2CV9A

Crystal structure of a hypothetical protein from thermus thermophilus hb8
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
252
structure length
252
Chain Sequence
MRVLFIGDVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQPFRAAQGKARFHATELVFEGGRPVAISPYVWEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein TTHA0625
total genus 71
structure length 252
sequence length 252
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13277 YmdB YmdB-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2cv9A00
2QFRA 3H60A 4DHLA 2HY1A 1S95A 4H2IA 4OR9A 5B8IA 1U32A 3QFOA 4ZX2A 5JPEA 2WDEA 3QFKA 3THNA 2BQ8X 1OIEA 2USHA 2HYPA 4G9JA 4H1YP 4UT3A 2WDCA 3AUZA 2BCDA 4LU9A 1WARA 3QFMA 4V0WA 2JOGA 2NXFA 3T1IA 1KBPA 4ORCA 5J28A 3IB8A 3PSOA 4O4KA 4MOYA 5JPFA 3H66A 1OIDA 3N5UA 3HVQA 4H2FA 1S3NA 3DW8C 3E7BA 3DSDA 4H2GA 3ICFA 5GTUA 4I5LC 4MOVA 3ZU0A 1IT6A 4I5NC 4IYPC 4ORAA 3RL3A 1MF8A 3K7WC 1S70A 4TUGA 3P71C 2NYLC 3EGHA 2IE4C 5C1VA 4F0ZA 1II7A 5F3WA 3IVEA 1OI8A 1HO5A 1QFCA 5JJTA 4ORBA 1AUIA 1WAO1 3H67A 4TUIA 4JA9A 1JK7A 1G5BA 1NNWA 4WWLA 3AV0A 2KKNA 5IOHA 2QFPA 3RL4A 3H69A 4HD0A 1UF3A 2P6BA 4FBQA 2Z1AA 2Z06A 4NZVA 1W24A 1V73A 1FJMA 2HYOA 4UWQA 3JYFA 1XZWA 1Z2WA 3GVEA 4B2OA 4J6OA 4IL1A 3KBPA 3H64A 1SU1A 4FCXA 2WDDA 3TGHA 4O24A 2WDFA 2BDXA 3H61A 4MP0A 4Q7FA 2QJCA 4UT2A 1M63A 3H63A 5DNYA 3FGAC 2A22A 3H68A 4DT2A 4H2BA 3QFNA 1HP1A 1T70A 2NPPC 4LTYA 4O5GA 4ZVZA 4KKZA 4UT3B 2O8AA 1T71A 3THOB 3E7AA 4YKEA 3CK2A 3RQZA 1S8EA 3H62B 2GJUA 3DSCA 3QG5C 1HPUA 4JA7A 2O8GA 3C5WC 4LACC 2IAEC 1QHWA 4FBKA 3C9FA 3V4YA 2IE3C 2Q8UA 4FBWA 4XPNA 1S3MA 5INBA 1Z2XA 2DFJA 1TCOA 2CV9A 2XMOA 1S3LA 3PSNA 2YVTA 3IB7A 4KBPA 3IVDA 4DSYA 4V0XA 5EQVA 4H1SA 5HPEA 3RL5A 1XM7A 2ZBMA 3LL8A 3ZTVA 2NYMC 4V0VA 2AHDA 3EGGA 1USHA 1UTEA 2Z72A 2R17A 4O43A 4M0VA 3K7VC
chains in the Genus database with same CATH superfamily
