2CY3A

Crystal structure of cytochrome c3 from desulfovibrio desulfuricans norway at 1.7 angstroms resolution
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
118
structure length
118
Chain Sequence
ADAPGDDYVISAPEGMKAKPKGDKPGALQKTVPFPHTKHATVECVQCHHTLEADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKALKKDKKPTGPTACGKCHTTN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport (heme protein)
molecule keywords CYTOCHROME C3
publication title Crystal structure of cytochrome c3 from Desulfovibrio desulfuricans Norway at 1.7 A resolution.
pubmed doi rcsb
source organism Desulfomicrobium norvegicum
total genus 23
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 1994-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02085 Cytochrom_CIII Class III cytochrome C family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 2cy3A00
1GYOA 3OUEA 3BXUA 4HB6A 3CARA 1OS6A 2CDVA 1QN1A 1LM2A 3SELX 19HCA 2KMYA 1EHJA 1J0PA 1J0OA 1KWJA 2EWIA 2LDOA 1AQEA 3CAOA 1OFYA 2CVCA 4HB8A 4HBFA 3SJ4X 2YYXA 1F22A 2KSUA 1RWJA 3OUQA 1H29A 3CYRA 1OFWA 1WR5A 2BQ4A 1NEWA 1GM4A 3H4NA 1CZJA 2FFNA 2A3PA 1A2IA 4HDLA 3SJ1X 1I77A 2Z47A 1GMBA 1UP9A 2CTHA 1UPDA 1QN0A 2EWUA 3H34A 1MDVA 2BPNA 3SJ0X 3H33A 2LZZA 2EWKA 3OV0A 1Z1NX 1IT1A 2CYMA 4HC3A 2YXCA 2CY3A 1WADA 1DUWA 2YYWA 1HH5A 1GWSA 2MZ9A 2E84A 1W7OA 2A3MA 1L3OA 2N91A 4HAJA
chains in the Genus database with same CATH superfamily
1GYOA 3OUEA 3BXUA 4HB6A 3CARA 1OS6A 2CDVA 1QN1A 1LM2A 3SELX 19HCA 2KMYA 1EHJA 1J0PA 1J0OA 1KWJA 2EWIA 2LDOA 1AQEA 3CAOA 1OFYA 2CVCA 4HB8A 4HBFA 3SJ4X 2YYXA 1F22A 2KSUA 1RWJA 3OUQA 1H29A 3CYRA 1OFWA 1WR5A 2BQ4A 1NEWA 1GM4A 3H4NA 1CZJA 2FFNA 2A3PA 1A2IA 4HDLA 3SJ1X 1I77A 2Z47A 1GMBA 1UP9A 2CTHA 1UPDA 1QN0A 2EWUA 3H34A 1MDVA 2BPNA 3SJ0X 3H33A 2LZZA 2EWKA 3OV0A 1Z1NX 1IT1A 2CYMA 4HC3A 2YXCA 2CY3A 1WADA 1DUWA 2YYWA 1HH5A 1GWSA 2MZ9A 2E84A 1W7OA 2A3MA 1L3OA 2N91A 4HAJA
chains in the Genus database with same CATH topology
1GYOA 3OUEA 3BXUA 4HB6A 3CARA 1OS6A 2CDVA 1QN1A 1LM2A 3SELX 19HCA 2KMYA 1EHJA 1J0PA 1J0OA 1KWJA 2EWIA 2LDOA 1AQEA 3CAOA 1OFYA 2CVCA 4HB8A 4HBFA 3SJ4X 2YYXA 1F22A 2KSUA 1RWJA 3OUQA 1H29A 3CYRA 1OFWA 1WR5A 2BQ4A 1NEWA 1GM4A 3H4NA 1CZJA 2FFNA 2A3PA 1A2IA 4HDLA 3SJ1X 1I77A 2Z47A 1GMBA 1UP9A 2CTHA 1UPDA 1QN0A 2EWUA 3H34A 1MDVA 2BPNA 3SJ0X 3H33A 2LZZA 2EWKA 3OV0A 1Z1NX 1IT1A 2CYMA 4HC3A 2YXCA 2CY3A 1WADA 1DUWA 2YYWA 1HH5A 1GWSA 2MZ9A 2E84A 1W7OA 2A3MA 1L3OA 2N91A 4HAJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GYO A;  3OUE A;  3BXU A;  4HB6 A;  3CAR A;  1OS6 A;  2CDV A;  1QN1 A;  1LM2 A;  3SEL X;  19HC A;  2KMY A;  1EHJ A;  1J0P A;  1J0O A;  1KWJ A;  2EWI A;  2LDO A;  1AQE A;  3CAO A;  1OFY A;  2CVC A;  4HB8 A;  4HBF A;  3SJ4 X;  2YYX A;  1F22 A;  2KSU A;  1RWJ A;  3OUQ A;  1H29 A;  3CYR A;  1OFW A;  1WR5 A;  2BQ4 A;  1NEW A;  1GM4 A;  3H4N A;  1CZJ A;  2FFN A;  2A3P A;  1A2I A;  4HDL A;  3SJ1 X;  1I77 A;  2Z47 A;  1GMB A;  1UP9 A;  2CTH A;  1UPD A;  1QN0 A;  2EWU A;  3H34 A;  1MDV A;  2BPN A;  3SJ0 X;  3H33 A;  2LZZ A;  2EWK A;  3OV0 A;  1Z1N X;  1IT1 A;  2CYM A;  4HC3 A;  2YXC A;  2CY3 A;  1WAD A;  1DUW A;  2YYW A;  1HH5 A;  1GWS A;  2MZ9 A;  2E84 A;  1W7O A;  2A3M A;  1L3O A;  2N91 A;  4HAJ A; 
#chains in the Genus database with same CATH topology
 1GYO A;  3OUE A;  3BXU A;  4HB6 A;  3CAR A;  1OS6 A;  2CDV A;  1QN1 A;  1LM2 A;  3SEL X;  19HC A;  2KMY A;  1EHJ A;  1J0P A;  1J0O A;  1KWJ A;  2EWI A;  2LDO A;  1AQE A;  3CAO A;  1OFY A;  2CVC A;  4HB8 A;  4HBF A;  3SJ4 X;  2YYX A;  1F22 A;  2KSU A;  1RWJ A;  3OUQ A;  1H29 A;  3CYR A;  1OFW A;  1WR5 A;  2BQ4 A;  1NEW A;  1GM4 A;  3H4N A;  1CZJ A;  2FFN A;  2A3P A;  1A2I A;  4HDL A;  3SJ1 X;  1I77 A;  2Z47 A;  1GMB A;  1UP9 A;  2CTH A;  1UPD A;  1QN0 A;  2EWU A;  3H34 A;  1MDV A;  2BPN A;  3SJ0 X;  3H33 A;  2LZZ A;  2EWK A;  3OV0 A;  1Z1N X;  1IT1 A;  2CYM A;  4HC3 A;  2YXC A;  2CY3 A;  1WAD A;  1DUW A;  2YYW A;  1HH5 A;  1GWS A;  2MZ9 A;  2E84 A;  1W7O A;  2A3M A;  1L3O A;  2N91 A;  4HAJ A; 
#chains in the Genus database with same CATH homology
 1GYO A;  3OUE A;  3BXU A;  4HB6 A;  3CAR A;  1OS6 A;  2CDV A;  1QN1 A;  1LM2 A;  3SEL X;  19HC A;  2KMY A;  1EHJ A;  1J0P A;  1J0O A;  1KWJ A;  2EWI A;  2LDO A;  1AQE A;  3CAO A;  1OFY A;  2CVC A;  4HB8 A;  4HBF A;  3SJ4 X;  2YYX A;  1F22 A;  2KSU A;  1RWJ A;  3OUQ A;  1H29 A;  3CYR A;  1OFW A;  1WR5 A;  2BQ4 A;  1NEW A;  1GM4 A;  3H4N A;  1CZJ A;  2FFN A;  2A3P A;  1A2I A;  4HDL A;  3SJ1 X;  1I77 A;  2Z47 A;  1GMB A;  1UP9 A;  2CTH A;  1UPD A;  1QN0 A;  2EWU A;  3H34 A;  1MDV A;  2BPN A;  3SJ0 X;  3H33 A;  2LZZ A;  2EWK A;  3OV0 A;  1Z1N X;  1IT1 A;  2CYM A;  4HC3 A;  2YXC A;  2CY3 A;  1WAD A;  1DUW A;  2YYW A;  1HH5 A;  1GWS A;  2MZ9 A;  2E84 A;  1W7O A;  2A3M A;  1L3O A;  2N91 A;  4HAJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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