2CV9A

Crystal structure of a hypothetical protein from thermus thermophilus hb8
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
252
structure length
252
Chain Sequence
MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein TTHA0625
publication title Crystal structure of a hypothetical protein from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Structural genomics, unknown function
total genus 71
structure length 252
sequence length 252
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13277 YmdB YmdB-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2cv9A00
4O4KA 2Q8UA 3THNA 1S95A 2IAEC 5EQVA 2BDXA 1S3NA 2Z72A 1OIEA 3ICFA 1HPUA 3LL8A 2HYOA 3K7VC 3IB7A 1UTEA 3AUZA 4TUIA 2WDCA 4F0ZA 1Z2XA 3EGHA 1XM7A 1QFCA 1M63A 2QJCA 3HVQA 3PSOA 3ZU0A 1WAO1 2KKNA 4H2IA 4H1YP 2XMOA 4ZVZA 5JJTA 1S70A 3H67A 1G5BA 1UF3A 1WARA 1IT6A 2QFPA 1Z2WA 3H61A 4UWQA 1S3LA 1QHWA 2Z06A 1U32A 3P71C 2IE4C 1OI8A 3DSCA 4V0WA 4H2GA 4DT2A 1NNWA 2ZBMA 1S3MA 3AV0A 3FGAC 4V0XA 1HO5A 1II7A 2DFJA 3THOB 2JOGA 3N5UA 5F3WA 3H69A 1V73A 4I5LC 4V0VA 2IE3C 3QFOA 2CV9A 3E7BA 4FCXA 4NZVA 5DNYA 1HP1A 3ZTVA 3H62B 4M0VA 4JA7A 4OR9A 5GTUA 5INBA 4UT3B 4I5NC 4O5GA 3H68A 1JK7A 3H60A 4O24A 3DW8C 1T71A 3C9FA 4LACC 4DHLA 4XPNA 3RL4A 2QFRA 3H63A 3T1IA 3C5WC 3K7WC 2WDDA 4FBWA 4KKZA 3RQZA 2YVTA 2HYPA 3DSDA 4MP0A 3H64A 5B8IA 3IVEA 4ORCA 4ORAA 4J6OA 3V4YA 3QFKA 3QFMA 4UT3A 3IB8A 5JPEA 4G9JA 2USHA 1KBPA 1T70A 2NYLC 3PSNA 4UT2A 3H66A 1S8EA 2R17A 4LU9A 1FJMA 5J28A 3IVDA 4FBKA 4LTYA 1AUIA 4MOVA 4KBPA 3E7AA 4FBQA 4H2BA 4H1SA 3GVEA 4YKEA 5C1VA 2HY1A 1XZWA 3KBPA 4JA9A 2P6BA 2BCDA 2Z1AA 2NPPC 4IYPC 3QFNA 1SU1A 3CK2A 4WWLA 1MF8A 4MOYA 4Q7FA 1OIDA 2O8AA 3EGGA 2WDEA 2GJUA 2NXFA 3RL5A 1W24A 1TCOA 3RL3A 1USHA 2AHDA 4O43A 2WDFA 4TUGA 4ZX2A 3JYFA 4DSYA 2NYMC 5JPFA 2A22A 4H2FA 4ORBA 2O8GA 5HPEA 5IOHA 4B2OA 4IL1A 2BQ8X 3QG5C 4HD0A 3TGHA
chains in the Genus database with same CATH superfamily