2QFRA 3H60A 4DHLA 2HY1A 1S95A 4H2IA 4OR9A 5B8IA 1U32A 3E0JA 3QFOA 4ZX2A 5JPEA 2WDEA 3QFKA 3THNA 2BQ8X 1OIEA 2USHA 2HYPA 4G9JA 4H1YP 4UT3A 3AUZA 2WDCA 2BCDA 4LU9A 1WARA 3QFMA 4V0WA 2JOGA 2NXFA 3T1IA 1KBPA 4ORCA 5J28A 3IB8A 3PSOA 4O4KA 4MOYA 5JPFA 3H66A 1OIDA 3N5UA 3HVQA 2ZO9B 4H2FA 1S3NA 3DW8C 3E7BA 3DSDA 4H2GA 3ICFA 5GTUA 4I5LC 4MOVA 3ZU0A 1IT6A 4I5NC 4IYPC 4ORAA 3RL3A 1MF8A 3K7WC 1S70A 2ZOAA 3P71C 2NYLC 3EGHA 2IE4C 5C1VA 4F0ZA 1II7A 4TUGA 5F3WA 3IVEA 1OI8A 1HO5A 1QFCA 5JJTA 4ORBA 1AUIA 1WAO1 3H67A 2YEQA 4TUIA 4JA9A 1JK7A 1G5BA 1NNWA 4WWLA 3AV0A 2KKNA 5IOHA 2QFPA 3RL4A 3H69A 4HD0A 1UF3A 2P6BA 4FBQA 2Z1AA 2Z06A 4NZVA 1W24A 1V73A 1FJMA 2HYOA 4UWQA 3JYFA 1XZWA 1Z2WA 3GVEA 4B2OA 4J6OA 4IL1A 3KBPA 3H64A 1SU1A 4FCXA 2WDDA 3TGHA 4O24A 2WDFA 2BDXA 3H61A 4MP0A 4Q7FA 2QJCA 4UT2A 1M63A 3H63A 2DXNA 5DNYA 3FGAC 2A22A 3H68A 4DT2A 4H2BA 3D03A 3QFNA 1HP1A 1T70A 2NPPC 4LTYA 4O5GA 4ZVZA 4KKZA 4UT3B 2O8AA 1T71A 3THOB 3E7AA 4YKEA 3CK2A 3RQZA 1S8EA 3H62B 3K7VC 3FLOA 2GJUA 3DSCA 3QG5C 1HPUA 4JA7A 2O8GA 3C5WC 4LACC 2IAEC 1QHWA 4FBKA 3C9FA 3V4YA 2IE3C 2Q8UA 4FBWA 4XPNA 1S3MA 5INBA 1Z2XA 2DFJA 1TCOA 2CV9A 2XMOA 1S3LA 3PSNA 2YVTA 3IB7A 4KBPA 3IVDA 4DSYA 4V0XA 5EQVA 4H1SA 5HPEA 3RL5A 1XM7A 2ZBMA 3LL8A 3ZTVA 2NYMC 4V0VA 2AHDA 3EGGA 1USHA 1UTEA 2Z72A 2R17A 4O43A 4M0VA 2DXLA
chains in the Genus database with same CATH topology
2QFRA 3H60A 4DHLA 2HY1A 1S95A 4H2IA 4OR9A 5B8IA 1U32A 3E0JA 3QFOA 4ZX2A 5JPEA 2WDEA 3QFKA 3THNA 2BQ8X 1OIEA 2USHA 2HYPA 4G9JA 4H1YP 4UT3A 3AUZA 2WDCA 2BCDA 4LU9A 1WARA 3QFMA 4V0WA 2JOGA 2NXFA 3T1IA 1KBPA 4ORCA 5J28A 3IB8A 3PSOA 4O4KA 4MOYA 5JPFA 3H66A 1OIDA 3N5UA 3HVQA 2ZO9B 4H2FA 1S3NA 3DW8C 3E7BA 3DSDA 4H2GA 3ICFA 5GTUA 4I5LC 4MOVA 3ZU0A 1IT6A 4I5NC 4IYPC 4ORAA 3RL3A 1MF8A 3K7WC 1S70A 2ZOAA 3P71C 2NYLC 3EGHA 2IE4C 5C1VA 4F0ZA 1II7A 4TUGA 5F3WA 3IVEA 1OI8A 1HO5A 1QFCA 5JJTA 4ORBA 1AUIA 1WAO1 3H67A 2YEQA 4TUIA 4JA9A 1JK7A 1G5BA 1NNWA 4WWLA 3AV0A 2KKNA 5IOHA 2QFPA 3RL4A 3H69A 4HD0A 1UF3A 2P6BA 4FBQA 2Z1AA 2Z06A 4NZVA 1W24A 1V73A 1FJMA 2HYOA 4UWQA 3JYFA 1XZWA 1Z2WA 3GVEA 4B2OA 4J6OA 4IL1A 3KBPA 3H64A 1SU1A 4FCXA 2WDDA 3TGHA 4O24A 2WDFA 2BDXA 3H61A 4MP0A 4Q7FA 2QJCA 4UT2A 1M63A 3H63A 2DXNA 5DNYA 3FGAC 2A22A 3H68A 4DT2A 4H2BA 3D03A 3QFNA 1HP1A 1T70A 2NPPC 4LTYA 4O5GA 4ZVZA 4KKZA 4UT3B 2O8AA 1T71A 3THOB 3E7AA 4YKEA 3CK2A 3RQZA 1S8EA 3H62B 3K7VC 3FLOA 2GJUA 3DSCA 3QG5C 1HPUA 4JA7A 