2CTOA

Solution structure of the hmg box like domain from human hypothetical protein flj14904
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
93
structure length
93
Chain Sequence
GSSGSSGMPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGPSEKQKPVFTSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords novel protein
publication title Solution structure of the HMG box like domain from human hypothetical protein FLJ14904
rcsb
source organism Homo sapiens
total genus 16
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2005-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09011 HMG_box_2 HMG-box domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 2ctoA01
4EUWA 1HRZA 1E7JA 2CS1A 2LE4A 1J3CA 2CTOA 1LWMA 2HDZA 3F27D 1J46A 4QR9A 4NNUA 2D7LA 1NHNA 1QRVA 2YUKA 2EQZA 1O4XB 1J3XA 4S2QD 1HMEA 1K99A 3U2BC 1V64A 2RTUA 2E6OA 1HSMA 1HRYA 1J3DA 1HMAA 4NODA 2LHJA 1WGFA 3FGHA 1WZ6A 1NHMA 1I11A 1WXLA 1CG7A 2YRQA 4Y60C 1V63A 3TQ6A 1L8YA 1CKTA 1AABA 2YULA 3TMMA 1GT0D 1L8ZA 4A3NA 1J5NA 3NM9A 2GZKA 2LY4A 2LEFA 1HSNA 2YQIA 1HMFA 2CRJA 2CO9A 1J47A
chains in the Genus database with same CATH superfamily
4EUWA 1HRZA 1E7JA 2CS1A 2LE4A 1J3CA 2CTOA 1LWMA 2HDZA 3F27D 1J46A 4QR9A 3AO0B 4KQEA 4NNUA 2D7LA 1NHNA 1QRVA 2YUKA 2EQZA 3ABRB 1J47A 1O4XB 1J3XA 4S2QD 1HMEA 1K99A 3U2BC 1V64A 2RTUA 2E6OA 1HSMA 1HRYA 1J3DA 3ABOB 1HMAA 4NODA 2LHJA 5H8WA 1WGFA 3FGHA 1WZ6A 1NHMA 1I11A 1WXLA 1CG7A 2YRQA 4Y60C 1V63A 3TQ6A 1L8YA 4A15A 2VSFA 1CKTA 1AABA 2YULA 3ABSB 3TMMA 1GT0D 1L8ZA 4A3NA 1J5NA 3NM9A 2GZKA 2LY4A 2LEFA 1HSNA 2YQIA 1HMFA 2CRJA 2CO9A 3ANYB
chains in the Genus database with same CATH topology
4EUWA 1HRZA 1E7JA 2CS1A 2LE4A 1J3CA 2CTOA 1LWMA 2HDZA 3F27D 1J46A 4QR9A 4NNUA 2D7LA 1NHNA 1QRVA 2YUKA 2EQZA 1O4XB 1J3XA 4S2QD 1HMEA 1K99A 3U2BC 1V64A 2RTUA 2E6OA 1HSMA 1HRYA 1J3DA 1HMAA 4NODA 2LHJA 1WGFA 3FGHA 1WZ6A 1NHMA 1I11A 1WXLA 1CG7A 2YRQA 4Y60C 1V63A 3TQ6A 1L8YA 1CKTA 1AABA 2YULA 3TMMA 1GT0D 1L8ZA 4A3NA 1J5NA 3NM9A 2GZKA 2LY4A 2LEFA 1HSNA 2YQIA 1HMFA 2CRJA 2CO9A 1J47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EUW A;  1HRZ A;  1E7J A;  2CS1 A;  2LE4 A;  1J3C A;  2CTO A;  1LWM A;  2HDZ A;  3F27 D;  1J46 A;  4QR9 A;  4NNU A;  2D7L A;  1NHN A;  1QRV A;  2YUK A;  2EQZ A;  1O4X B;  1J3X A;  4S2Q D;  1HME A;  1K99 A;  3U2B C;  1V64 A;  2RTU A;  2E6O A;  1HSM A;  1HRY A;  1J3D A;  1HMA A;  4NOD A;  2LHJ A;  1WGF A;  3FGH A;  1WZ6 A;  1NHM A;  1I11 A;  1WXL A;  1CG7 A;  2YRQ A;  4Y60 C;  1V63 A;  3TQ6 A;  1L8Y A;  1CKT A;  1AAB A;  2YUL A;  3TMM A;  1GT0 D;  1L8Z A;  4A3N A;  1J5N A;  3NM9 A;  2GZK A;  2LY4 A;  2LEF A;  1HSN A;  2YQI A;  1HMF A;  2CRJ A;  2CO9 A;  1J47 A; 
#chains in the Genus database with same CATH topology
 4EUW A;  1HRZ A;  1E7J A;  2CS1 A;  2LE4 A;  1J3C A;  2CTO A;  1LWM A;  2HDZ A;  3F27 D;  1J46 A;  4QR9 A;  3AO0 B;  4KQE A;  4NNU A;  2D7L A;  1NHN A;  1QRV A;  2YUK A;  2EQZ A;  3ABR B;  1J47 A;  1O4X B;  1J3X A;  4S2Q D;  1HME A;  1K99 A;  3U2B C;  1V64 A;  2RTU A;  2E6O A;  1HSM A;  1HRY A;  1J3D A;  3ABO B;  1HMA A;  4NOD A;  2LHJ A;  5H8W A;  1WGF A;  3FGH A;  1WZ6 A;  1NHM A;  1I11 A;  1WXL A;  1CG7 A;  2YRQ A;  4Y60 C;  1V63 A;  3TQ6 A;  1L8Y A;  4A15 A;  2VSF A;  1CKT A;  1AAB A;  2YUL A;  3ABS B;  3TMM A;  1GT0 D;  1L8Z A;  4A3N A;  1J5N A;  3NM9 A;  2GZK A;  2LY4 A;  2LEF A;  1HSN A;  2YQI A;  1HMF A;  2CRJ A;  2CO9 A;  3ANY B; 
#chains in the Genus database with same CATH homology
 4EUW A;  1HRZ A;  1E7J A;  2CS1 A;  2LE4 A;  1J3C A;  2CTO A;  1LWM A;  2HDZ A;  3F27 D;  1J46 A;  4QR9 A;  4NNU A;  2D7L A;  1NHN A;  1QRV A;  2YUK A;  2EQZ A;  1O4X B;  1J3X A;  4S2Q D;  1HME A;  1K99 A;  3U2B C;  1V64 A;  2RTU A;  2E6O A;  1HSM A;  1HRY A;  1J3D A;  1HMA A;  4NOD A;  2LHJ A;  1WGF A;  3FGH A;  1WZ6 A;  1NHM A;  1I11 A;  1WXL A;  1CG7 A;  2YRQ A;  4Y60 C;  1V63 A;  3TQ6 A;  1L8Y A;  1CKT A;  1AAB A;  2YUL A;  3TMM A;  1GT0 D;  1L8Z A;  4A3N A;  1J5N A;  3NM9 A;  2GZK A;  2LY4 A;  2LEF A;  1HSN A;  2YQI A;  1HMF A;  2CRJ A;  2CO9 A;  1J47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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