4O4KA 2Q8UA 3THNA 1S95A 2IAEC 5EQVA 2BDXA 1S3NA 2Z72A 1OIEA 3ICFA 2DXNA 1HPUA 3LL8A 2HYOA 3K7VC 3IB7A 1UTEA 3AUZA 4TUIA 2WDCA 4F0ZA 2ZO9B 1Z2XA 3EGHA 1XM7A 1QFCA 1M63A 2QJCA 3HVQA 3PSOA 3ZU0A 1WAO1 2KKNA 4H2IA 4H1YP 2XMOA 4ZVZA 5JJTA 1S70A 3H67A 1G5BA 1UF3A 1WARA 1IT6A 2QFPA 1Z2WA 3H61A 4UWQA 1S3LA 1QHWA 2Z06A 1U32A 3P71C 2IE4C 1OI8A 3DSCA 4V0WA 4H2GA 4DT2A 1NNWA 2ZBMA 1S3MA 3AV0A 3FGAC 4V0XA 1HO5A 1II7A 2DFJA 3THOB 2JOGA 3N5UA 5F3WA 3H69A 1V73A 4I5LC 4V0VA 2IE3C 3QFOA 2CV9A 3E7BA 4FCXA 4NZVA 5DNYA 1HP1A 3ZTVA 3H62B 4M0VA 4JA7A 4OR9A 3E0JA 5GTUA 5INBA 4UT3B 4I5NC 4O5GA 3H68A 2YEQA 1JK7A 3H60A 4O24A 3DW8C 1T71A 3C9FA 4LACC 4DHLA 4XPNA 3RL4A 2QFRA 3H63A 3T1IA 3C5WC 3K7WC 2WDDA 4FBWA 4KKZA 3RQZA 2YVTA 2HYPA 3DSDA 4MP0A 3H64A 5B8IA 3IVEA 4ORCA 4ORAA 4J6OA 3V4YA 3QFKA 3QFMA 3FLOA 4UT3A 3IB8A 5JPEA 4G9JA 2USHA 1KBPA 1T70A 2NYLC 3PSNA 4UT2A 3H66A 1S8EA 2R17A 4LU9A 1FJMA 5J28A 3IVDA 4FBKA 4LTYA 1AUIA 4MOVA 4KBPA 2DXLA 3E7AA 4FBQA 4H2BA 4H1SA 3GVEA 4YKEA 5C1VA 2HY1A 1XZWA 3KBPA 4JA9A 2P6BA 2BCDA 2Z1AA 2NPPC 4IYPC 3QFNA 1SU1A 3CK2A 4WWLA 1MF8A 4MOYA 4Q7FA 1OIDA 2O8AA 2ZOAA 2WDEA 3D03A 3EGGA 2GJUA 2NXFA 3RL5A 1W24A 1TCOA 3RL3A 1USHA 2AHDA 4O43A 2WDFA 4TUGA 4ZX2A 3JYFA 4DSYA 2NYMC 5JPFA 2A22A 4H2FA 4ORBA 2O8GA 5HPEA 5IOHA 4B2OA 4IL1A 2BQ8X 3QG5C 4HD0A 3TGHA
chains in the Genus database with same CATH topology
4O4KA 2Q8UA 3THNA 1S95A 2IAEC 5EQVA 2BDXA 1S3NA 2Z72A 1OIEA 3ICFA 2DXNA 1HPUA 3LL8A 2HYOA 3K7VC 3IB7A 1UTEA 3AUZA 4TUIA 2WDCA 4F0ZA 2ZO9B 1Z2XA 3EGHA 1XM7A 1QFCA 1M63A 2QJCA 3HVQA 3PSOA 3ZU0A 1WAO1 2KKNA 4H2IA 4H1YP 2XMOA 4ZVZA 5JJTA 1S70A 3H67A 1G5BA 1UF3A 1WARA 1IT6A 2QFPA 1Z2WA 3H61A 4UWQA 1S3LA 1QHWA 2Z06A 1U32A 3P71C 2IE4C 1OI8A 3DSCA 4V0WA 4H2GA 4DT2A 1NNWA 2ZBMA 1S3MA 3AV0A 3FGAC 4V0XA 1HO5A 1II7A 2DFJA 3THOB 2JOGA 3N5UA 5F3WA 3H69A 1V73A 4I5LC 4V0VA 2IE3C 3QFOA 2CV9A 3E7BA 4FCXA 4NZVA 5DNYA 1HP1A 3ZTVA 3H62B 4M0VA 4JA7A 4OR9A 3E0JA 5GTUA 5INBA 4UT3B 4I5NC 4O5GA 3H68A 2YEQA 1JK7A 3H60A 4O24A 3DW8C 1T71A 3C9FA 4LACC 4DHLA 4XPNA 3RL4A 2QFRA 3H63A 3T1IA 3C5WC 3K7WC 2WDDA 4FBWA 4KKZA 3RQZA 2YVTA 2HYPA 3DSDA 4MP0A 3H64A 5B8IA 3IVEA 4ORCA 4ORAA 4J6OA 3V4YA 3QFKA 3QFMA 3FLOA 4UT3A 3IB8A 5JPEA 4G9JA 2USHA 1KBPA 1T70A 2NYLC 3PSNA 4UT2A 3H66A 1S8EA 2R17A 4LU9A 1FJMA 5J28A 3IVDA 4FBKA 4LTYA 1AUIA 4MOVA 4KBPA 2DXLA 3E7AA 4FBQA 4H2BA 4H1SA 3GVEA 