2O8GA 3C5WC 4LACC 2IAEC 1QHWA 4FBKA 3C9FA 3V4YA 2IE3C 2Q8UA 4FBWA 4XPNA 1S3MA 5INBA 1Z2XA 2DFJA 1TCOA 2CV9A 2XMOA 1S3LA 3PSNA 2YVTA 3IB7A 4KBPA 3IVDA 4DSYA 4V0XA 5EQVA 4H1SA 5HPEA 3RL5A 1XM7A 2ZBMA 3LL8A 3ZTVA 2NYMC 4V0VA 2AHDA 3EGGA 1USHA 1UTEA 2Z72A 2R17A 4O43A 4M0VA 2DXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QFR A;  3H60 A;  4DHL A;  2HY1 A;  1S95 A;  4H2I A;  4OR9 A;  5B8I A;  1U32 A;  3QFO A;  4ZX2 A;  5JPE A;  2WDE A;  3QFK A;  3THN A;  2BQ8 X;  1OIE A;  2USH A;  2HYP A;  4G9J A;  4H1Y P;  4UT3 A;  2WDC A;  3AUZ A;  2BCD A;  4LU9 A;  1WAR A;  3QFM A;  4V0W A;  2JOG A;  2NXF A;  3T1I A;  1KBP A;  4ORC A;  5J28 A;  3IB8 A;  3PSO A;  4O4K A;  4MOY A;  5JPF A;  3H66 A;  1OID A;  3N5U A;  3HVQ A;  4H2F A;  1S3N A;  3DW8 C;  3E7B A;  3DSD A;  4H2G A;  3ICF A;  5GTU A;  4I5L C;  4MOV A;  3ZU0 A;  1IT6 A;  4I5N C;  4IYP C;  4ORA A;  3RL3 A;  1MF8 A;  3K7W C;  1S70 A;  4TUG A;  3P71 C;  2NYL C;  3EGH A;  2IE4 C;  5C1V A;  4F0Z A;  1II7 A;  5F3W A;  3IVE A;  1OI8 A;  1HO5 A;  1QFC A;  5JJT A;  4ORB A;  1AUI A;  1WAO 1;  3H67 A;  4TUI A;  4JA9 A;  1JK7 A;  1G5B A;  1NNW A;  4WWL A;  3AV0 A;  2KKN A;  5IOH A;  2QFP A;  3RL4 A;  3H69 A;  4HD0 A;  1UF3 A;  2P6B A;  4FBQ A;  2Z1A A;  2Z06 A;  4NZV A;  1W24 A;  1V73 A;  1FJM A;  2HYO A;  4UWQ A;  3JYF A;  1XZW A;  1Z2W A;  3GVE A;  4B2O A;  4J6O A;  4IL1 A;  3KBP A;  3H64 A;  1SU1 A;  4FCX A;  2WDD A;  3TGH A;  4O24 A;  2WDF A;  2BDX A;  3H61 A;  4MP0 A;  4Q7F A;  2QJC A;  4UT2 A;  1M63 A;  3H63 A;  5DNY A;  3FGA C;  2A22 A;  3H68 A;  4DT2 A;  4H2B A;  3QFN A;  1HP1 A;  1T70 A;  2NPP C;  4LTY A;  4O5G A;  4ZVZ A;  4KKZ A;  4UT3 B;  2O8A A;  1T71 A;  3THO B;  3E7A A;  4YKE A;  3CK2 A;  3RQZ A;  1S8E A;  3H62 B;  2GJU A;  3DSC A;  3QG5 C;  1HPU A;  4JA7 A;  2O8G A;  3C5W C;  4LAC C;  2IAE C;  1QHW A;  4FBK A;  3C9F A;  3V4Y A;  2IE3 C;  2Q8U A;  4FBW A;  4XPN A;  1S3M A;  5INB A;  1Z2X A;  2DFJ A;  1TCO A;  2CV9 A;  2XMO A;  1S3L A;  3PSN A;  2YVT A;  3IB7 A;  4KBP A;  3IVD A;  4DSY A;  4V0X A;  5EQV A;  4H1S A;  5HPE A;  3RL5 A;  1XM7 A;  2ZBM A;  3LL8 A;  3ZTV A;  2NYM C;  4V0V A;  2AHD A;  3EGG A;  1USH A;  1UTE A;  2Z72 A;  2R17 A;  4O43 A;  4M0V A;  3K7V C; 
