ A;  2BA0 A;  2HH2 A;  1WVN A;  3L7Z C;  4BA1 I;  1EC6 A;  4WAL A;  4LIJ A;  1DT4 A;  2ANR A;  4JVH A;  3VKE A;  4B8T A;  4IFD G;  2P2R A;  5K36 G;  1TUA A;  2CTK A;  1WE8 A;  1K1G A;  4OO1 G;  2Z0S A;  4AM3 A;  2CTM A; 
#chains in the Genus database with same CATH topology
 3T1Y H;  4LF9 H;  1ZZI A;  3T1H H;  3OTO H;  1N32 H;  1XMQ H;  1VBI A;  3J80 W;  5JEA G;  1KHM A;  2AXY A;  4DV2 H;  4JI8 H;  2K1H A;  5IWA H;  1N33 H;  2NN6 G;  2CTE A;  2UXC H;  2ZQE A;  1ZTG A;  2UUB H;  4LFC H;  4OX9 H;  2BL5 A;  3GAB A;  3FAU A;  1X0A A;  2JVZ A;  3QD7 X;  1S03 G;  3JAM W;  4WAL A;  4JI3 H;  4JI4 H;  4JI6 H;  1IBK H;  1HNZ H;  1PQX A;  3GR5 A;  4B8T A;  3VKE A;  2M6Q A;  4DV0 H;  5K36 G;  3J81 W;  3EZJ A;  4DV1 H;  2PT7 G;  1XMO H;  1XRH A;  1MSZ A;  4DR3 H;  2CTM A;  4OD6 A;  4JV5 H;  4DR6 H;  1SEI A;  1X4M A;  2DGR A;  2PY9 A;  4E9J A;  1VIH A;  2PQU A;  2VKC A;  4K0K H;  2CTL A;  2LTM A;  2QND A;  4EC5 A;  2M8W A;  3NCV A;  3OSS D;  1N34 H;  3V69 A;  4X66 H;  2JZX A;  2UXB H;  2JEB I;  4B3S H;  4NBQ A;  4LF5 H;  2CTJ A;  1VIG A;  2CTF A;  4QMF B;  4LF8 H;  2F4V H;  5LMN H;  4BA1 I;  2UU9 H;  1HNW H;  4KHP H;  4LIJ A;  5A2Q W;  1DT4 A;  2ANR A;  4LF7 H;  4DUY H;  2O4C A;  1S20 A;  4H8A A;  4NZR M;  4JVH A;  3J7A K;  1X9Z A;  2VQF H;  4IFD G;  2HHH H;  1V8C A;  1N36 H;  2ANN A;  4B3R H;  2CPM A;  1HNX H;  4B3T H;  5C0X G;  1I6U A;  4B8C D;  1I94 H;  2MJH A;  4LFA H;  4AIM A;  3KDK A;  4BA2 I;  1NXU A;  2OPV A;  1FJG H;  2FMR A;  3KDG A;  4X62 H;  1ZZJ A;  5FLX W;  3AEV B;  2G8Y A;  2HH3 A;  2YQR A;  4NZT M;  3SB1 A;  4GKJ H;  4DV5 H;  4PDB A;  4JI1 H;  4YY3 H;  2CWH A;  4DR5 H;  2JEA I;  4FJU A;  3U1K A;  2OPU A;  2Y3M A;  2X06 A;  2JA9 A;  4OCH A;  5BR8 H;  1ZZK A;  4WAN A;  4DUZ H;  4NXN H;  2LTL A;  4JI5 H;  1DTJ A;  4JI2 H;  4JYA H;  1V9N A;  4YHH H;  4NXM H;  1UG8 A;  4X65 H;  2E5L H;  1IBM H;  2CTK A;  1K1G A;  4AQY H;  2Z0S A;  4DV7 H;  1FKA H;  4AM3 A;  1EC6 A;  2E3U A;  2JE6 I;  2ZM6 H;  3UOE A;  4JI7 H;  1X4N A;  2CPQ A;  4FJS A;  2UUA H;  1HR0 H;  1J5E H;  5IT9 W;  1ODH A;  1IBL H;  4DV4 H;  1J5K A;  4DR7 H;  5LL6 b;  4LF6 H;  2FFM A;  2FPH X;  1J4W A;  3GKU A;  4LFB H;  4G08 A;  4DV6 H;  1WTJ A;  5LMU H;  2UUC H;  3OET A;  4LF4 H;  4DR4 H;  4JVY A;  1F0X A;  4X64 H;  1XNR H;  1Z2I A;  2A1S A;  4B3M H;  3RF2 A;  3I0P A;  2BA0 A;  2HH2 A;  4DR2 H;  1WVN A;  3L7Z C;  4DR1 H;  4DV3 H;  2LRR A;  4GKK H;  1WHR A;  2VQE H;  2P2R A;  2CWF A;  2LF0 A;  1TUA A;  5DT9 A;  1AN7 A;  4JI0 H;  1WE8 A;  2D9I A;  4OO1 G;  2UXD H;  1XNQ H; 
#chains in the Genus database with same CATH homology
 2E3U A;  2JE6 I;  5C0X G;  1X4M A;  2DGR A;  2MJH A;  1ZZI A;  1X4N A;  4AIM A;  1VIH A;  2CPQ A;  2PY9 A;  4BA2 I;  2OPV A;  2PQU A;  2FMR A;  2CTL A;  1ZZJ A;  1KHM A;  5JEA G;  2AXY A;  2QND A;  2ANN A;  3AEV B;  2HH3 A;  2YQR A;  1J5K A;  3V69 A;  1J4W A;  2JZX A;  2JEA I;  3U1K A;  2NN6 G;  2CTE A;  2OPU A;  2JA9 A;  4WAN A;  1ZTG A;  1ZZK A;  4JVY A;  2JEB I;  4NBQ A;  2BL5 A;  1DTJ A;  1VIG A;  2CTJ A;  2CTF A;  4QMF B;  2JVZ A;  2BA0 A;  2HH2 A;  1WVN A;  3L7Z C;  4BA1 I;  1EC6 A;  4WAL A;  4LIJ A;  1DT4 A;  2ANR A;  4JVH A;  3VKE A;  4B8T A;  4IFD G;  2P2R A;  5K36 G;  1TUA A;  2CTK A;  1WE8 A;  1K1G A;  4OO1 G;  2Z0S A;  4AM3 A;  2CTM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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