4YKEA 5C1VA 2HY1A 1XZWA 3KBPA 4JA9A 2P6BA 2BCDA 2Z1AA 2NPPC 4IYPC 3QFNA 1SU1A 3CK2A 4WWLA 1MF8A 4MOYA 4Q7FA 1OIDA 2O8AA 2ZOAA 2WDEA 3D03A 3EGGA 2GJUA 2NXFA 3RL5A 1W24A 1TCOA 3RL3A 1USHA 2AHDA 4O43A 2WDFA 4TUGA 4ZX2A 3JYFA 4DSYA 2NYMC 5JPFA 2A22A 4H2FA 4ORBA 2O8GA 5HPEA 5IOHA 4B2OA 4IL1A 2BQ8X 3QG5C 4HD0A 3TGHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O4K A;  2Q8U A;  3THN A;  1S95 A;  2IAE C;  5EQV A;  2BDX A;  1S3N A;  2Z72 A;  1OIE A;  3ICF A;  1HPU A;  3LL8 A;  2HYO A;  3K7V C;  3IB7 A;  1UTE A;  3AUZ A;  4TUI A;  2WDC A;  4F0Z A;  1Z2X A;  3EGH A;  1XM7 A;  1QFC A;  1M63 A;  2QJC A;  3HVQ A;  3PSO A;  3ZU0 A;  1WAO 1;  2KKN A;  4H2I A;  4H1Y P;  2XMO A;  4ZVZ A;  5JJT A;  1S70 A;  3H67 A;  1G5B A;  1UF3 A;  1WAR A;  1IT6 A;  2QFP A;  1Z2W A;  3H61 A;  4UWQ A;  1S3L A;  1QHW A;  2Z06 A;  1U32 A;  3P71 C;  2IE4 C;  1OI8 A;  3DSC A;  4V0W A;  4H2G A;  4DT2 A;  1NNW A;  2ZBM A;  1S3M A;  3AV0 A;  3FGA C;  4V0X A;  1HO5 A;  1II7 A;  2DFJ A;  3THO B;  2JOG A;  3N5U A;  5F3W A;  3H69 A;  1V73 A;  4I5L C;  4V0V A;  2IE3 C;  3QFO A;  2CV9 A;  3E7B A;  4FCX A;  4NZV A;  5DNY A;  1HP1 A;  3ZTV A;  3H62 B;  4M0V A;  4JA7 A;  4OR9 A;  5GTU A;  5INB A;  4UT3 B;  4I5N C;  4O5G A;  3H68 A;  1JK7 A;  3H60 A;  4O24 A;  3DW8 C;  1T71 A;  3C9F A;  4LAC C;  4DHL A;  4XPN A;  3RL4 A;  2QFR A;  3H63 A;  3T1I A;  3C5W C;  3K7W C;  2WDD A;  4FBW A;  4KKZ A;  3RQZ A;  2YVT A;  2HYP A;  3DSD A;  4MP0 A;  3H64 A;  5B8I A;  3IVE A;  4ORC A;  4ORA A;  4J6O A;  3V4Y A;  3QFK A;  3QFM A;  4UT3 A;  3IB8 A;  5JPE A;  4G9J A;  2USH A;  1KBP A;  1T70 A;  2NYL C;  3PSN A;  4UT2 A;  3H66 A;  1S8E A;  2R17 A;  4LU9 A;  1FJM A;  5J28 A;  3IVD A;  4FBK A;  4LTY A;  1AUI A;  4MOV A;  4KBP A;  3E7A A;  4FBQ A;  4H2B A;  4H1S A;  3GVE A;  4YKE A;  5C1V A;  2HY1 A;  1XZW A;  3KBP A;  4JA9 A;  2P6B A;  2BCD A;  2Z1A A;  2NPP C;  4IYP C;  3QFN A;  1SU1 A;  3CK2 A;  4WWL A;  1MF8 A;  4MOY A;  4Q7F A;  1OID A;  2O8A A;  3EGG A;  2WDE A;  2GJU A;  2NXF A;  3RL5 A;  1W24 A;  1TCO A;  3RL3 A;  1USH A;  2AHD A;  4O43 A;  2WDF A;  4TUG A;  4ZX2 A;  3JYF A;  4DSY A;  2NYM C;  5JPF A;  2A22 A;  4H2F A;  4ORB A;  2O8G A;  5HPE A;  5IOH A;  4B2O A;  4IL1 A;  2BQ8 X;  3QG5 C;  4HD0 A;  3TGH A; 