#chains in the Genus database with same CATH topology
 2QFR A;  3H60 A;  4DHL A;  2HY1 A;  1S95 A;  4H2I A;  4OR9 A;  5B8I A;  1U32 A;  3E0J A;  3QFO A;  4ZX2 A;  5JPE A;  2WDE A;  3QFK A;  3THN A;  2BQ8 X;  1OIE A;  2USH A;  2HYP A;  4G9J A;  4H1Y P;  4UT3 A;  3AUZ A;  2WDC A;  2BCD A;  4LU9 A;  1WAR A;  3QFM A;  4V0W A;  2JOG A;  2NXF A;  3T1I A;  1KBP A;  4ORC A;  5J28 A;  3IB8 A;  3PSO A;  4O4K A;  4MOY A;  5JPF A;  3H66 A;  1OID A;  3N5U A;  3HVQ A;  2ZO9 B;  4H2F A;  1S3N A;  3DW8 C;  3E7B A;  3DSD A;  4H2G A;  3ICF A;  5GTU A;  4I5L C;  4MOV A;  3ZU0 A;  1IT6 A;  4I5N C;  4IYP C;  4ORA A;  3RL3 A;  1MF8 A;  3K7W C;  1S70 A;  2ZOA A;  3P71 C;  2NYL C;  3EGH A;  2IE4 C;  5C1V A;  4F0Z A;  1II7 A;  4TUG A;  5F3W A;  3IVE A;  1OI8 A;  1HO5 A;  1QFC A;  5JJT A;  4ORB A;  1AUI A;  1WAO 1;  3H67 A;  2YEQ A;  4TUI A;  4JA9 A;  1JK7 A;  1G5B A;  1NNW A;  4WWL A;  3AV0 A;  2KKN A;  5IOH A;  2QFP A;  3RL4 A;  3H69 A;  4HD0 A;  1UF3 A;  2P6B A;  4FBQ A;  2Z1A A;  2Z06 A;  4NZV A;  1W24 A;  1V73 A;  1FJM A;  2HYO A;  4UWQ A;  3JYF A;  1XZW A;  1Z2W A;  3GVE A;  4B2O A;  4J6O A;  4IL1 A;  3KBP A;  3H64 A;  1SU1 A;  4FCX A;  2WDD A;  3TGH A;  4O24 A;  2WDF A;  2BDX A;  3H61 A;  4MP0 A;  4Q7F A;  2QJC A;  4UT2 A;  1M63 A;  3H63 A;  2DXN A;  5DNY A;  3FGA C;  2A22 A;  3H68 A;  4DT2 A;  4H2B A;  3D03 A;  3QFN A;  1HP1 A;  1T70 A;  2NPP C;  4LTY A;  4O5G A;  4ZVZ A;  4KKZ A;  4UT3 B;  2O8A A;  1T71 A;  3THO B;  3E7A A;  4YKE A;  3CK2 A;  3RQZ A;  1S8E A;  3H62 B;  3K7V C;  3FLO A;  2GJU A;  3DSC A;  3QG5 C;  1HPU A;  4JA7 A;  2O8G A;  3C5W C;  4LAC C;  2IAE C;  1QHW A;  4FBK A;  3C9F A;  3V4Y A;  2IE3 C;  2Q8U A;  4FBW A;  4XPN A;  1S3M A;  5INB A;  1Z2X A;  2DFJ A;  1TCO A;  2CV9 A;  2XMO A;  1S3L A;  3PSN A;  2YVT A;  3IB7 A;  4KBP A;  3IVD A;  4DSY A;  4V0X A;  5EQV A;  4H1S A;  5HPE A;  3RL5 A;  1XM7 A;  2ZBM A;  3LL8 A;  3ZTV A;  2NYM C;  4V0V A;  2AHD A;  3EGG A;  1USH A;  1UTE A;  2Z72 A;  2R17 A;  4O43 A;  4M0V A;  2DXL A; 