#chains in the Genus database with same CATH topology
 4O4K A;  2Q8U A;  3THN A;  1S95 A;  2IAE C;  5EQV A;  2BDX A;  1S3N A;  2Z72 A;  1OIE A;  3ICF A;  2DXN A;  1HPU A;  3LL8 A;  2HYO A;  3K7V C;  3IB7 A;  1UTE A;  3AUZ A;  4TUI A;  2WDC A;  4F0Z A;  2ZO9 B;  1Z2X A;  3EGH A;  1XM7 A;  1QFC A;  1M63 A;  2QJC A;  3HVQ A;  3PSO A;  3ZU0 A;  1WAO 1;  2KKN A;  4H2I A;  4H1Y P;  2XMO A;  4ZVZ A;  5JJT A;  1S70 A;  3H67 A;  1G5B A;  1UF3 A;  1WAR A;  1IT6 A;  2QFP A;  1Z2W A;  3H61 A;  4UWQ A;  1S3L A;  1QHW A;  2Z06 A;  1U32 A;  3P71 C;  2IE4 C;  1OI8 A;  3DSC A;  4V0W A;  4H2G A;  4DT2 A;  1NNW A;  2ZBM A;  1S3M A;  3AV0 A;  3FGA C;  4V0X A;  1HO5 A;  1II7 A;  2DFJ A;  3THO B;  2JOG A;  3N5U A;  5F3W A;  3H69 A;  1V73 A;  4I5L C;  4V0V A;  2IE3 C;  3QFO A;  2CV9 A;  3E7B A;  4FCX A;  4NZV A;  5DNY A;  1HP1 A;  3ZTV A;  3H62 B;  4M0V A;  4JA7 A;  4OR9 A;  3E0J A;  5GTU A;  5INB A;  4UT3 B;  4I5N C;  4O5G A;  3H68 A;  2YEQ A;  1JK7 A;  3H60 A;  4O24 A;  3DW8 C;  1T71 A;  3C9F A;  4LAC C;  4DHL A;  4XPN A;  3RL4 A;  2QFR A;  3H63 A;  3T1I A;  3C5W C;  3K7W C;  2WDD A;  4FBW A;  4KKZ A;  3RQZ A;  2YVT A;  2HYP A;  3DSD A;  4MP0 A;  3H64 A;  5B8I A;  3IVE A;  4ORC A;  4ORA A;  4J6O A;  3V4Y A;  3QFK A;  3QFM A;  3FLO A;  4UT3 A;  3IB8 A;  5JPE A;  4G9J A;  2USH A;  1KBP A;  1T70 A;  2NYL C;  3PSN A;  4UT2 A;  3H66 A;  1S8E A;  2R17 A;  4LU9 A;  1FJM A;  5J28 A;  3IVD A;  4FBK A;  4LTY A;  1AUI A;  4MOV A;  4KBP A;  2DXL A;  3E7A A;  4FBQ A;  4H2B A;  4H1S A;  3GVE A;  4YKE A;  5C1V A;  2HY1 A;  1XZW A;  3KBP A;  4JA9 A;  2P6B A;  2BCD A;  2Z1A A;  2NPP C;  4IYP C;  3QFN A;  1SU1 A;  3CK2 A;  4WWL A;  1MF8 A;  4MOY A;  4Q7F A;  1OID A;  2O8A A;  2ZOA A;  2WDE A;  3D03 A;  3EGG A;  2GJU A;  2NXF A;  3RL5 A;  1W24 A;  1TCO A;  3RL3 A;  1USH A;  2AHD A;  4O43 A;  2WDF A;  4TUG A;  4ZX2 A;  3JYF A;  4DSY A;  2NYM C;  5JPF A;  2A22 A;  4H2F A;  4ORB A;  2O8G A;  5HPE A;  5IOH A;  4B2O A;  4IL1 A;  2BQ8 X;  3QG5 C;  4HD0 A;  3TGH A; 