#chains in the Genus database with same CATH homology
 2QFR A;  3H60 A;  4DHL A;  2HY1 A;  1S95 A;  4H2I A;  4OR9 A;  5B8I A;  1U32 A;  3E0J A;  3QFO A;  4ZX2 A;  5JPE A;  2WDE A;  3QFK A;  3THN A;  2BQ8 X;  1OIE A;  2USH A;  2HYP A;  4G9J A;  4H1Y P;  4UT3 A;  3AUZ A;  2WDC A;  2BCD A;  4LU9 A;  1WAR A;  3QFM A;  4V0W A;  2JOG A;  2NXF A;  3T1I A;  1KBP A;  4ORC A;  5J28 A;  3IB8 A;  3PSO A;  4O4K A;  4MOY A;  5JPF A;  3H66 A;  1OID A;  3N5U A;  3HVQ A;  2ZO9 B;  4H2F A;  1S3N A;  3DW8 C;  3E7B A;  3DSD A;  4H2G A;  3ICF A;  5GTU A;  4I5L C;  4MOV A;  3ZU0 A;  1IT6 A;  4I5N C;  4IYP C;  4ORA A;  3RL3 A;  1MF8 A;  3K7W C;  1S70 A;  2ZOA A;  3P71 C;  2NYL C;  3EGH A;  2IE4 C;  5C1V A;  4F0Z A;  1II7 A;  4TUG A;  5F3W A;  3IVE A;  1OI8 A;  1HO5 A;  1QFC A;  5JJT A;  4ORB A;  1AUI A;  1WAO 1;  3H67 A;  2YEQ A;  4TUI A;  4JA9 A;  1JK7 A;  1G5B A;  1NNW A;  4WWL A;  3AV0 A;  2KKN A;  5IOH A;  2QFP A;  3RL4 A;  3H69 A;  4HD0 A;  1UF3 A;  2P6B A;  4FBQ A;  2Z1A A;  2Z06 A;  4NZV A;  1W24 A;  1V73 A;  1FJM A;  2HYO A;  4UWQ A;  3JYF A;  1XZW A;  1Z2W A;  3GVE A;  4B2O A;  4J6O A;  4IL1 A;  3KBP A;  3H64 A;  1SU1 A;  4FCX A;  2WDD A;  3TGH A;  4O24 A;  2WDF A;  2BDX A;  3H61 A;  4MP0 A;  4Q7F A;  2QJC A;  4UT2 A;  1M63 A;  3H63 A;  2DXN A;  5DNY A;  3FGA C;  2A22 A;  3H68 A;  4DT2 A;  4H2B A;  3D03 A;  3QFN A;  1HP1 A;  1T70 A;  2NPP C;  4LTY A;  4O5G A;  4ZVZ A;  4KKZ A;  4UT3 B;  2O8A A;  1T71 A;  3THO B;  3E7A A;  4YKE A;  3CK2 A;  3RQZ A;  1S8E A;  3H62 B;  3K7V C;  3FLO A;  2GJU A;  3DSC A;  3QG5 C;  1HPU A;  4JA7 A;  2O8G A;  3C5W C;  4LAC C;  2IAE C;  1QHW A;  4FBK A;  3C9F A;  3V4Y A;  2IE3 C;  2Q8U A;  4FBW A;  4XPN A;  1S3M A;  5INB A;  1Z2X A;  2DFJ A;  1TCO A;  2CV9 A;  2XMO A;  1S3L A;  3PSN A;  2YVT A;  3IB7 A;  4KBP A;  3IVD A;  4DSY A;  4V0X A;  5EQV A;  4H1S A;  5HPE A;  3RL5 A;  1XM7 A;  2ZBM A;  3LL8 A;  3ZTV A;  2NYM C;  4V0V A;  2AHD A;  3EGG A;  1USH A;  1UTE A;  2Z72 A;  2R17 A;  4O43 A;  4M0V A;  2DXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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