#chains in the Genus database with same CATH homology
 4O4K A;  2Q8U A;  3THN A;  1S95 A;  2IAE C;  5EQV A;  2BDX A;  1S3N A;  2Z72 A;  1OIE A;  3ICF A;  2DXN A;  1HPU A;  3LL8 A;  2HYO A;  3K7V C;  3IB7 A;  1UTE A;  3AUZ A;  4TUI A;  2WDC A;  4F0Z A;  2ZO9 B;  1Z2X A;  3EGH A;  1XM7 A;  1QFC A;  1M63 A;  2QJC A;  3HVQ A;  3PSO A;  3ZU0 A;  1WAO 1;  2KKN A;  4H2I A;  4H1Y P;  2XMO A;  4ZVZ A;  5JJT A;  1S70 A;  3H67 A;  1G5B A;  1UF3 A;  1WAR A;  1IT6 A;  2QFP A;  1Z2W A;  3H61 A;  4UWQ A;  1S3L A;  1QHW A;  2Z06 A;  1U32 A;  3P71 C;  2IE4 C;  1OI8 A;  3DSC A;  4V0W A;  4H2G A;  4DT2 A;  1NNW A;  2ZBM A;  1S3M A;  3AV0 A;  3FGA C;  4V0X A;  1HO5 A;  1II7 A;  2DFJ A;  3THO B;  2JOG A;  3N5U A;  5F3W A;  3H69 A;  1V73 A;  4I5L C;  4V0V A;  2IE3 C;  3QFO A;  2CV9 A;  3E7B A;  4FCX A;  4NZV A;  5DNY A;  1HP1 A;  3ZTV A;  3H62 B;  4M0V A;  4JA7 A;  4OR9 A;  3E0J A;  5GTU A;  5INB A;  4UT3 B;  4I5N C;  4O5G A;  3H68 A;  2YEQ A;  1JK7 A;  3H60 A;  4O24 A;  3DW8 C;  1T71 A;  3C9F A;  4LAC C;  4DHL A;  4XPN A;  3RL4 A;  2QFR A;  3H63 A;  3T1I A;  3C5W C;  3K7W C;  2WDD A;  4FBW A;  4KKZ A;  3RQZ A;  2YVT A;  2HYP A;  3DSD A;  4MP0 A;  3H64 A;  5B8I A;  3IVE A;  4ORC A;  4ORA A;  4J6O A;  3V4Y A;  3QFK A;  3QFM A;  3FLO A;  4UT3 A;  3IB8 A;  5JPE A;  4G9J A;  2USH A;  1KBP A;  1T70 A;  2NYL C;  3PSN A;  4UT2 A;  3H66 A;  1S8E A;  2R17 A;  4LU9 A;  1FJM A;  5J28 A;  3IVD A;  4FBK A;  4LTY A;  1AUI A;  4MOV A;  4KBP A;  2DXL A;  3E7A A;  4FBQ A;  4H2B A;  4H1S A;  3GVE A;  4YKE A;  5C1V A;  2HY1 A;  1XZW A;  3KBP A;  4JA9 A;  2P6B A;  2BCD A;  2Z1A A;  2NPP C;  4IYP C;  3QFN A;  1SU1 A;  3CK2 A;  4WWL A;  1MF8 A;  4MOY A;  4Q7F A;  1OID A;  2O8A A;  2ZOA A;  2WDE A;  3D03 A;  3EGG A;  2GJU A;  2NXF A;  3RL5 A;  1W24 A;  1TCO A;  3RL3 A;  1USH A;  2AHD A;  4O43 A;  2WDF A;  4TUG A;  4ZX2 A;  3JYF A;  4DSY A;  2NYM C;  5JPF A;  2A22 A;  4H2F A;  4ORB A;  2O8G A;  5HPE A;  5IOH A;  4B2O A;  4IL1 A;  2BQ8 X;  3QG5 C;  4HD0 A;  3TGH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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